CuGenDBv2

Gene ID	PI0003796
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Reverse transcriptase domain-containing protein
Genome location	chr05:6728663..6729241
RNA-Seq Expression	PI0003796
Synteny	PI0003796
Gene Ontology terms	GO:0006278 - RNA-dependent DNA biosynthetic process (biological process) GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domains	IPR036691 - Endonuclease/exonuclease/phosphatase superfamily

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0026071.1 uncharacterized protein E6C27_scaffold581G00620 [Cucumis melo var. makuwa]

5.5e-74

71.27

Show/hide

Query:  MWKKDRFDFTPSVVDEQFVSGVIADLHSGVTVEVLCVYASNSNMDRRVLWRRLVEITSSWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREAD
        MWKK+RF F+  V+DEQFV+G + DL SGV VEV CVYASNSN++RR+LW RLVEITS+WSSPGVVM DFNAIRVHSEA  GSP+  +ME+F+LAIR+AD
Subjt:  MWKKDRFDFTPSVVDEQFVSGVIADLHSGVTVEVLCVYASNSNMDRRVLWRRLVEITSSWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREAD

Query:  LVEPAVQGNWFTWTSKVRGSGRLRRLDRILVNEQGLMAWPSLRVTVLPWGISDHSPILFYPVVEQQRRIISFRFFNHWVEE
        LVEP+VQGNWFTWTSKV+GSG LRRLDR+LVN+  L  WP++ V VLPWGISDH PILFYP  +   +++SFRFFNHWVE+
Subjt:  LVEPAVQGNWFTWTSKVRGSGRLRRLDRILVNEQGLMAWPSLRVTVLPWGISDHSPILFYPVVEQQRRIISFRFFNHWVEE

KAA0046851.1 uncharacterized protein E6C27_scaffold19358G00020 [Cucumis melo var. makuwa]

8.5e-75

72.93

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Query:  MWKKDRFDFTPSVVDEQFVSGVIADLHSGVTVEVLCVYASNSNMDRRVLWRRLVEITSSWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREAD
        MWKK RF F   V+DE+FV G + DL  GV VEV+CVYASNS+ +RR LWR L EITS+WSS GVVMGDFNAIRVHSEA GGSP+  +MEEFDLAIR+AD
Subjt:  MWKKDRFDFTPSVVDEQFVSGVIADLHSGVTVEVLCVYASNSNMDRRVLWRRLVEITSSWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREAD

Query:  LVEPAVQGNWFTWTSKVRGSGRLRRLDRILVNEQGLMAWPSLRVTVLPWGISDHSPILFYPVVEQQRRIISFRFFNHWVEE
        LVEP+VQGNWFTWTSKV+GSG LRRLDR+LVN++ L AWP++R+ VLPWGISDHSPILFYP  +   R++SFRFFNHWVEE
Subjt:  LVEPAVQGNWFTWTSKVRGSGRLRRLDRILVNEQGLMAWPSLRVTVLPWGISDHSPILFYPVVEQQRRIISFRFFNHWVEE

KAA0059841.1 reverse transcriptase [Cucumis melo var. makuwa]

4.5e-76

73.48

Show/hide

Query:  MWKKDRFDFTPSVVDEQFVSGVIADLHSGVTVEVLCVYASNSNMDRRVLWRRLVEITSSWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREAD
        MWKK+RF F+  VVDEQFV+G + DL  GV VEV CVYASNSN++RR+LW RLVE TS+WSSPGVVMGDFNAIRVHSEA GGSP+  +ME+FDLAIR+AD
Subjt:  MWKKDRFDFTPSVVDEQFVSGVIADLHSGVTVEVLCVYASNSNMDRRVLWRRLVEITSSWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREAD

Query:  LVEPAVQGNWFTWTSKVRGSGRLRRLDRILVNEQGLMAWPSLRVTVLPWGISDHSPILFYPVVEQQRRIISFRFFNHWVEE
        LVEP+VQGNWFTWTSKV GSG LRRLDR+LVN+  L AWP++ V VLPWGISDHSPILFYP  +   +++SFRFFNHWVE+
Subjt:  LVEPAVQGNWFTWTSKVRGSGRLRRLDRILVNEQGLMAWPSLRVTVLPWGISDHSPILFYPVVEQQRRIISFRFFNHWVEE

