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PI0003909 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003909
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
Genome locationchr10:11223439..11224053
RNA-Seq ExpressionPI0003909
SyntenyPI0003909
Gene Ontology termsNA
InterPro domainsIPR026960 - Reverse transcriptase zinc-binding domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037436.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.6e-4246.11Show/hide
Query:  MKAPWRSIIKNIDWFIRQSSWNINDGEGLSFWHGNWNALSPLAKSFPRLFAISKNQNATVQENWNISTNEWSFDQRRPLNERELISWSNLKSSLPKPDPT
        MKAPWR IIK I WF   SSW I DGE LSFWH NW A   L+ ++PRL+ +SK QNAT++E W+ +TN+W+   RRPLN+RE+  W+NLK  L      
Subjt:  MKAPWRSIIKNIDWFIRQSSWNINDGEGLSFWHGNWNALSPLAKSFPRLFAISKNQNATVQENWNISTNEWSFDQRRPLNERELISWSNLKSSLPKPDPT

Query:  KGRSFLVWKPSATKEFSVASAKQALSSHQSDTNGANNLSLFDTMWSSKIPKEIKFFLWTVLHGKLNTLEMLQQKLQGTCL
         G++ ++W P+    ++ ASAK+ L S +   N  N  + ++T+W SK+PK+ KFF+W++ H  +NT ++LQ++L  T L
Subjt:  KGRSFLVWKPSATKEFSVASAKQALSSHQSDTNGANNLSLFDTMWSSKIPKEIKFFLWTVLHGKLNTLEMLQQKLQGTCL

KAA0058554.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]1.6e-3943.89Show/hide
Query:  KAPWRSIIKNIDWFIRQSSWNINDGEGLSFWHGNWNALSPLAKSFPRLFAISKNQNATVQENWNISTNEWSFDQRRPLNERELISWSNLKSSLPKPDPTK
        KAPWRSII NIDWF     W++N+G+ +SFW+ NW+    L+ ++PRLFA+S ++ +++++ WN + N+W    RR LN+REL +W  +  +LP P   +
Subjt:  KAPWRSIIKNIDWFIRQSSWNINDGEGLSFWHGNWNALSPLAKSFPRLFAISKNQNATVQENWNISTNEWSFDQRRPLNERELISWSNLKSSLPKPDPTK

Query:  GRSFLVWKPSATKEFSVASAKQALSSHQSDTNGAN-NLSLFDTMWSSKIPKEIKFFLWTVLHGKLNTLEMLQQKLQGTCL
        G S   W P + K FS+ASAK  + SHQ D + A+  + L D +W S IP +IKFF+W ++  KLNT+E++QQ++  T L
Subjt:  GRSFLVWKPSATKEFSVASAKQALSSHQSDTNGAN-NLSLFDTMWSSKIPKEIKFFLWTVLHGKLNTLEMLQQKLQGTCL

KAA0058980.1 uncharacterized protein E6C27_scaffold98G001710 [Cucumis melo var. makuwa]1.6e-3941.34Show/hide
Query:  KAPWRSIIKNIDWFIRQSSWNINDGEGLSFWHGNWNALSPLAKSFPRLFAISKNQNATVQENWNISTNEWSFDQRRPLNERELISWSNLKSSLPKPDPTK
        KAPWRSII NIDWF    SW++N+G+ +SFW+ NW+    L+ ++PRLFA++ ++  +V++ WN   N+W+ + RR LN+RE  +W  +   LP P P +
Subjt:  KAPWRSIIKNIDWFIRQSSWNINDGEGLSFWHGNWNALSPLAKSFPRLFAISKNQNATVQENWNISTNEWSFDQRRPLNERELISWSNLKSSLPKPDPTK

Query:  GRSFLVWKPSATKEFSVASAKQALSSHQSDTNGANNLSLFDTMWSSKIPKEIKFFLWTVLHGKLNTLEMLQQKLQGTCL
        G S   W P   K FS+ASAK  +S     T+G + + L + +W S IP +IKFF+W ++  +++T+E++QQ++  T L
Subjt:  GRSFLVWKPSATKEFSVASAKQALSSHQSDTNGANNLSLFDTMWSSKIPKEIKFFLWTVLHGKLNTLEMLQQKLQGTCL

