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PI0003813 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003813
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr11:16248061..16249302
RNA-Seq ExpressionPI0003813
SyntenyPI0003813
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.0e-3585.88Show/hide
Query:  MLNITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWRDNPNLKWGNDNQKPTQATSSSSNQG
        MLN+TTLLTSFVQG PLKV KCGVCGLVGHPNDKCP++IEDVN++RKYDPHGNTYNS WRDNPNL+WGNDNQK TQA S+SSNQG
Subjt:  MLNITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWRDNPNLKWGNDNQKPTQATSSSSNQG

KAA0053321.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.1e-3647.71Show/hide
Query:  MLNITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWRDNPNLKWGNDNQKPTQATSSSSNQGDE-------TTNNST
        MLN+TTLLTSFVQ  PLKV KCGVCGLVGHPNDKCP++IEDVN++R+YDP+GNTYNS WRDNPNL+WGNDNQK TQA  +SSNQG            N+ 
Subjt:  MLNITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWRDNPNLKWGNDNQKPTQATSSSSNQGDE-------TTNNST

Query:  HYRHKQVGRKRQASGPIEPCK------------------------CECHFTK-KWLSPKKKETPKEEELLEMLRKV------LTATRCNPTSAKVCKVSK
         ++ +   +  Q +  I                             +   TK K ++PKKKETPKEEELLEM RKV      L A +  P  AK     K
Subjt:  HYRHKQVGRKRQASGPIEPCK------------------------CECHFTK-KWLSPKKKETPKEEELLEMLRKV------LTATRCNPTSAKVCKVSK

Query:  GVVHQQEEIKEKPMQNHP
         +   + + KE+ M+ HP
Subjt:  GVVHQQEEIKEKPMQNHP

KAA0056048.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.0e-3552.84Show/hide
Query:  MLNITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWRDNPNLKWGNDNQKPTQATSSSSNQGDETTN-------NST
        MLN+TTLLTSFVQG PLKV KCGVCGLVGHPNDKCP++IEDVNV+R+YDPHGNT NS WRDNPN +WGNDNQK TQ   +SSNQG    +       N+ 
Subjt:  MLNITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWRDNPNLKWGNDNQKPTQATSSSSNQGDETTN-------NST

Query:  HYRHKQVGR---------KRQASG--PIEPCKCECHF--------------TKKWLSPKKKETPKEEELLEMLRKV
         ++ +   +         K    G  P +P                      +K L+PKKKET KEEELLEM RKV
Subjt:  HYRHKQVGR---------KRQASG--PIEPCKCECHF--------------TKKWLSPKKKETPKEEELLEMLRKV

KAA0062012.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.6e-3685.88Show/hide
Query:  MLNITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWRDNPNLKWGNDNQKPTQATSSSSNQG
        MLN+TTLLTSFVQG PLKV KCGVCGLVGHPNDKCP++IEDVN++R+YDPHGNTYNSRWRDNPNL+WGNDNQK TQA S+SSNQG
Subjt:  MLNITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWRDNPNLKWGNDNQKPTQATSSSSNQG

KAA0065466.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.5e-3852.13Show/hide
Query:  ITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWRDNPNLKWGNDNQKPTQATSSSSNQGDE-------TTNNSTHYR
        +TTLLTSFVQG  LKV KCGVCGLVGHPNDKC ++IEDVN++RK+DPHGNTYNS WRDNPNL+WGNDNQK TQA  +SSNQG            N+  ++
Subjt:  ITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWRDNPNLKWGNDNQKPTQATSSSSNQGDE-------TTNNSTHYR

Query:  HKQVGRKRQASGPIEPCKCECHF----TKKWLSPKKKETPKEEELLEMLRKV---LTATRCNPTSAKVCKVSKGVVHQQEEIKEKPMQ
         K   +  Q +  I     + +F    T   L+PKKKETPKEEELLEM RKV   L          K  K  K +   + + KE+ M+
Subjt:  HKQVGRKRQASGPIEPCKCECHF----TKKWLSPKKKETPKEEELLEMLRKV---LTATRCNPTSAKVCKVSKGVVHQQEEIKEKPMQ