TYK28099.1 uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]

5.5e-74

71.27

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Query:  MWKKDRFDFTPSVVDEQFVSGVIADLHSGVTVEVLCVYASNSNMDRRVLWRRLVEITSSWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREAD
        MWKK+RF F+  V+DEQFV+G + DL SGV VEV CVYASNSN++RR+LW RLVEITS+WSSPGVVM DFNAIRVHSEA  GSP+  +ME+F+LAIR+AD
Subjt:  MWKKDRFDFTPSVVDEQFVSGVIADLHSGVTVEVLCVYASNSNMDRRVLWRRLVEITSSWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREAD

Query:  LVEPAVQGNWFTWTSKVRGSGRLRRLDRILVNEQGLMAWPSLRVTVLPWGISDHSPILFYPVVEQQRRIISFRFFNHWVEE
        LVEP+VQGNWFTWTSKV+GSG LRRLDR+LVN+  L  WP++ V VLPWGISDH PILFYP  +   +++SFRFFNHWVE+
Subjt:  LVEPAVQGNWFTWTSKVRGSGRLRRLDRILVNEQGLMAWPSLRVTVLPWGISDHSPILFYPVVEQQRRIISFRFFNHWVEE

XP_008466769.1 PREDICTED: uncharacterized protein LOC103504100 [Cucumis melo]

4.5e-76

73.48

Show/hide

Query:  MWKKDRFDFTPSVVDEQFVSGVIADLHSGVTVEVLCVYASNSNMDRRVLWRRLVEITSSWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREAD
        MWKK+RF F+  VVDEQFV+G + DL  GV VEV CVYASNSN++RR+LW RLVE TS+WSSPGVVMGDFNAIRVHSEA GGSP+  +ME+FDLAIR+AD
Subjt:  MWKKDRFDFTPSVVDEQFVSGVIADLHSGVTVEVLCVYASNSNMDRRVLWRRLVEITSSWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREAD

Query:  LVEPAVQGNWFTWTSKVRGSGRLRRLDRILVNEQGLMAWPSLRVTVLPWGISDHSPILFYPVVEQQRRIISFRFFNHWVEE
        LVEP+VQGNWFTWTSKV GSG LRRLDR+LVN+  L AWP++ V VLPWGISDHSPILFYP  +   +++SFRFFNHWVE+
Subjt:  LVEPAVQGNWFTWTSKVRGSGRLRRLDRILVNEQGLMAWPSLRVTVLPWGISDHSPILFYPVVEQQRRIISFRFFNHWVEE

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CRZ6 uncharacterized protein LOC103504100

2.2e-76

73.48

Show/hide

Query:  MWKKDRFDFTPSVVDEQFVSGVIADLHSGVTVEVLCVYASNSNMDRRVLWRRLVEITSSWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREAD
        MWKK+RF F+  VVDEQFV+G + DL  GV VEV CVYASNSN++RR+LW RLVE TS+WSSPGVVMGDFNAIRVHSEA GGSP+  +ME+FDLAIR+AD
Subjt:  MWKKDRFDFTPSVVDEQFVSGVIADLHSGVTVEVLCVYASNSNMDRRVLWRRLVEITSSWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREAD

Query:  LVEPAVQGNWFTWTSKVRGSGRLRRLDRILVNEQGLMAWPSLRVTVLPWGISDHSPILFYPVVEQQRRIISFRFFNHWVEE
        LVEP+VQGNWFTWTSKV GSG LRRLDR+LVN+  L AWP++ V VLPWGISDHSPILFYP  +   +++SFRFFNHWVE+
Subjt:  LVEPAVQGNWFTWTSKVRGSGRLRRLDRILVNEQGLMAWPSLRVTVLPWGISDHSPILFYPVVEQQRRIISFRFFNHWVEE

