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PI0003919 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003919
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr03:7916086..7916637
RNA-Seq ExpressionPI0003919
SyntenyPI0003919
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]1.1e-3656.32Show/hide
Query:  SHLAAKGLLNKTFPYYDDLSY----ERATGARSKTFADVGSNVS---------GDS--MDFPTMYSQGLDMSPDELIGTWSGQSSEGRNASSKSKRKRRG
        SH AAKGLL+K+FPYYDDLSY    + ATGA S+TFAD GSNVS         GDS   D  T+YSQG+ MS DE+ G  +GQ+SE RN SS SKRKR  
Subjt:  SHLAAKGLLNKTFPYYDDLSY----ERATGARSKTFADVGSNVS---------GDS--MDFPTMYSQGLDMSPDELIGTWSGQSSEGRNASSKSKRKRRG

Query:  QMSKTVDSIRNTMEFANDQLKNIADWSKEQYATKDEYGVEIVKQLQDIPELSSHDRVQLMQIIFCSVQYMKGIL
        +  + V+ I +  EF NDQLK I DW KE+ AT+ E   E+VKQLQDIP+L S DR +LMQI+F SV+ ++G L
Subjt:  QMSKTVDSIRNTMEFANDQLKNIADWSKEQYATKDEYGVEIVKQLQDIPELSSHDRVQLMQIIFCSVQYMKGIL

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]1.4e-3654.65Show/hide
Query:  LAAKGLLNKTFPYYDDLSY----ERATGARSKTFADVGSNV----SGD-------SMDFPTMYSQGLDMSPDELIGTWSGQSSEGRNASSKSKRKRRGQM
        LA K LL+K+FPYYDDL Y    +RAT ARS+TFADVGSNV    +GD         D P MYSQG+ MSPDE+ G  +GQ+SE +N SS SKRK+  + 
Subjt:  LAAKGLLNKTFPYYDDLSY----ERATGARSKTFADVGSNV----SGD-------SMDFPTMYSQGLDMSPDELIGTWSGQSSEGRNASSKSKRKRRGQM

Query:  SKTVDSIRNTMEFANDQLKNIADWSKEQYATKDEYGVEIVKQLQDIPELSSHDRVQLMQIIFCSVQYMKGIL
         +TV+ I++ +EF NDQLK IA+W KE+ AT+ E   E++KQLQDIPEL S DR +L+QI+F SV+ ++G L
Subjt:  SKTVDSIRNTMEFANDQLKNIADWSKEQYATKDEYGVEIVKQLQDIPELSSHDRVQLMQIIFCSVQYMKGIL

KAA0042340.1 retrotransposon protein [Cucumis melo var. makuwa]9.6e-3855.75Show/hide
Query:  SHLAAKGLLNKTFPYYDDLSY----ERATGARSKTFADVGSNVS---------GDS--MDFPTMYSQGLDMSPDELIGTWSGQSSEGRNASSKSKRKRRG
        SH   KGLLNK+FPYYDD+SY    ++AT ARS+TFADVGSN+          GDS   D PTMYSQG+ MS DE+ GT +GQ+SE RN SS+SKRK+  
Subjt:  SHLAAKGLLNKTFPYYDDLSY----ERATGARSKTFADVGSNVS---------GDS--MDFPTMYSQGLDMSPDELIGTWSGQSSEGRNASSKSKRKRRG

Query:  QMSKTVDSIRNTMEFANDQLKNIADWSKEQYATKDEYGVEIVKQLQDIPELSSHDRVQLMQIIFCSVQYMKGIL
        Q  +TV+ IR+ M+F NDQLK IADW KE+ A K E    +VKQLQDIP+L + DR +++QI+F SV+ ++G L
Subjt:  QMSKTVDSIRNTMEFANDQLKNIADWSKEQYATKDEYGVEIVKQLQDIPELSSHDRVQLMQIIFCSVQYMKGIL