TYK00226.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]4.6e-4246.11Show/hide
Query:  MKAPWRSIIKNIDWFIRQSSWNINDGEGLSFWHGNWNALSPLAKSFPRLFAISKNQNATVQENWNISTNEWSFDQRRPLNERELISWSNLKSSLPKPDPT
        MKAPWR IIK I WF   SSW I DGE LSFWH NW A   L+ ++PRL+ +SK QNAT++E W+ +TN+W+   RRPLN+RE+  W+NLK  L      
Subjt:  MKAPWRSIIKNIDWFIRQSSWNINDGEGLSFWHGNWNALSPLAKSFPRLFAISKNQNATVQENWNISTNEWSFDQRRPLNERELISWSNLKSSLPKPDPT

Query:  KGRSFLVWKPSATKEFSVASAKQALSSHQSDTNGANNLSLFDTMWSSKIPKEIKFFLWTVLHGKLNTLEMLQQKLQGTCL
         G++ ++W P+    ++ ASAK+ L S +   N  N  + ++T+W SK+PK+ KFF+W++ H  +NT ++LQ++L  T L
Subjt:  KGRSFLVWKPSATKEFSVASAKQALSSHQSDTNGANNLSLFDTMWSSKIPKEIKFFLWTVLHGKLNTLEMLQQKLQGTCL

TYK11012.1 uncharacterized protein E5676_scaffold874G00540 [Cucumis melo var. makuwa]1.6e-3941.34Show/hide
Query:  KAPWRSIIKNIDWFIRQSSWNINDGEGLSFWHGNWNALSPLAKSFPRLFAISKNQNATVQENWNISTNEWSFDQRRPLNERELISWSNLKSSLPKPDPTK
        KAPWRSII NIDWF    SW++N+G+ +SFW+ NW+    L+ ++PRLFA++ ++  +V++ WN   N+W+ + RR LN+RE  +W  +   LP P P +
Subjt:  KAPWRSIIKNIDWFIRQSSWNINDGEGLSFWHGNWNALSPLAKSFPRLFAISKNQNATVQENWNISTNEWSFDQRRPLNERELISWSNLKSSLPKPDPTK

Query:  GRSFLVWKPSATKEFSVASAKQALSSHQSDTNGANNLSLFDTMWSSKIPKEIKFFLWTVLHGKLNTLEMLQQKLQGTCL
        G S   W P   K FS+ASAK  +S     T+G + + L + +W S IP +IKFF+W ++  +++T+E++QQ++  T L
Subjt:  GRSFLVWKPSATKEFSVASAKQALSSHQSDTNGANNLSLFDTMWSSKIPKEIKFFLWTVLHGKLNTLEMLQQKLQGTCL

TrEMBL top hitse value%identityAlignment
A0A5A7T5L3 LINE-1 retrotransposable element ORF2 protein2.2e-4246.11Show/hide
Query:  MKAPWRSIIKNIDWFIRQSSWNINDGEGLSFWHGNWNALSPLAKSFPRLFAISKNQNATVQENWNISTNEWSFDQRRPLNERELISWSNLKSSLPKPDPT
        MKAPWR IIK I WF   SSW I DGE LSFWH NW A   L+ ++PRL+ +SK QNAT++E W+ +TN+W+   RRPLN+RE+  W+NLK  L      
Subjt:  MKAPWRSIIKNIDWFIRQSSWNINDGEGLSFWHGNWNALSPLAKSFPRLFAISKNQNATVQENWNISTNEWSFDQRRPLNERELISWSNLKSSLPKPDPT

Query:  KGRSFLVWKPSATKEFSVASAKQALSSHQSDTNGANNLSLFDTMWSSKIPKEIKFFLWTVLHGKLNTLEMLQQKLQGTCL
         G++ ++W P+    ++ ASAK+ L S +   N  N  + ++T+W SK+PK+ KFF+W++ H  +NT ++LQ++L  T L
Subjt:  KGRSFLVWKPSATKEFSVASAKQALSSHQSDTNGANNLSLFDTMWSSKIPKEIKFFLWTVLHGKLNTLEMLQQKLQGTCL

