; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0003904 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003904
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr11:16278737..16279977
RNA-Seq ExpressionPI0003904
SyntenyPI0003904
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.8e-2272.58Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPT
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+ T
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPT
KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]5.2e-2270.97Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPT
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDP GNTYN+GWRDNPNLRWGN+NQ+ T
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPT
KAA0053321.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.8e-2272.88Show/hide
Query:  VKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPT
        +KV KCGVCGL+GHPNDKCP+++E+ N++R+YDP GNTYN+GWRDNPNLRWGN+NQ+ T
Subjt:  VKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPT
TYK19600.1 retrotransposon gag protein [Cucumis melo var. makuwa]6.8e-2273.33Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ
XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]5.2e-2270.97Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPT
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDP GNTYN+GWRDNPNLRWGN+NQ+ T
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPT
TrEMBL top hitse value%identityAlignment
A0A1S4E3R2 uncharacterized protein LOC1079919102.5e-2270.97Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPT
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDP GNTYN+GWRDNPNLRWGN+NQ+ T
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPT
A0A5A7UID2 Retrotransposon gag protein3.3e-2272.88Show/hide
Query:  VKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPT
        +KV KCGVCGL+GHPNDKCP+++E+ N++R+YDP GNTYN+GWRDNPNLRWGN+NQ+ T
Subjt:  VKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPT
A0A5D3CRR8 Retrotransposon gag protein8.7e-2372.58Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPT
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+ T
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPT
A0A5D3D815 Retrotransposon gag protein3.3e-2273.33Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ
        G  +KV KCGVCGL+GHPNDKCP+++E+ N++RKYDP GNTYN+GWRDNPNLRWGN+NQ+
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQ
A0A5D3DCG3 Retrotransposon gag protein2.5e-2270.97Show/hide
Query:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPT
        G  +KV KCGVCGL+GHPNDKCP+++E+ N+++KYDP GNTYN+GWRDNPNLRWGN+NQ+ T
Subjt:  GGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCGTTGCCGGGGAGCGACGGTGGAAATGTGAAAGTTGCCAAATGTGGAGTATGTGGATTAATAGGACATCCCAATGATAAGTGCCCTGACCTAGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCCCAAGGAAATACTTACAACGCCGGTTGGAGAGACAATCCAAACCTTAGATGGGGAAACAATAATCAACAACCCACGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGCCGTTGCCGGGGAGCGACGGTGGAAATGTGAAAGTTGCCAAATGTGGAGTATGTGGATTAATAGGACATCCCAATGATAAGTGCCCTGACCTAGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCCCAAGGAAATACTTACAACGCCGGTTGGAGAGACAATCCAAACCTTAGATGGGGAAACAATAATCAACAACCCACGTAA
Protein sequenceShow/hide protein sequence
MAPLPGSDGGNVKVAKCGVCGLIGHPNDKCPDLVEEANVIRKYDPQGNTYNAGWRDNPNLRWGNNNQQPT