TrEMBL top hitse value%identityAlignment
A0A5A7UID2 Retrotransposon gag protein1.0e-3647.71Show/hide
Query:  MLNITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWRDNPNLKWGNDNQKPTQATSSSSNQGDE-------TTNNST
        MLN+TTLLTSFVQ  PLKV KCGVCGLVGHPNDKCP++IEDVN++R+YDP+GNTYNS WRDNPNL+WGNDNQK TQA  +SSNQG            N+ 
Subjt:  MLNITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWRDNPNLKWGNDNQKPTQATSSSSNQGDE-------TTNNST

Query:  HYRHKQVGRKRQASGPIEPCK------------------------CECHFTK-KWLSPKKKETPKEEELLEMLRKV------LTATRCNPTSAKVCKVSK
         ++ +   +  Q +  I                             +   TK K ++PKKKETPKEEELLEM RKV      L A +  P  AK     K
Subjt:  HYRHKQVGRKRQASGPIEPCK------------------------CECHFTK-KWLSPKKKETPKEEELLEMLRKV------LTATRCNPTSAKVCKVSK

Query:  GVVHQQEEIKEKPMQNHP
         +   + + KE+ M+ HP
Subjt:  GVVHQQEEIKEKPMQNHP

A0A5A7ULU1 Retrotransposon gag protein5.0e-3652.84Show/hide
Query:  MLNITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWRDNPNLKWGNDNQKPTQATSSSSNQGDETTN-------NST
        MLN+TTLLTSFVQG PLKV KCGVCGLVGHPNDKCP++IEDVNV+R+YDPHGNT NS WRDNPN +WGNDNQK TQ   +SSNQG    +       N+ 
Subjt:  MLNITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWRDNPNLKWGNDNQKPTQATSSSSNQGDETTN-------NST

Query:  HYRHKQVGR---------KRQASG--PIEPCKCECHF--------------TKKWLSPKKKETPKEEELLEMLRKV
         ++ +   +         K    G  P +P                      +K L+PKKKET KEEELLEM RKV
Subjt:  HYRHKQVGR---------KRQASG--PIEPCKCECHF--------------TKKWLSPKKKETPKEEELLEMLRKV

A0A5A7V1C6 Retrotransposon gag protein1.7e-3685.88Show/hide
Query:  MLNITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWRDNPNLKWGNDNQKPTQATSSSSNQG
        MLN+TTLLTSFVQG PLKV KCGVCGLVGHPNDKCP++IEDVN++R+YDPHGNTYNSRWRDNPNL+WGNDNQK TQA S+SSNQG
Subjt:  MLNITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWRDNPNLKWGNDNQKPTQATSSSSNQG

A0A5A7VGL0 Retrotransposon gag protein4.1e-3852.13Show/hide
Query:  ITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWRDNPNLKWGNDNQKPTQATSSSSNQGDE-------TTNNSTHYR
        +TTLLTSFVQG  LKV KCGVCGLVGHPNDKC ++IEDVN++RK+DPHGNTYNS WRDNPNL+WGNDNQK TQA  +SSNQG            N+  ++
Subjt:  ITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWRDNPNLKWGNDNQKPTQATSSSSNQGDE-------TTNNSTHYR

Query:  HKQVGRKRQASGPIEPCKCECHF----TKKWLSPKKKETPKEEELLEMLRKV---LTATRCNPTSAKVCKVSKGVVHQQEEIKEKPMQ
         K   +  Q +  I     + +F    T   L+PKKKETPKEEELLEM RKV   L          K  K  K +   + + KE+ M+
Subjt:  HKQVGRKRQASGPIEPCKCECHF----TKKWLSPKKKETPKEEELLEMLRKV---LTATRCNPTSAKVCKVSKGVVHQQEEIKEKPMQ

