; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0003875 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003875
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptionprotein LATERAL ROOT PRIMORDIUM 1
Genome locationchr02:5957203..5959914
RNA-Seq ExpressionPI0003875
SyntenyPI0003875
Gene Ontology termsGO:0009734 - auxin-activated signaling pathway (biological process)
GO:0009851 - auxin biosynthetic process (biological process)
GO:0045893 - positive regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR006510 - Zinc finger, lateral root primordium type 1
IPR006511 - SHORT INTERNODES, C-terminal
IPR007818 - SHI protein family


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056003.1 protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo var. makuwa]1.7e-16298.37Show/hide
Query:  MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISRGGSGDGGGGGIHFNGNNLDGFGILGGGSSLNSGVGTCHDCG
        MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISRGG GD GGGGI FNGNNLDGFGILGGGSSLNSGVGTCHDCG
Subjt:  MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISRGGSGDGGGGGIHFNGNNLDGFGILGGGSSLNSGVGTCHDCG

Query:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK
        NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK
Subjt:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK

Query:  AKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLGDGGSTSSPVIDPADVYGSSATRGGGLGGGS
        AKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLGDGGSTSSPVIDP+DVYGSSATRGGGL GGS
Subjt:  AKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLGDGGSTSSPVIDPADVYGSSATRGGGLGGGS

Query:  GYGNSIN
        GYGNSIN
Subjt:  GYGNSIN

XP_008450344.1 PREDICTED: protein LATERAL ROOT PRIMORDIUM 1 [Cucumis melo]1.7e-16298.37Show/hide
Query:  MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISRGGSGDGGGGGIHFNGNNLDGFGILGGGSSLNSGVGTCHDCG
        MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISRGG GD GGGGI FNGNNLDGFGILGGGSSLNSGVGTCHDCG
Subjt:  MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISRGGSGDGGGGGIHFNGNNLDGFGILGGGSSLNSGVGTCHDCG

Query:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK
        NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK
Subjt:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK

Query:  AKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLGDGGSTSSPVIDPADVYGSSATRGGGLGGGS
        AKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLGDGGSTSSPVIDP+DVYGSSATRGGGL GGS
Subjt:  AKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLGDGGSTSSPVIDPADVYGSSATRGGGLGGGS

Query:  GYGNSIN
        GYGNSIN
Subjt:  GYGNSIN

XP_011660164.1 protein LATERAL ROOT PRIMORDIUM 1 [Cucumis sativus]5.6e-16197.39Show/hide
Query:  MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISRGGSGDGGGGGIHFNGNNLDGFGILGGGSSLNSGVGTCHDCG
        MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLL+GLAPSSVGIEEANLMISRGG GD GGGGI FNGNNLDGFGILGGGSSLNSGVGTCHDCG
Subjt:  MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISRGGSGDGGGGGIHFNGNNLDGFGILGGGSSLNSGVGTCHDCG

Query:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK
        NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK
Subjt:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK

Query:  AKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLGDGGSTSSPVIDPADVYGSSATRGGGLGGGS
        AKKLPEQIRAPAVFKCVRVTAVEGG+SGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFP MSNLHLGDGGSTSSPVIDPADVYGSS TRGGGL GGS
Subjt:  AKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLGDGGSTSSPVIDPADVYGSSATRGGGLGGGS

Query:  GYGNSIN
        GYGNSIN
Subjt:  GYGNSIN

XP_022974160.1 protein LATERAL ROOT PRIMORDIUM 1-like isoform X1 [Cucurbita maxima]3.1e-13583.54Show/hide
Query:  MWP---SSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISRGGSGD--GGGGGIHFNGNNLDGFGILGGGSSLNSGVGT
        MWP   SSRP+   Y HT  P  DMVGLMASG+GVG+SVLPLLTG+APSSVGIEE NLMISRGG GD  GGGGG+ F+GNN DGFG LGGGSSLNSGVGT
Subjt:  MWP---SSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISRGGSGD--GGGGGIHFNGNNLDGFGILGGGSSLNSGVGT