KAA0063726.1 retrotransposon protein [Cucumis melo var. makuwa]1.3e-2947.19Show/hide
Query:  SHLAAKGLLNKTFPYYDDLSY----ERATGARSKTFADVGSNVSGD----------SMDFPTMYSQGLDMSPDELIGTWSGQSSEGRNASSKSKRKRRGQ
        SH AAKGLLNK+F +YD+LSY    +RATG R ++FA+V SN   +            DFP MYSQGL+MSPD+L+GT + + SE RN SS SKRKR G 
Subjt:  SHLAAKGLLNKTFPYYDDLSY----ERATGARSKTFADVGSNVSGD----------SMDFPTMYSQGLDMSPDELIGTWSGQSSEGRNASSKSKRKRRGQ

Query:  MSKTVDSIRNTMEFANDQLKNIADWSKEQYATKDEYGVEIVKQLQDIPELSSHDRVQLMQIIFCSVQYMKGILEDTPE
         + + D +R  +E+ N+QL  IA+W   Q     +   E+V+QL+ IPEL   DR +LM I+ C+V  MK  L D P+
Subjt:  MSKTVDSIRNTMEFANDQLKNIADWSKEQYATKDEYGVEIVKQLQDIPELSSHDRVQLMQIIFCSVQYMKGILEDTPE

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]4.2e-4158.62Show/hide
Query:  SHLAAKGLLNKTFPYYDDLSY----ERATGARSKTFADVGSNVS---------GDS--MDFPTMYSQGLDMSPDELIGTWSGQSSEGRNASSKSKRKRRG
        SH AAKGLL+K+FPYYDDLSY    +RATGARS+TF +VGSNVS         GDS   D PTMYSQG+ MSPDE+ G  +GQ+SE RN SS SKRKR  
Subjt:  SHLAAKGLLNKTFPYYDDLSY----ERATGARSKTFADVGSNVS---------GDS--MDFPTMYSQGLDMSPDELIGTWSGQSSEGRNASSKSKRKRRG

Query:  QMSKTVDSIRNTMEFANDQLKNIADWSKEQYATKDEYGVEIVKQLQDIPELSSHDRVQLMQIIFCSVQYMKGIL
        +  +TV+ IR+ MEF N+QLK IADW KE+ A + E   ++VKQLQDIP+L S DR +LMQI+F S++ ++G L
Subjt:  QMSKTVDSIRNTMEFANDQLKNIADWSKEQYATKDEYGVEIVKQLQDIPELSSHDRVQLMQIIFCSVQYMKGIL

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859532.0e-4158.62Show/hide
Query:  SHLAAKGLLNKTFPYYDDLSY----ERATGARSKTFADVGSNVS---------GDS--MDFPTMYSQGLDMSPDELIGTWSGQSSEGRNASSKSKRKRRG
        SH AAKGLL+K+FPYYDDLSY    +RATGARS+TF +VGSNVS         GDS   D PTMYSQG+ MSPDE+ G  +GQ+SE RN SS SKRKR  
Subjt:  SHLAAKGLLNKTFPYYDDLSY----ERATGARSKTFADVGSNVS---------GDS--MDFPTMYSQGLDMSPDELIGTWSGQSSEGRNASSKSKRKRRG

Query:  QMSKTVDSIRNTMEFANDQLKNIADWSKEQYATKDEYGVEIVKQLQDIPELSSHDRVQLMQIIFCSVQYMKGIL
        +  +TV+ IR+ MEF N+QLK IADW KE+ A + E   ++VKQLQDIP+L S DR +LMQI+F S++ ++G L
Subjt:  QMSKTVDSIRNTMEFANDQLKNIADWSKEQYATKDEYGVEIVKQLQDIPELSSHDRVQLMQIIFCSVQYMKGIL