A0A5D3CRR8 Retrotransposon gag protein5.0e-3685.88Show/hide
Query:  MLNITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWRDNPNLKWGNDNQKPTQATSSSSNQG
        MLN+TTLLTSFVQG PLKV KCGVCGLVGHPNDKCP++IEDVN++RKYDPHGNTYNS WRDNPNL+WGNDNQK TQA S+SSNQG
Subjt:  MLNITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWRDNPNLKWGNDNQKPTQATSSSSNQG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTAAATATTACAACTCTTCTTACTTCTTTTGTGCAAGGAGGTCCTCTCAAAGTAGCCAAGTGTGGAGTTTGTGGCTTGGTTGGTCATCCCAATGATAAATGCCCCGA
CTTGATTGAGGATGTTAATGTCATTCGTAAATATGACCCCCATGGTAATACATACAATTCGAGATGGAGAGACAACCCAAACTTGAAATGGGGGAATGACAACCAAAAGC
CCACCCAAGCAACATCCTCCTCTTCAAACCAAGGAGATGAAACAACAAATAACTCAACTCACTACCGCCATAAGCAAGTTGGAAGGAAAAGGCAAGCTTCCGGTCCAATC
GAACCATGCAAATGTGAGTGCCATTTCACTAAGAAGTGGTTGTCTCCAAAGAAGAAGGAAACACCCAAGGAAGAAGAACTTTTGGAGATGCTTAGAAAGGTTCTTACCGC
TACTAGATGCAATCCAACAAGTGCCAAGGTATGCAAAGTTTCTAAAGGAGTTGTGCACCAACAAGAGGAAATTAAAGAAAAGCCCATGCAAAATCACCCAGAGACCAAAA
CGCATGGTGAATGCGTCCAGCCTCATATCGCGAAGCACACCGCCAGCCTGCAGAACACCTACTTTGTTCTCAGACGCCCGTTCCGCGTCTCGCAGCGCTTCCTCCAGCCT
ACCTTAGCGCCCCGCGCTTCATCTCACGATTCATCCCGCATTTTGACTACCCGAGCTCACATACCTTCTCTGCAGAAGCTTCATTTCCCCTTACATCAAACTTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTAAATATTACAACTCTTCTTACTTCTTTTGTGCAAGGAGGTCCTCTCAAAGTAGCCAAGTGTGGAGTTTGTGGCTTGGTTGGTCATCCCAATGATAAATGCCCCGA
CTTGATTGAGGATGTTAATGTCATTCGTAAATATGACCCCCATGGTAATACATACAATTCGAGATGGAGAGACAACCCAAACTTGAAATGGGGGAATGACAACCAAAAGC
CCACCCAAGCAACATCCTCCTCTTCAAACCAAGGAGATGAAACAACAAATAACTCAACTCACTACCGCCATAAGCAAGTTGGAAGGAAAAGGCAAGCTTCCGGTCCAATC
GAACCATGCAAATGTGAGTGCCATTTCACTAAGAAGTGGTTGTCTCCAAAGAAGAAGGAAACACCCAAGGAAGAAGAACTTTTGGAGATGCTTAGAAAGGTTCTTACCGC
TACTAGATGCAATCCAACAAGTGCCAAGGTATGCAAAGTTTCTAAAGGAGTTGTGCACCAACAAGAGGAAATTAAAGAAAAGCCCATGCAAAATCACCCAGAGACCAAAA
CGCATGGTGAATGCGTCCAGCCTCATATCGCGAAGCACACCGCCAGCCTGCAGAACACCTACTTTGTTCTCAGACGCCCGTTCCGCGTCTCGCAGCGCTTCCTCCAGCCT
ACCTTAGCGCCCCGCGCTTCATCTCACGATTCATCCCGCATTTTGACTACCCGAGCTCACATACCTTCTCTGCAGAAGCTTCATTTCCCCTTACATCAAACTTAA
Protein sequenceShow/hide protein sequence
MLNITTLLTSFVQGGPLKVAKCGVCGLVGHPNDKCPDLIEDVNVIRKYDPHGNTYNSRWRDNPNLKWGNDNQKPTQATSSSSNQGDETTNNSTHYRHKQVGRKRQASGPI
EPCKCECHFTKKWLSPKKKETPKEEELLEMLRKVLTATRCNPTSAKVCKVSKGVVHQQEEIKEKPMQNHPETKTHGECVQPHIAKHTASLQNTYFVLRRPFRVSQRFLQP
TLAPRASSHDSSRILTTRAHIPSLQKLHFPLHQT