A0A5A7UTS4 LINE-1 retrotransposable element ORF2 protein7.8e-4043.89Show/hide
Query:  KAPWRSIIKNIDWFIRQSSWNINDGEGLSFWHGNWNALSPLAKSFPRLFAISKNQNATVQENWNISTNEWSFDQRRPLNERELISWSNLKSSLPKPDPTK
        KAPWRSII NIDWF     W++N+G+ +SFW+ NW+    L+ ++PRLFA+S ++ +++++ WN + N+W    RR LN+REL +W  +  +LP P   +
Subjt:  KAPWRSIIKNIDWFIRQSSWNINDGEGLSFWHGNWNALSPLAKSFPRLFAISKNQNATVQENWNISTNEWSFDQRRPLNERELISWSNLKSSLPKPDPTK

Query:  GRSFLVWKPSATKEFSVASAKQALSSHQSDTNGAN-NLSLFDTMWSSKIPKEIKFFLWTVLHGKLNTLEMLQQKLQGTCL
        G S   W P + K FS+ASAK  + SHQ D + A+  + L D +W S IP +IKFF+W ++  KLNT+E++QQ++  T L
Subjt:  GRSFLVWKPSATKEFSVASAKQALSSHQSDTNGAN-NLSLFDTMWSSKIPKEIKFFLWTVLHGKLNTLEMLQQKLQGTCL

A0A5A7UV84 Reverse transcriptase domain-containing protein7.8e-4041.34Show/hide
Query:  KAPWRSIIKNIDWFIRQSSWNINDGEGLSFWHGNWNALSPLAKSFPRLFAISKNQNATVQENWNISTNEWSFDQRRPLNERELISWSNLKSSLPKPDPTK
        KAPWRSII NIDWF    SW++N+G+ +SFW+ NW+    L+ ++PRLFA++ ++  +V++ WN   N+W+ + RR LN+RE  +W  +   LP P P +
Subjt:  KAPWRSIIKNIDWFIRQSSWNINDGEGLSFWHGNWNALSPLAKSFPRLFAISKNQNATVQENWNISTNEWSFDQRRPLNERELISWSNLKSSLPKPDPTK

Query:  GRSFLVWKPSATKEFSVASAKQALSSHQSDTNGANNLSLFDTMWSSKIPKEIKFFLWTVLHGKLNTLEMLQQKLQGTCL
        G S   W P   K FS+ASAK  +S     T+G + + L + +W S IP +IKFF+W ++  +++T+E++QQ++  T L
Subjt:  GRSFLVWKPSATKEFSVASAKQALSSHQSDTNGANNLSLFDTMWSSKIPKEIKFFLWTVLHGKLNTLEMLQQKLQGTCL

A0A5D3BPP1 LINE-1 retrotransposable element ORF2 protein2.2e-4246.11Show/hide
Query:  MKAPWRSIIKNIDWFIRQSSWNINDGEGLSFWHGNWNALSPLAKSFPRLFAISKNQNATVQENWNISTNEWSFDQRRPLNERELISWSNLKSSLPKPDPT
        MKAPWR IIK I WF   SSW I DGE LSFWH NW A   L+ ++PRL+ +SK QNAT++E W+ +TN+W+   RRPLN+RE+  W+NLK  L      
Subjt:  MKAPWRSIIKNIDWFIRQSSWNINDGEGLSFWHGNWNALSPLAKSFPRLFAISKNQNATVQENWNISTNEWSFDQRRPLNERELISWSNLKSSLPKPDPT

Query:  KGRSFLVWKPSATKEFSVASAKQALSSHQSDTNGANNLSLFDTMWSSKIPKEIKFFLWTVLHGKLNTLEMLQQKLQGTCL
         G++ ++W P+    ++ ASAK+ L S +   N  N  + ++T+W SK+PK+ KFF+W++ H  +NT ++LQ++L  T L
Subjt:  KGRSFLVWKPSATKEFSVASAKQALSSHQSDTNGANNLSLFDTMWSSKIPKEIKFFLWTVLHGKLNTLEMLQQKLQGTCL

A0A5D3CI86 Reverse transcriptase domain-containing protein7.8e-4041.34Show/hide
Query:  KAPWRSIIKNIDWFIRQSSWNINDGEGLSFWHGNWNALSPLAKSFPRLFAISKNQNATVQENWNISTNEWSFDQRRPLNERELISWSNLKSSLPKPDPTK
        KAPWRSII NIDWF    SW++N+G+ +SFW+ NW+    L+ ++PRLFA++ ++  +V++ WN   N+W+ + RR LN+RE  +W  +   LP P P +
Subjt:  KAPWRSIIKNIDWFIRQSSWNINDGEGLSFWHGNWNALSPLAKSFPRLFAISKNQNATVQENWNISTNEWSFDQRRPLNERELISWSNLKSSLPKPDPTK