A0A5A7SQU2 Putative nuclease HARBI16.7e-3754.65Show/hide
Query:  LAAKGLLNKTFPYYDDLSY----ERATGARSKTFADVGSNV----SGD-------SMDFPTMYSQGLDMSPDELIGTWSGQSSEGRNASSKSKRKRRGQM
        LA K LL+K+FPYYDDL Y    +RAT ARS+TFADVGSNV    +GD         D P MYSQG+ MSPDE+ G  +GQ+SE +N SS SKRK+  + 
Subjt:  LAAKGLLNKTFPYYDDLSY----ERATGARSKTFADVGSNV----SGD-------SMDFPTMYSQGLDMSPDELIGTWSGQSSEGRNASSKSKRKRRGQM

Query:  SKTVDSIRNTMEFANDQLKNIADWSKEQYATKDEYGVEIVKQLQDIPELSSHDRVQLMQIIFCSVQYMKGIL
         +TV+ I++ +EF NDQLK IA+W KE+ AT+ E   E++KQLQDIPEL S DR +L+QI+F SV+ ++G L
Subjt:  SKTVDSIRNTMEFANDQLKNIADWSKEQYATKDEYGVEIVKQLQDIPELSSHDRVQLMQIIFCSVQYMKGIL

A0A5A7U0H7 Retrotransposon protein2.0e-4158.62Show/hide
Query:  SHLAAKGLLNKTFPYYDDLSY----ERATGARSKTFADVGSNVS---------GDS--MDFPTMYSQGLDMSPDELIGTWSGQSSEGRNASSKSKRKRRG
        SH AAKGLL+K+FPYYDDLSY    +RATGARS+TF +VGSNVS         GDS   D PTMYSQG+ MSPDE+ G  +GQ+SE RN SS SKRKR  
Subjt:  SHLAAKGLLNKTFPYYDDLSY----ERATGARSKTFADVGSNVS---------GDS--MDFPTMYSQGLDMSPDELIGTWSGQSSEGRNASSKSKRKRRG

Query:  QMSKTVDSIRNTMEFANDQLKNIADWSKEQYATKDEYGVEIVKQLQDIPELSSHDRVQLMQIIFCSVQYMKGIL
        +  +TV+ IR+ MEF N+QLK IADW KE+ A + E   ++VKQLQDIP+L S DR +LMQI+F S++ ++G L
Subjt:  QMSKTVDSIRNTMEFANDQLKNIADWSKEQYATKDEYGVEIVKQLQDIPELSSHDRVQLMQIIFCSVQYMKGIL

A0A5D3BZU3 Retrotransposon protein5.1e-3756.32Show/hide
Query:  SHLAAKGLLNKTFPYYDDLSY----ERATGARSKTFADVGSNVS---------GDS--MDFPTMYSQGLDMSPDELIGTWSGQSSEGRNASSKSKRKRRG
        SH AAKGLL+K+FPYYDDLSY    + ATGA S+TFAD GSNVS         GDS   D  T+YSQG+ MS DE+ G  +GQ+SE RN SS SKRKR  
Subjt:  SHLAAKGLLNKTFPYYDDLSY----ERATGARSKTFADVGSNVS---------GDS--MDFPTMYSQGLDMSPDELIGTWSGQSSEGRNASSKSKRKRRG

Query:  QMSKTVDSIRNTMEFANDQLKNIADWSKEQYATKDEYGVEIVKQLQDIPELSSHDRVQLMQIIFCSVQYMKGIL
        +  + V+ I +  EF NDQLK I DW KE+ AT+ E   E+VKQLQDIP+L S DR +LMQI+F SV+ ++G L
Subjt:  QMSKTVDSIRNTMEFANDQLKNIADWSKEQYATKDEYGVEIVKQLQDIPELSSHDRVQLMQIIFCSVQYMKGIL

