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PI0003928 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003928
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionB3 domain-containing transcription factor VRN1-like
Genome locationchr06:12405405..12409397
RNA-Seq ExpressionPI0003928
SyntenyPI0003928
Gene Ontology termsGO:0005634 - nucleus (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR015300 - DNA-binding pseudobarrel domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8647490.1 hypothetical protein Csa_003352 [Cucumis sativus]2.7e-0966Show/hide
Query:  MVIPNMFIKDYGKILSTSLILMPLPNPDGREWKMGLTKEDKGAVWLQKGW
        ++IP MFIK YGK+LS+S+I   L  PDGREWK+GLT  D GAVWL+KGW
Subjt:  MVIPNMFIKDYGKILSTSLILMPLPNPDGREWKMGLTKEDKGAVWLQKGW
TYK04964.1 B3 domain-containing transcription factor VRN1-like [Cucumis melo var. makuwa]3.5e-0956.92Show/hide
Query:  DGQDVVKVGLVLFIEIVMVIPNMFIKDYGKILSTSLILMPLPNPDGREWKMGLTKEDKGAVWLQK
        + +DVVKV L  FI+ VM+I  MFIKD+GK+LS  +I++ L   +GREWK GLTK D   VWLQK
Subjt:  DGQDVVKVGLVLFIEIVMVIPNMFIKDYGKILSTSLILMPLPNPDGREWKMGLTKEDKGAVWLQK
XP_011657840.1 B3 domain-containing transcription factor VRN1 isoform X1 [Cucumis sativus]2.7e-0966Show/hide
Query:  MVIPNMFIKDYGKILSTSLILMPLPNPDGREWKMGLTKEDKGAVWLQKGW
        ++IP MFIK YGK+LS+S+I   L  PDGREWK+GLT  D GAVWL+KGW
Subjt:  MVIPNMFIKDYGKILSTSLILMPLPNPDGREWKMGLTKEDKGAVWLQKGW
XP_031742404.1 B3 domain-containing transcription factor VRN1 isoform X2 [Cucumis sativus]2.7e-0966Show/hide
Query:  MVIPNMFIKDYGKILSTSLILMPLPNPDGREWKMGLTKEDKGAVWLQKGW
        ++IP MFIK YGK+LS+S+I   L  PDGREWK+GLT  D GAVWL+KGW
Subjt:  MVIPNMFIKDYGKILSTSLILMPLPNPDGREWKMGLTKEDKGAVWLQKGW
XP_031742405.1 B3 domain-containing transcription factor VRN1 isoform X3 [Cucumis sativus]2.7e-0966Show/hide
Query:  MVIPNMFIKDYGKILSTSLILMPLPNPDGREWKMGLTKEDKGAVWLQKGW
        ++IP MFIK YGK+LS+S+I   L  PDGREWK+GLT  D GAVWL+KGW
Subjt:  MVIPNMFIKDYGKILSTSLILMPLPNPDGREWKMGLTKEDKGAVWLQKGW
TrEMBL top hitse value%identityAlignment
A0A0A0KL64 Uncharacterized protein1.3e-0966Show/hide
Query:  MVIPNMFIKDYGKILSTSLILMPLPNPDGREWKMGLTKEDKGAVWLQKGW
        ++IP MFIK YGK+LS+S+I   L  PDGREWK+GLT  D GAVWL+KGW
Subjt:  MVIPNMFIKDYGKILSTSLILMPLPNPDGREWKMGLTKEDKGAVWLQKGW
A0A5D3C119 B3 domain-containing transcription factor VRN1-like1.7e-0956.92Show/hide
Query:  DGQDVVKVGLVLFIEIVMVIPNMFIKDYGKILSTSLILMPLPNPDGREWKMGLTKEDKGAVWLQK
