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PI0003729 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003729
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr03:12272664..12273056
RNA-Seq ExpressionPI0003729
SyntenyPI0003729
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]5.8e-4370.77Show/hide
Query:  MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAIADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRII
        +YSQGV MS +++ G RAG++SE RN SSGSK KRG +HYE+VEVI +  +F NDQLK I DWPKEK ATEVELR EVVKQLQD P+L+S+DR KLM+I+
Subjt:  MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAIADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRII

Query:  FRSVDDIEGFLSVPTELKLEYCNILLEENV
        FRSV+ IEGFLS+PT+LKLEYCNILLE NV
Subjt:  FRSVDDIEGFLSVPTELKLEYCNILLEENV

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.1e-4574.02Show/hide
Query:  MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAIADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRII
        MYSQGV MSP++M G RAG++SE +NCSSGSK K+G +HYE VEVI++ ++F NDQLKAIA+WPKEK ATEVELRAEV+KQLQD PELQSRDR KL++I+
Subjt:  MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAIADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRII

Query:  FRSVDDIEGFLSVPTELKLEYCNILLE
        FRSV+ IEGFLS+PTE KLEYCNILL+
Subjt:  FRSVDDIEGFLSVPTELKLEYCNILLE

KAA0066604.1 retrotransposon protein [Cucumis melo var. makuwa]5.8e-4373.23Show/hide
Query:  MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAIADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRII
        MYSQGV MS N+M G R G++SE RNCSSGSK KRG +HYE VEVIR+ M+F NDQLK IA+WPKEK  TEVELRAEVVKQLQ+  EL SRDR KLM+I+
Subjt:  MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAIADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRII

Query:  FRSVDDIEGFLSVPTELKLEYCNILLE
        F SV+ IEGFLS+P ELKLEYCNILL+
Subjt:  FRSVDDIEGFLSVPTELKLEYCNILLE

KAE8646815.1 hypothetical protein Csa_005367, partial [Cucumis sativus]4.8e-4574.42Show/hide
Query:  MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAIADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRII
        MYSQG+DM P++MLGTR  +SSEGRNCSSGSK K GGQHYE V+VI NEM+  NDQLKAIA+W KEK ATEVEL  EVVKQLQD  EL++RDR+KLM+II
Subjt:  MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAIADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRII

Query:  FRSVDDIEGFLSVPTELKLEYCNILLEEN
        F  VDDIEGFLS PT+LKLEYC +LLE+N
Subjt:  FRSVDDIEGFLSVPTELKLEYCNILLEEN

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]9.0e-4471.54Show/hide
Query:  MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAIADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRII
        MYSQGV MSP++M G RAG++SE RNCSS SK KRG + YE VEVIR+ M+F N+QLKAIADWPKEK A EVE+RA+VVKQLQD P+L+S+DR KLM+I+
Subjt:  MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAIADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRII

Query:  FRSVDDIEGFLSVPTELKLEYCNILLEENV
        FRS++ IEGFLS+PTELKLEYCNILL+  V
Subjt:  FRSVDDIEGFLSVPTELKLEYCNILLEENV

TrEMBL top hitse value%identityAlignment
A0A0A0KFW0 Uncharacterized protein1.0e-4574.62Show/hide
Query:  MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAIADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRII
        MYSQG+DM P++MLGTR  +SSEGRNCSSGSK K GGQHYE V+VI NEM+  NDQLKAIA+W KEK ATEVEL  EVVKQLQD  EL++RDR+KLM+II
Subjt:  MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAIADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRII

Query:  FRSVDDIEGFLSVPTELKLEYCNILLEENV
        F  VDDIEGFLS PT+LKLEYC +LLE+NV
Subjt:  FRSVDDIEGFLSVPTELKLEYCNILLEENV

A0A1S3B4L3 uncharacterized protein LOC1034859534.4e-4471.54Show/hide
Query:  MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAIADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRII
        MYSQGV MSP++M G RAG++SE RNCSS SK KRG + YE VEVIR+ M+F N+QLKAIADWPKEK A EVE+RA+VVKQLQD P+L+S+DR KLM+I+
Subjt:  MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAIADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRII

Query:  FRSVDDIEGFLSVPTELKLEYCNILLEENV
        FRS++ IEGFLS+PTELKLEYCNILL+  V
Subjt:  FRSVDDIEGFLSVPTELKLEYCNILLEENV

A0A5A7SQU2 Putative nuclease HARBI11.0e-4574.02Show/hide
Query:  MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAIADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRII
        MYSQGV MSP++M G RAG++SE +NCSSGSK K+G +HYE VEVI++ ++F NDQLKAIA+WPKEK ATEVELRAEV+KQLQD PELQSRDR KL++I+
Subjt:  MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAIADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRII

Query:  FRSVDDIEGFLSVPTELKLEYCNILLE
        FRSV+ IEGFLS+PTE KLEYCNILL+
Subjt:  FRSVDDIEGFLSVPTELKLEYCNILLE

A0A5A7U0H7 Retrotransposon protein4.4e-4471.54Show/hide
Query:  MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAIADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRII
        MYSQGV MSP++M G RAG++SE RNCSS SK KRG + YE VEVIR+ M+F N+QLKAIADWPKEK A EVE+RA+VVKQLQD P+L+S+DR KLM+I+
Subjt:  MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAIADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRII

Query:  FRSVDDIEGFLSVPTELKLEYCNILLEENV
        FRS++ IEGFLS+PTELKLEYCNILL+  V
Subjt:  FRSVDDIEGFLSVPTELKLEYCNILLEENV

A0A5D3CT52 Retrotransposon protein2.8e-4373.23Show/hide
Query:  MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAIADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRII
        MYSQGV MS N+M G R G++SE RNCSSGSK KRG +HYE VEVIR+ M+F NDQLK IA+WPKEK  TEVELRAEVVKQLQ+  EL SRDR KLM+I+
Subjt:  MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAIADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRII

Query:  FRSVDDIEGFLSVPTELKLEYCNILLE
        F SV+ IEGFLS+P ELKLEYCNILL+
Subjt:  FRSVDDIEGFLSVPTELKLEYCNILLE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTATAGCCAAGGAGTGGATATGTCACCAAATGACATGTTAGGAACACGTGCAGGTCGATCAAGTGAAGGACGAAATTGTTCAAGTGGAAGTAAGTGGAAACGAGGTGG
CCAACATTATGAAATAGTGGAGGTGATCAGGAATGAAATGGACTTTGCAAACGATCAATTAAAGGCAATTGCAGATTGGCCAAAAGAAAAGTGTGCAACAGAGGTCGAAT
TGCGTGCTGAAGTCGTGAAACAATTGCAAGATTTCCCTGAACTACAGAGCCGAGATAGAATAAAGCTTATGCGAATCATATTTCGTAGTGTGGATGACATAGAGGGATTC
TTGTCAGTTCCAACAGAACTTAAATTGGAGTATTGCAATATTCTCTTGGAAGAAAATGTTTGA
mRNA sequenceShow/hide mRNA sequence
ATGTATAGCCAAGGAGTGGATATGTCACCAAATGACATGTTAGGAACACGTGCAGGTCGATCAAGTGAAGGACGAAATTGTTCAAGTGGAAGTAAGTGGAAACGAGGTGG
CCAACATTATGAAATAGTGGAGGTGATCAGGAATGAAATGGACTTTGCAAACGATCAATTAAAGGCAATTGCAGATTGGCCAAAAGAAAAGTGTGCAACAGAGGTCGAAT
TGCGTGCTGAAGTCGTGAAACAATTGCAAGATTTCCCTGAACTACAGAGCCGAGATAGAATAAAGCTTATGCGAATCATATTTCGTAGTGTGGATGACATAGAGGGATTC
TTGTCAGTTCCAACAGAACTTAAATTGGAGTATTGCAATATTCTCTTGGAAGAAAATGTTTGA
Protein sequenceShow/hide protein sequence
MYSQGVDMSPNDMLGTRAGRSSEGRNCSSGSKWKRGGQHYEIVEVIRNEMDFANDQLKAIADWPKEKCATEVELRAEVVKQLQDFPELQSRDRIKLMRIIFRSVDDIEGF
LSVPTELKLEYCNILLEENV