Query:  CHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAA-GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAA
        CHDCGNQAKKDC+HRRCRSCCKSRGFDC+THVKSTWVPAARRRERQ++ AA+ AAA GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPT SFD  SAA
Subjt:  CHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAA-GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAA

Query:  DMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHL---GDGGSTSSPVIDPADVYGSSAT
        DMS K+AKKLPEQ+RAPAVFKCVRVTAVEGG S GGNEYAYQAVVKIGGHVFKGYLYDHGVEAR+GFP +S+LHL   GDGGSTSSP+IDP+DVYGSSA 
Subjt:  DMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHL---GDGGSTSSPVIDPADVYGSSAT

Query:  RGGGLGGGSGYGNSIN
        RGGGL GGSGYGN IN
Subjt:  RGGGLGGGSGYGNSIN

XP_038878596.1 protein LATERAL ROOT PRIMORDIUM 1 [Benincasa hispida]1.3e-15292.86Show/hide
Query:  MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISR-GGSGDGGGGGIHFNGNNLDGFGILGGGSSLNSGVGTCHDC
        MWPSSRPL IGY HT AP  DMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISR GG G GGGGG+ FNGNNLDGFGILGGGSSLNSG GTCHDC
Subjt:  MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISR-GGSGDGGGGGIHFNGNNLDGFGILGGGSSLNSGVGTCHDC

Query:  GNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSK
        GNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQM+ AASD AAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMS K
Subjt:  GNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSK

Query:  KAKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLGDGGSTSSPVIDPADVYGSSATRGGGLGGG
        KAKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQA+VKIGGH+FKGYLYDHGVEARDGFPT+SNLHLGDGGSTSSPVIDPADVYGSSA RGG L GG
Subjt:  KAKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLGDGGSTSSPVIDPADVYGSSATRGGGLGGG

Query:  SGYGNSIN
        SGYGN IN
Subjt:  SGYGNSIN

TrEMBL top hitse value%identityAlignment
A0A0A0M099 Transcription factor2.7e-16197.39Show/hide
Query:  MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISRGGSGDGGGGGIHFNGNNLDGFGILGGGSSLNSGVGTCHDCG
        MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLL+GLAPSSVGIEEANLMISRGG GD GGGGI FNGNNLDGFGILGGGSSLNSGVGTCHDCG
Subjt:  MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISRGGSGDGGGGGIHFNGNNLDGFGILGGGSSLNSGVGTCHDCG

Query:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK
        NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK
Subjt:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK

Query:  AKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLGDGGSTSSPVIDPADVYGSSATRGGGLGGGS
        AKKLPEQIRAPAVFKCVRVTAVEGG+SGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFP MSNLHLGDGGSTSSPVIDPADVYGSS TRGGGL GGS
Subjt:  AKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLGDGGSTSSPVIDPADVYGSSATRGGGLGGGS

Query:  GYGNSIN
        GYGNSIN
Subjt:  GYGNSIN

A0A1S3BQ17 protein LATERAL ROOT PRIMORDIUM 18.4e-16398.37Show/hide
Query:  MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISRGGSGDGGGGGIHFNGNNLDGFGILGGGSSLNSGVGTCHDCG
        MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISRGG GD GGGGI FNGNNLDGFGILGGGSSLNSGVGTCHDCG
Subjt:  MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISRGGSGDGGGGGIHFNGNNLDGFGILGGGSSLNSGVGTCHDCG

Query:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK
        NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK
Subjt:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK

Query:  AKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLGDGGSTSSPVIDPADVYGSSATRGGGLGGGS
        AKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLGDGGSTSSPVIDP+DVYGSSATRGGGL GGS
Subjt:  AKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLGDGGSTSSPVIDPADVYGSSATRGGGLGGGS

Query:  GYGNSIN
        GYGNSIN
Subjt:  GYGNSIN

A0A5A7UJ85 Protein LATERAL ROOT PRIMORDIUM 18.4e-16398.37Show/hide
Query:  MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISRGGSGDGGGGGIHFNGNNLDGFGILGGGSSLNSGVGTCHDCG
        MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISRGG GD GGGGI FNGNNLDGFGILGGGSSLNSGVGTCHDCG
Subjt:  MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISRGGSGDGGGGGIHFNGNNLDGFGILGGGSSLNSGVGTCHDCG