Query:  GRSFLVWKPSATKEFSVASAKQALSSHQSDTNGANNLSLFDTMWSSKIPKEIKFFLWTVLHGKLNTLEMLQQKLQGTCL
        G S   W P   K FS+ASAK  +S     T+G + + L + +W S IP +IKFF+W ++  +++T+E++QQ++  T L
Subjt:  GRSFLVWKPSATKEFSVASAKQALSSHQSDTNGANNLSLFDTMWSSKIPKEIKFFLWTVLHGKLNTLEMLQQKLQGTCL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAAGCTCCTTGGAGATCCATCATAAAAAATATTGACTGGTTTATAAGGCAATCTTCTTGGAACATCAATGATGGTGAAGGACTCTCCTTCTGGCATGGTAATTGGAA
TGCTCTTAGTCCTTTGGCAAAGTCTTTTCCCAGATTATTTGCAATTTCAAAAAATCAAAATGCAACAGTTCAGGAGAATTGGAATATTTCGACTAATGAATGGAGCTTTG
ATCAAAGAAGACCGCTAAATGAAAGAGAGTTGATTTCCTGGTCTAATCTAAAAAGCTCTTTACCCAAGCCTGACCCTACCAAAGGAAGAAGTTTCCTAGTGTGGAAACCA
AGTGCAACCAAGGAGTTCTCAGTGGCATCAGCAAAACAGGCCCTCAGCAGTCATCAGTCTGATACCAATGGAGCAAATAATCTTTCCCTATTTGATACCATGTGGAGTTC
AAAGATTCCAAAGGAAATCAAATTCTTCCTTTGGACTGTCCTCCATGGAAAATTAAATACTCTTGAAATGCTCCAACAAAAACTTCAAGGAACTTGCTTAAATCTCAAAG
TGAATGCCAGGACCATCTGTTTGTTAATTGCAAACTTGCCACCTCTTTATGGAAAAATCTCCTAG
mRNA sequenceShow/hide mRNA sequence
ATGAAAGCTCCTTGGAGATCCATCATAAAAAATATTGACTGGTTTATAAGGCAATCTTCTTGGAACATCAATGATGGTGAAGGACTCTCCTTCTGGCATGGTAATTGGAA
TGCTCTTAGTCCTTTGGCAAAGTCTTTTCCCAGATTATTTGCAATTTCAAAAAATCAAAATGCAACAGTTCAGGAGAATTGGAATATTTCGACTAATGAATGGAGCTTTG
ATCAAAGAAGACCGCTAAATGAAAGAGAGTTGATTTCCTGGTCTAATCTAAAAAGCTCTTTACCCAAGCCTGACCCTACCAAAGGAAGAAGTTTCCTAGTGTGGAAACCA
AGTGCAACCAAGGAGTTCTCAGTGGCATCAGCAAAACAGGCCCTCAGCAGTCATCAGTCTGATACCAATGGAGCAAATAATCTTTCCCTATTTGATACCATGTGGAGTTC
AAAGATTCCAAAGGAAATCAAATTCTTCCTTTGGACTGTCCTCCATGGAAAATTAAATACTCTTGAAATGCTCCAACAAAAACTTCAAGGAACTTGCTTAAATCTCAAAG
TGAATGCCAGGACCATCTGTTTGTTAATTGCAAACTTGCCACCTCTTTATGGAAAAATCTCCTAG
Protein sequenceShow/hide protein sequence
MKAPWRSIIKNIDWFIRQSSWNINDGEGLSFWHGNWNALSPLAKSFPRLFAISKNQNATVQENWNISTNEWSFDQRRPLNERELISWSNLKSSLPKPDPTKGRSFLVWKP
SATKEFSVASAKQALSSHQSDTNGANNLSLFDTMWSSKIPKEIKFFLWTVLHGKLNTLEMLQQKLQGTCLNLKVNARTICLLIANLPPLYGKIS