A0A5D3CVB7 Retrotransposon protein4.7e-3855.75Show/hide
Query:  SHLAAKGLLNKTFPYYDDLSY----ERATGARSKTFADVGSNVS---------GDS--MDFPTMYSQGLDMSPDELIGTWSGQSSEGRNASSKSKRKRRG
        SH   KGLLNK+FPYYDD+SY    ++AT ARS+TFADVGSN+          GDS   D PTMYSQG+ MS DE+ GT +GQ+SE RN SS+SKRK+  
Subjt:  SHLAAKGLLNKTFPYYDDLSY----ERATGARSKTFADVGSNVS---------GDS--MDFPTMYSQGLDMSPDELIGTWSGQSSEGRNASSKSKRKRRG

Query:  QMSKTVDSIRNTMEFANDQLKNIADWSKEQYATKDEYGVEIVKQLQDIPELSSHDRVQLMQIIFCSVQYMKGIL
        Q  +TV+ IR+ M+F NDQLK IADW KE+ A K E    +VKQLQDIP+L + DR +++QI+F SV+ ++G L
Subjt:  QMSKTVDSIRNTMEFANDQLKNIADWSKEQYATKDEYGVEIVKQLQDIPELSSHDRVQLMQIIFCSVQYMKGIL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTGCACATAGTCATCTTGCAGCCAAGGGCCTCCTCAATAAAACGTTTCCTTATTATGATGACCTGTCGTATGAAAGGGCTACGGGAGCACGATCGAAGACCTTCGC
TGATGTAGGATCTAATGTGTCAGGGGATTCGATGGATTTTCCAACAATGTATAGTCAGGGATTGGACATGTCACCTGATGAGCTAATAGGCACATGGTCAGGTCAATCCA
GTGAGGGGAGAAATGCTTCGAGCAAAAGCAAGAGAAAACGCAGAGGACAAATGTCTAAAACGGTCGATAGCATTCGCAATACAATGGAATTTGCAAATGACCAGTTGAAG
AACATTGCAGATTGGTCGAAAGAGCAATATGCAACAAAGGACGAATATGGTGTAGAAATCGTGAAACAGTTGCAAGATATCCCTGAACTGAGTAGCCATGATAGGGTGCA
GCTTATGCAGATCATATTCTGTAGTGTGCAATACATGAAAGGCATTCTTGAGGATACCCCTGAAGCTTAA
mRNA sequenceShow/hide mRNA sequence
ATGTTTGCACATAGTCATCTTGCAGCCAAGGGCCTCCTCAATAAAACGTTTCCTTATTATGATGACCTGTCGTATGAAAGGGCTACGGGAGCACGATCGAAGACCTTCGC
TGATGTAGGATCTAATGTGTCAGGGGATTCGATGGATTTTCCAACAATGTATAGTCAGGGATTGGACATGTCACCTGATGAGCTAATAGGCACATGGTCAGGTCAATCCA
GTGAGGGGAGAAATGCTTCGAGCAAAAGCAAGAGAAAACGCAGAGGACAAATGTCTAAAACGGTCGATAGCATTCGCAATACAATGGAATTTGCAAATGACCAGTTGAAG
AACATTGCAGATTGGTCGAAAGAGCAATATGCAACAAAGGACGAATATGGTGTAGAAATCGTGAAACAGTTGCAAGATATCCCTGAACTGAGTAGCCATGATAGGGTGCA
GCTTATGCAGATCATATTCTGTAGTGTGCAATACATGAAAGGCATTCTTGAGGATACCCCTGAAGCTTAAATTGGAGTACTGCACCGAGCTGCTTGAAGAAAAC
Protein sequenceShow/hide protein sequence
MFAHSHLAAKGLLNKTFPYYDDLSYERATGARSKTFADVGSNVSGDSMDFPTMYSQGLDMSPDELIGTWSGQSSEGRNASSKSKRKRRGQMSKTVDSIRNTMEFANDQLK
NIADWSKEQYATKDEYGVEIVKQLQDIPELSSHDRVQLMQIIFCSVQYMKGILEDTPEA