        + +DVVKV L  FI+ VM+I  MFIKD+GK+LS  +I++ L   +GREWK GLTK D   VWLQK
Subjt:  DGQDVVKVGLVLFIEIVMVIPNMFIKDYGKILSTSLILMPLPNPDGREWKMGLTKEDKGAVWLQK
A0A5D3CM75 B3 domain-containing transcription factor VRN1-like isoform X21.5e-0864Show/hide
Query:  MVIPNMFIKDYGKILSTSLILMPLPNPDGREWKMGLTKEDKGAVWLQKGW
        ++IP MFIKDYGK LS  +I   L  PDGREWK+GLT  D G+VWLQ+GW
Subjt:  MVIPNMFIKDYGKILSTSLILMPLPNPDGREWKMGLTKEDKGAVWLQKGW
A0A6J1KN14 B3 domain-containing transcription factor VRN1-like isoform X21.4e-0656Show/hide
Query:  MVIPNMFIKDYGKILSTSLILMPLPNPDGREWKMGLTKEDKGAVWLQKGW
        ++IP  F+KDYG++LSTS   + L  PDG EWK+GLT    G VWLQ GW
Subjt:  MVIPNMFIKDYGKILSTSLILMPLPNPDGREWKMGLTKEDKGAVWLQKGW
A0A6J1KQQ1 B3 domain-containing transcription factor VRN1-like isoform X11.4e-0656Show/hide
Query:  MVIPNMFIKDYGKILSTSLILMPLPNPDGREWKMGLTKEDKGAVWLQKGW
        ++IP  F+KDYG++LSTS   + L  PDG EWK+GLT    G VWLQ GW
Subjt:  MVIPNMFIKDYGKILSTSLILMPLPNPDGREWKMGLTKEDKGAVWLQKGW
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTGCTATTTGGACCAAGAACAACAAGATCCAGAAGGAAAAGGAAAAAGCGTGCAAGATGTTGTGATGGACAAGATGTTGTGAAGGTTGGCCTTGTCCTCTTTATCGA
AATTGTGATGGTGATTCCGAATATGTTTATAAAAGACTATGGTAAGATCTTATCAACTTCCTTAATTCTGATGCCTCTTCCGAATCCAGATGGAAGGGAATGGAAGATGG
GTTTGACAAAGGAAGACAAGGGCGCTGTTTGGCTGCAGAAAGGATGGTGTCTAAGAACACTGGATGGTTGTACCTGGAGACAAATACTTTCCTACCACTGTATCGTGCCA
AGTCCACAAGCAAAGCTACTTCAAGATCGCATGGCTCATCGCAATTTGCCTTCATCGCAAGGCATTGCCTTCCAACTTGAGCCTCGCGAGTACTTCATCTTGCAGAAGTA
TGCATCTTGCCTTGCCGCACAACCATTCATCAACTCGCCATCACTGCATTCAGCTAACTCAACCTCGCAAGCTACATCGCAATCAACCAGCTCGCCTAGCTCAACATCAG
AACGCTTTTAG
mRNA sequenceShow/hide mRNA sequence
ATGCTGCTATTTGGACCAAGAACAACAAGATCCAGAAGGAAAAGGAAAAAGCGTGCAAGATGTTGTGATGGACAAGATGTTGTGAAGGTTGGCCTTGTCCTCTTTATCGA
AATTGTGATGGTGATTCCGAATATGTTTATAAAAGACTATGGTAAGATCTTATCAACTTCCTTAATTCTGATGCCTCTTCCGAATCCAGATGGAAGGGAATGGAAGATGG
GTTTGACAAAGGAAGACAAGGGCGCTGTTTGGCTGCAGAAAGGATGGTGTCTAAGAACACTGGATGGTTGTACCTGGAGACAAATACTTTCCTACCACTGTATCGTGCCA
AGTCCACAAGCAAAGCTACTTCAAGATCGCATGGCTCATCGCAATTTGCCTTCATCGCAAGGCATTGCCTTCCAACTTGAGCCTCGCGAGTACTTCATCTTGCAGAAGTA
TGCATCTTGCCTTGCCGCACAACCATTCATCAACTCGCCATCACTGCATTCAGCTAACTCAACCTCGCAAGCTACATCGCAATCAACCAGCTCGCCTAGCTCAACATCAG
AACGCTTTTAG
Protein sequenceShow/hide protein sequence
MLLFGPRTTRSRRKRKKRARCCDGQDVVKVGLVLFIEIVMVIPNMFIKDYGKILSTSLILMPLPNPDGREWKMGLTKEDKGAVWLQKGWCLRTLDGCTWRQILSYHCIVP
SPQAKLLQDRMAHRNLPSSQGIAFQLEPREYFILQKYASCLAAQPFINSPSLHSANSTSQATSQSTSSPSSTSERF