A0A5A7SPE5 Reverse transcriptase domain-containing protein

2.7e-74

71.27

Show/hide

Query:  MWKKDRFDFTPSVVDEQFVSGVIADLHSGVTVEVLCVYASNSNMDRRVLWRRLVEITSSWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREAD
        MWKK+RF F+  V+DEQFV+G + DL SGV VEV CVYASNSN++RR+LW RLVEITS+WSSPGVVM DFNAIRVHSEA  GSP+  +ME+F+LAIR+AD
Subjt:  MWKKDRFDFTPSVVDEQFVSGVIADLHSGVTVEVLCVYASNSNMDRRVLWRRLVEITSSWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREAD

Query:  LVEPAVQGNWFTWTSKVRGSGRLRRLDRILVNEQGLMAWPSLRVTVLPWGISDHSPILFYPVVEQQRRIISFRFFNHWVEE
        LVEP+VQGNWFTWTSKV+GSG LRRLDR+LVN+  L  WP++ V VLPWGISDH PILFYP  +   +++SFRFFNHWVE+
Subjt:  LVEPAVQGNWFTWTSKVRGSGRLRRLDRILVNEQGLMAWPSLRVTVLPWGISDHSPILFYPVVEQQRRIISFRFFNHWVEE

A0A5A7TZS0 Reverse transcriptase domain-containing protein

4.1e-75

72.93

Show/hide

Query:  MWKKDRFDFTPSVVDEQFVSGVIADLHSGVTVEVLCVYASNSNMDRRVLWRRLVEITSSWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREAD
        MWKK RF F   V+DE+FV G + DL  GV VEV+CVYASNS+ +RR LWR L EITS+WSS GVVMGDFNAIRVHSEA GGSP+  +MEEFDLAIR+AD
Subjt:  MWKKDRFDFTPSVVDEQFVSGVIADLHSGVTVEVLCVYASNSNMDRRVLWRRLVEITSSWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREAD

Query:  LVEPAVQGNWFTWTSKVRGSGRLRRLDRILVNEQGLMAWPSLRVTVLPWGISDHSPILFYPVVEQQRRIISFRFFNHWVEE
        LVEP+VQGNWFTWTSKV+GSG LRRLDR+LVN++ L AWP++R+ VLPWGISDHSPILFYP  +   R++SFRFFNHWVEE
Subjt:  LVEPAVQGNWFTWTSKVRGSGRLRRLDRILVNEQGLMAWPSLRVTVLPWGISDHSPILFYPVVEQQRRIISFRFFNHWVEE

A0A5A7V275 Reverse transcriptase

2.2e-76

73.48

Show/hide

Query:  MWKKDRFDFTPSVVDEQFVSGVIADLHSGVTVEVLCVYASNSNMDRRVLWRRLVEITSSWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREAD
        MWKK+RF F+  VVDEQFV+G + DL  GV VEV CVYASNSN++RR+LW RLVE TS+WSSPGVVMGDFNAIRVHSEA GGSP+  +ME+FDLAIR+AD
Subjt:  MWKKDRFDFTPSVVDEQFVSGVIADLHSGVTVEVLCVYASNSNMDRRVLWRRLVEITSSWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREAD

Query:  LVEPAVQGNWFTWTSKVRGSGRLRRLDRILVNEQGLMAWPSLRVTVLPWGISDHSPILFYPVVEQQRRIISFRFFNHWVEE
        LVEP+VQGNWFTWTSKV GSG LRRLDR+LVN+  L AWP++ V VLPWGISDHSPILFYP  +   +++SFRFFNHWVE+
Subjt:  LVEPAVQGNWFTWTSKVRGSGRLRRLDRILVNEQGLMAWPSLRVTVLPWGISDHSPILFYPVVEQQRRIISFRFFNHWVEE