Query:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK
        NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK
Subjt:  NQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKK

Query:  AKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLGDGGSTSSPVIDPADVYGSSATRGGGLGGGS
        AKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLGDGGSTSSPVIDP+DVYGSSATRGGGL GGS
Subjt:  AKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLGDGGSTSSPVIDPADVYGSSATRGGGLGGGS

Query:  GYGNSIN
        GYGNSIN
Subjt:  GYGNSIN

A0A6J1F4X3 protein LATERAL ROOT PRIMORDIUM 1-like isoform X14.4e-13583.12Show/hide
Query:  MWP---SSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISRGGSGDGGGGGIHFNGNNLDGFGILGGGSSLNSGVGTCH
        MWP   S+RP+   Y HT  P  DMVGLMASG+GVG+SVLPLLTGLAPSSVGIEE NLMISRGG G GGGGG+ F+GNN DGFG LGGGSSLNSGVGTCH
Subjt:  MWP---SSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISRGGSGDGGGGGIHFNGNNLDGFGILGGGSSLNSGVGTCH

Query:  DCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAA-GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADM
        DCGNQAKKDC+HRRCRSCCKSRGFDC+THVKSTWVPAARRRERQ++ AA+ AAA GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPT SFD  SAADM
Subjt:  DCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAA-GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADM

Query:  SSKKAKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHL---GDGGSTSSPVIDPADVYGSSATRG
        S K+AKKLPEQ+RAPAVFKCVRVTAVEGG + GGNEYAYQAVVKIGGHVFKGYLYDHGVEAR+GFP +S+LHL   GDGGSTSSP+IDP+DVYGSSA RG
Subjt:  SSKKAKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHL---GDGGSTSSPVIDPADVYGSSATRG

Query:  GGLGGGSGYGNSIN
        GGL G SGYGN IN
Subjt:  GGLGGGSGYGNSIN

A0A6J1ID91 protein LATERAL ROOT PRIMORDIUM 1-like isoform X11.5e-13583.54Show/hide
Query:  MWP---SSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISRGGSGD--GGGGGIHFNGNNLDGFGILGGGSSLNSGVGT
        MWP   SSRP+   Y HT  P  DMVGLMASG+GVG+SVLPLLTG+APSSVGIEE NLMISRGG GD  GGGGG+ F+GNN DGFG LGGGSSLNSGVGT
Subjt:  MWP---SSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISRGGSGD--GGGGGIHFNGNNLDGFGILGGGSSLNSGVGT

Query:  CHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAA-GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAA
        CHDCGNQAKKDC+HRRCRSCCKSRGFDC+THVKSTWVPAARRRERQ++ AA+ AAA GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPT SFD  SAA
Subjt:  CHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAA-GGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAA

Query:  DMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHL---GDGGSTSSPVIDPADVYGSSAT
        DMS K+AKKLPEQ+RAPAVFKCVRVTAVEGG S GGNEYAYQAVVKIGGHVFKGYLYDHGVEAR+GFP +S+LHL   GDGGSTSSP+IDP+DVYGSSA 
Subjt:  DMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHL---GDGGSTSSPVIDPADVYGSSAT

Query:  RGGGLGGGSGYGNSIN
        RGGGL GGSGYGN IN
Subjt:  RGGGLGGGSGYGNSIN

SwissProt top hitse value%identityAlignment
O65517 Protein SHI RELATED SEQUENCE 21.9e-3143.28Show/hide
Query:  TCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAA
        +C DCGNQAKKDC+H RCR+CCKSRGFDCSTHV+STW+P ARRRERQ     S +  GG S    +GG    +           ++S++  PS  A    
Subjt:  TCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAA

Query:  DMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLGDGGSTSSPVIDPADVYGSSATRGG
          +S      P ++ + A+F+CV+++ V+    GG  +YAYQ  V IGGH+FKG LYD G       P  S +  G GGS         D   SSA  GG
Subjt:  DMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLGDGGSTSSPVIDPADVYGSSATRGG