A0A5D3DXE4 Reverse transcriptase domain-containing protein

2.7e-74

71.27

Show/hide

Query:  MWKKDRFDFTPSVVDEQFVSGVIADLHSGVTVEVLCVYASNSNMDRRVLWRRLVEITSSWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREAD
        MWKK+RF F+  V+DEQFV+G + DL SGV VEV CVYASNSN++RR+LW RLVEITS+WSSPGVVM DFNAIRVHSEA  GSP+  +ME+F+LAIR+AD
Subjt:  MWKKDRFDFTPSVVDEQFVSGVIADLHSGVTVEVLCVYASNSNMDRRVLWRRLVEITSSWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREAD

Query:  LVEPAVQGNWFTWTSKVRGSGRLRRLDRILVNEQGLMAWPSLRVTVLPWGISDHSPILFYPVVEQQRRIISFRFFNHWVEE
        LVEP+VQGNWFTWTSKV+GSG LRRLDR+LVN+  L  WP++ V VLPWGISDH PILFYP  +   +++SFRFFNHWVE+
Subjt:  LVEPAVQGNWFTWTSKVRGSGRLRRLDRILVNEQGLMAWPSLRVTVLPWGISDHSPILFYPVVEQQRRIISFRFFNHWVEE

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G40390.1 DNAse I-like superfamily protein

5.4e-11

28.08

Show/hide

Query:  NSNMDRRVLWRRLVEITSS---WSSPGVVMGDFNAIRVHSEACGGSPVT---RDMEEFDLAIREADLVEPAVQGNWFTWTSKVRGSGRLRRLDRILVNEQ
        N+  +RR LW  +  +++S    +SP +V+GDFN I   +E     P     + +E+    +R++DLV+   +G  +TW++  + +  LR+LDR +VN  
Subjt:  NSNMDRRVLWRRLVEITSS---WSSPGVVMGDFNAIRVHSEACGGSPVT---RDMEEFDLAIREADLVEPAVQGNWFTWTSKVRGSGRLRRLDRILVNEQ

Query:  GLMAWPSLRVTVLPWGISDHSPILFY----PVVEQQRRIISFRFFN
         L  +P+      P   SDH+  +      P + +++   SF++F+
Subjt:  GLMAWPSLRVTVLPWGISDHSPILFY----PVVEQQRRIISFRFFN

Sequences

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CDS sequence

Show/hide CDS sequence

ATGTGGAAGAAGGATAGGTTTGATTTTACTCCTAGCGTGGTGGATGAGCAGTTTGTTTCAGGTGTGATTGCTGATTTGCATTCTGGTGTGACTGTGGAGGTGTTATGTGT
TTATGCCTCTAATAGTAATATGGACCGTCGTGTGCTTTGGCGTCGGTTAGTTGAGATCACTTCTAGTTGGTCGAGTCCAGGTGTGGTTATGGGAGATTTTAATGCAATTC
GAGTGCACTCTGAAGCTTGTGGTGGGAGTCCGGTTACTAGAGATATGGAGGAATTTGATCTTGCTATTCGCGAGGCTGACTTGGTTGAGCCAGCTGTTCAGGGAAACTGG
TTCACTTGGACCAGCAAGGTGCGAGGTTCAGGTCGGTTGCGTCGGCTTGATCGTATTTTGGTTAATGAGCAGGGGTTAATGGCTTGGCCTAGTCTGCGTGTTACTGTTTT
GCCTTGGGGAATTTCTGACCATTCCCCTATATTATTCTATCCTGTTGTTGAGCAACAGAGGCGTATTATTTCGTTTCGTTTCTTTAATCATTGGGTGGAGGAACGTCTTT
CAGTGATGTGGTGTCTTCGGTTTGGGTGA

mRNA sequence

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Protein sequence

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MWKKDRFDFTPSVVDEQFVSGVIADLHSGVTVEVLCVYASNSNMDRRVLWRRLVEITSSWSSPGVVMGDFNAIRVHSEACGGSPVTRDMEEFDLAIREADLVEPAVQGNW
FTWTSKVRGSGRLRRLDRILVNEQGLMAWPSLRVTVLPWGISDHSPILFYPVVEQQRRIISFRFFNHWVEERLSVMWCLRFG

PI0003796 (gene) of Melon (PI 482460) v1 genome