Query:  G
        G
Subjt:  G

Q94CK9 Protein LATERAL ROOT PRIMORDIUM 11.6e-5750.17Show/hide
Query:  ASGFGVGVSVLPLLTGLAPSSVGIEEANLMIS------RGGSGDGGGGGIHFNGNNLDGFGIL---GGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCK
        A+   +GV V+PLLT   P    +E++++         +  + +     +HF   N    G      G  S  SG  TC DCGNQAKK+C  RRCR+CCK
Subjt:  ASGFGVGVSVLPLLTGLAPSSVGIEEANLMIS------RGGSGDGGGGGIHFNGNNLDGFGIL---GGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCK

Query:  SRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAV
        SRGFDCSTHVKSTWV AARRRERQ+M   ++  A G+S  ++SG KKPR++ S    Q    SHTSTSNTP  SF+ SS+        +  P Q+RA AV
Subjt:  SRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAV

Query:  FKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLG------DGGSTSSPVIDPAD-VYGSSATRGGGLGGG
        FKCVRVTAVE G     +EYAYQAVVKIGGHVFKG+LYD G+E ++GFP+MS+LHLG      +G S S+P++DP + VYG     GGG GGG
Subjt:  FKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLG------DGGSTSSPVIDPAD-VYGSSATRGGGLGGG

Q9LQZ5 Protein SHI RELATED SEQUENCE 53.4e-2841.29Show/hide
Query:  GGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSH------
        GG +    G   C DCGNQAKKDC H RCR+CCKSRGF C THVKSTWVPAA+RRER  +   +       SS  T   K+ R  +     +        
Subjt:  GGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSH------

Query:  -TSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLGDGGSTS
         ++ +NT   + +++S  ++S    + LP ++ +PA+F+CVRV+++E         YAYQ  V IGGH+FKG LYD G E +D      N HL    ST+
Subjt:  -TSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLGDGGSTS

Query:  S
        +
Subjt:  S

Q9SD40 Protein SHI RELATED SEQUENCE 11.2e-2835.79Show/hide
Query:  ASGFGVGVS---VLPLLTGLAPSSVGIEEANLMISRGGSGDGGGGGIHFNGNNLDGFGILGGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCKSRGFDC
        A+G GVG S      +    + +  G   A +MI  GGSG GG GG+                        +C DCGNQAKKDCSH RCR+CCKSRGF+C
Subjt:  ASGFGVGVS---VLPLLTGLAPSSVGIEEANLMISRGGSGDGGGGGIHFNGNNLDGFGILGGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCKSRGFDC

Query:  STHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAVFKCVRVTAVE
        STHV+STWVPAA+RRERQ   A                  + +L   ++    H       + S   +     S  +    P ++ + AVF+CVRV++VE
Subjt:  STHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAVFKCVRVTAVE

Query:  GGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDG----FPTMSNLHLGDGGSTSSPVIDPADV----YGSSATRGGGLGGGS
         G      E+AYQ  V IGGH+FKG LYD G  +  G             G GG+    +I    V      SS    GG+G  S
Subjt:  GGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDG----FPTMSNLHLGDGGSTSSPVIDPADV----YGSSATRGGGLGGGS

Q9XGX0 Protein SHORT INTERNODES2.0e-2838.52Show/hide
Query:  GLAPSSVGIEEAN---LMISRGGSGDGGGGGIHFNGNNLDGFGILGGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRR
        G+ PS+  + E +   LM+ R GSG GG                            +C DCGNQ+KKDCSH RCR+CCKSRG DC THVKSTWVPAA+RR
Subjt:  GLAPSSVGIEEAN---LMISRGGSGDGGGGGIHFNGNNLDGFGILGGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRR

Query:  ERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAV
        ERQ   +               GG  P+    +    S TS + T  PS + S        +    P ++ + AVF+CVRV++V+        EYAY+  
Subjt:  ERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAV

Query:  VKIGGHVFKGYLYDHGVEARD----GFPTMSNLHLGDGGSTSSP
        V IGGHVFKG LYD G   R     G   ++ +  G   S+SSP
Subjt:  VKIGGHVFKGYLYDHGVEARD----GFPTMSNLHLGDGGSTSSP

Arabidopsis top hitse value%identityAlignment
AT3G51060.1 Lateral root primordium (LRP) protein-related8.4e-3035.79Show/hide
Query:  ASGFGVGVS---VLPLLTGLAPSSVGIEEANLMISRGGSGDGGGGGIHFNGNNLDGFGILGGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCKSRGFDC
        A+G GVG S      +    + +  G   A +MI  GGSG GG GG+                        +C DCGNQAKKDCSH RCR+CCKSRGF+C
Subjt:  ASGFGVGVS---VLPLLTGLAPSSVGIEEANLMISRGGSGDGGGGGIHFNGNNLDGFGILGGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCKSRGFDC

Query:  STHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAVFKCVRVTAVE
        STHV+STWVPAA+RRERQ   A                  + +L   ++    H       + S   +     S  +    P ++ + AVF+CVRV++VE
Subjt:  STHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAVFKCVRVTAVE

Query:  GGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDG----FPTMSNLHLGDGGSTSSPVIDPADV----YGSSATRGGGLGGGS
         G      E+AYQ  V IGGH+FKG LYD G  +  G             G GG+    +I    V      SS    GG+G  S
Subjt:  GGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDG----FPTMSNLHLGDGGSTSSPVIDPADV----YGSSATRGGGLGGGS

AT4G36260.1 Lateral root primordium (LRP) protein-related1.4e-3243.28Show/hide
Query:  TCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAA
        +C DCGNQAKKDC+H RCR+CCKSRGFDCSTHV+STW+P ARRRERQ     S +  GG S    +GG    +           ++S++  PS  A    
Subjt:  TCHDCGNQAKKDCSHRRCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAA

Query:  DMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLGDGGSTSSPVIDPADVYGSSATRGG
          +S      P ++ + A+F+CV+++ V+    GG  +YAYQ  V IGGH+FKG LYD G       P  S +  G GGS         D   SSA  GG
Subjt:  DMSSKKAKKLPEQIRAPAVFKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLGDGGSTSSPVIDPADVYGSSATRGG

Query:  G
        G
Subjt:  G

AT5G12330.1 Lateral root primordium (LRP) protein-related1.1e-5850.17Show/hide
Query:  ASGFGVGVSVLPLLTGLAPSSVGIEEANLMIS------RGGSGDGGGGGIHFNGNNLDGFGIL---GGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCK
        A+   +GV V+PLLT   P    +E++++         +  + +     +HF   N    G      G  S  SG  TC DCGNQAKK+C  RRCR+CCK
Subjt:  ASGFGVGVSVLPLLTGLAPSSVGIEEANLMIS------RGGSGDGGGGGIHFNGNNLDGFGIL---GGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCK

Query:  SRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAV
        SRGFDCSTHVKSTWV AARRRERQ+M   ++  A G+S  ++SG KKPR++ S    Q    SHTSTSNTP  SF+ SS+        +  P Q+RA AV
Subjt:  SRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAV

Query:  FKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLG------DGGSTSSPVIDPAD-VYGSSATRGGGLGGG
        FKCVRVTAVE G     +EYAYQAVVKIGGHVFKG+LYD G+E ++GFP+MS+LHLG      +G S S+P++DP + VYG     GGG GGG
Subjt:  FKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLG------DGGSTSSPVIDPAD-VYGSSATRGGGLGGG

AT5G12330.2 Lateral root primordium (LRP) protein-related1.1e-5850.17Show/hide
Query:  ASGFGVGVSVLPLLTGLAPSSVGIEEANLMIS------RGGSGDGGGGGIHFNGNNLDGFGIL---GGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCK
        A+   +GV V+PLLT   P    +E++++         +  + +     +HF   N    G      G  S  SG  TC DCGNQAKK+C  RRCR+CCK
Subjt:  ASGFGVGVSVLPLLTGLAPSSVGIEEANLMIS------RGGSGDGGGGGIHFNGNNLDGFGIL---GGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCK

Query:  SRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAV
        SRGFDCSTHVKSTWV AARRRERQ+M   ++  A G+S  ++SG KKPR++ S    Q    SHTSTSNTP  SF+ SS+        +  P Q+RA AV
Subjt:  SRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAV

Query:  FKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLG------DGGSTSSPVIDPAD-VYGSSATRGGGLGGG
        FKCVRVTAVE G     +EYAYQAVVKIGGHVFKG+LYD G+E ++GFP+MS+LHLG      +G S S+P++DP + VYG     GGG GGG
Subjt:  FKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLG------DGGSTSSPVIDPAD-VYGSSATRGGGLGGG

AT5G12330.4 Lateral root primordium (LRP) protein-related1.1e-5850.17Show/hide
Query:  ASGFGVGVSVLPLLTGLAPSSVGIEEANLMIS------RGGSGDGGGGGIHFNGNNLDGFGIL---GGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCK
        A+   +GV V+PLLT   P    +E++++         +  + +     +HF   N    G      G  S  SG  TC DCGNQAKK+C  RRCR+CCK
Subjt:  ASGFGVGVSVLPLLTGLAPSSVGIEEANLMIS------RGGSGDGGGGGIHFNGNNLDGFGIL---GGGSSLNSGVGTCHDCGNQAKKDCSHRRCRSCCK

Query:  SRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAV
        SRGFDCSTHVKSTWV AARRRERQ+M   ++  A G+S  ++SG KKPR++ S    Q    SHTSTSNTP  SF+ SS+        +  P Q+RA AV
Subjt:  SRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIAS----QTTTNSHTSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAV

Query:  FKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLG------DGGSTSSPVIDPAD-VYGSSATRGGGLGGG
        FKCVRVTAVE G     +EYAYQAVVKIGGHVFKG+LYD G+E ++GFP+MS+LHLG      +G S S+P++DP + VYG     GGG GGG
Subjt:  FKCVRVTAVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLG------DGGSTSSPVIDPAD-VYGSSATRGGGLGGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGGCCCTCATCCAGACCCCTCACCATCGGTTATAACCACACACCGGCGCCGACGCCGGACATGGTGGGTCTCATGGCCTCAGGCTTCGGAGTCGGCGTTAGCGTTTT
GCCCCTTCTTACCGGCCTCGCGCCGTCAAGTGTAGGAATTGAAGAAGCTAATTTAATGATCAGCCGTGGTGGCAGCGGCGACGGCGGTGGCGGCGGAATTCACTTCAATG
GAAATAATTTAGATGGGTTTGGGATTTTGGGAGGTGGGTCGAGTTTGAATTCGGGCGTCGGAACTTGCCATGATTGTGGGAACCAAGCCAAGAAAGATTGTAGTCACCGG
CGGTGCCGGAGCTGCTGTAAAAGCCGTGGATTTGATTGTTCAACTCACGTGAAAAGCACGTGGGTGCCGGCAGCTCGAAGGAGAGAACGTCAGATGATGGGTGCGGCGTC
GGATGCAGCAGCCGGCGGCACCTCTTCGGGGTCTACGTCCGGCGGGAAGAAGCCAAGGTTGATTGCTTCACAGACGACTACTAATTCTCATACTTCCACTTCAAATACTC
CAACGCCAAGCTTTGACGCTTCCTCAGCCGCCGATATGAGTAGTAAAAAAGCAAAGAAACTGCCGGAACAAATCCGAGCGCCGGCAGTGTTCAAATGCGTGCGGGTAACG
GCAGTGGAGGGCGGCAGTAGCGGCGGAGGGAATGAATATGCATATCAAGCCGTCGTGAAGATCGGCGGCCATGTTTTTAAAGGTTATTTGTACGACCATGGAGTAGAAGC
TAGAGATGGGTTTCCGACGATGTCAAATTTGCATCTTGGGGATGGCGGTTCGACTTCGTCACCGGTCATTGATCCTGCTGATGTTTACGGCAGCTCCGCCACCCGCGGTG
GGGGACTGGGTGGGGGTTCAGGCTATGGTAATTCCATAAATTGA
mRNA sequenceShow/hide mRNA sequence
CAAATTCATTCACAAACCAAATTCATCCTTTCTCTCAATTCTCATTTCTCCTTCTCTCTAAATTACCAAATAAATAAATAACATTTCATAGATCCATGTTGCTTCATCAG
TAAACCTTAGATCAAATTTAGAATTTTTTTTTTATAAAATTTTTTTAATTTAGGGTTTTTGTTCCTCTCCGCCGGAGATTCACCAGCTGTGGCTGCCGCACGCCGTCTTC
CTTCCGATTCCGGTGCCTTCGCCGACTGGGTGGCTCCTCCCTCTGCCATCGTCGCCGATGAACTCTCCCTCGGTTTCAATTCCGCCTCCTCCATTCCACCACCCCGGATG
TGGCCCTCATCCAGACCCCTCACCATCGGTTATAACCACACACCGGCGCCGACGCCGGACATGGTGGGTCTCATGGCCTCAGGCTTCGGAGTCGGCGTTAGCGTTTTGCC
CCTTCTTACCGGCCTCGCGCCGTCAAGTGTAGGAATTGAAGAAGCTAATTTAATGATCAGCCGTGGTGGCAGCGGCGACGGCGGTGGCGGCGGAATTCACTTCAATGGAA
ATAATTTAGATGGGTTTGGGATTTTGGGAGGTGGGTCGAGTTTGAATTCGGGCGTCGGAACTTGCCATGATTGTGGGAACCAAGCCAAGAAAGATTGTAGTCACCGGCGG
TGCCGGAGCTGCTGTAAAAGCCGTGGATTTGATTGTTCAACTCACGTGAAAAGCACGTGGGTGCCGGCAGCTCGAAGGAGAGAACGTCAGATGATGGGTGCGGCGTCGGA
TGCAGCAGCCGGCGGCACCTCTTCGGGGTCTACGTCCGGCGGGAAGAAGCCAAGGTTGATTGCTTCACAGACGACTACTAATTCTCATACTTCCACTTCAAATACTCCAA
CGCCAAGCTTTGACGCTTCCTCAGCCGCCGATATGAGTAGTAAAAAAGCAAAGAAACTGCCGGAACAAATCCGAGCGCCGGCAGTGTTCAAATGCGTGCGGGTAACGGCA
GTGGAGGGCGGCAGTAGCGGCGGAGGGAATGAATATGCATATCAAGCCGTCGTGAAGATCGGCGGCCATGTTTTTAAAGGTTATTTGTACGACCATGGAGTAGAAGCTAG
AGATGGGTTTCCGACGATGTCAAATTTGCATCTTGGGGATGGCGGTTCGACTTCGTCACCGGTCATTGATCCTGCTGATGTTTACGGCAGCTCCGCCACCCGCGGTGGGG
GACTGGGTGGGGGTTCAGGCTATGGTAATTCCATAAATTGATCCATATTGTTTAAACATTAATTTTAATTTCAATGTTGGGTTTATAGCTTTTGAATTTGTTTAGTGGAA
AAATAAGGGATAGGAGAGGAGTCCTTACTTTATGCATGGTTTATTTTTATTTGTATATTTATATTGCTTACAAATATAAATATATTCTATTAATATTTCATTTTGAA
Protein sequenceShow/hide protein sequence
MWPSSRPLTIGYNHTPAPTPDMVGLMASGFGVGVSVLPLLTGLAPSSVGIEEANLMISRGGSGDGGGGGIHFNGNNLDGFGILGGGSSLNSGVGTCHDCGNQAKKDCSHR
RCRSCCKSRGFDCSTHVKSTWVPAARRRERQMMGAASDAAAGGTSSGSTSGGKKPRLIASQTTTNSHTSTSNTPTPSFDASSAADMSSKKAKKLPEQIRAPAVFKCVRVT
AVEGGSSGGGNEYAYQAVVKIGGHVFKGYLYDHGVEARDGFPTMSNLHLGDGGSTSSPVIDPADVYGSSATRGGGLGGGSGYGNSIN