CuGenDBv2

Gene ID	PI0003938
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Transcription initiation factor IIE subunit beta
Genome location	chr07:4861936..4864911
RNA-Seq Expression	PI0003938
Synteny	PI0003938
Gene Ontology terms	GO:0006367 - transcription initiation from RNA polymerase II promoter (biological process) GO:0006413 - translational initiation (biological process) GO:0005673 - transcription factor TFIIE complex (cellular component) GO:0003677 - DNA binding (molecular function) GO:0003743 - translation initiation factor activity (molecular function)
InterPro domains	IPR003166 - Transcription factor TFIIE beta subunit, DNA-binding domain IPR016656 - Transcription initiation factor TFIIE, beta subunit IPR040501 - TFA2, Winged helix domain 2

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_008452012.1 PREDICTED: general transcription factor IIE subunit 2-like [Cucumis melo]

3.5e-146

99.28

Show/hide

Query:  MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARP APAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
Subjt:  MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAV+DSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

XP_011653191.1 general transcription factor IIE subunit 2 [Cucumis sativus]

3.2e-147

99.28

Show/hide

Query:  MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
Subjt:  MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAV+DSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYL+RKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

XP_022931511.1 general transcription factor IIE subunit 2-like [Cucurbita moschata]

9.3e-139

94.58

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Query:  MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MALQE+LDRFK+QQERCQ+TLSGIAASK+ + +TP+FTPAPAAS  RPPAPA+KFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINE+C
Subjt:  MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ+VASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

XP_022984812.1 general transcription factor IIE subunit 2-like [Cucurbita maxima]

4.2e-139

94.95

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Query:  MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MALQE+LDRFK+QQERCQ+TLSGIAASK+ + +TP+FTPAPAAS  RPPAPA+KFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
Subjt:  MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ+VASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

XP_038906431.1 general transcription factor IIE subunit 2-like [Benincasa hispida]

4.8e-143

97.83

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Query:  MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MALQEQLDRFKKQQERCQ+TLSGIAA+KS SKSTPKFTPAPAAS  RPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
Subjt:  MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPK KKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KWU5 Transcription initiation factor IIE subunit beta

1.5e-147

99.28

Show/hide

Query:  MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
Subjt:  MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAV+DSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYL+RKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

A0A1S3BS95 Transcription initiation factor IIE subunit beta

1.7e-146

99.28

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Query:  MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARP APAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
Subjt:  MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAV+DSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

A0A5A7TNR4 Transcription initiation factor IIE subunit beta

1.7e-146

99.28

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Query:  MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARP APAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
Subjt:  MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAV+DSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

A0A6J1ETU7 Transcription initiation factor IIE subunit beta

4.5e-139

94.58

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Query:  MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MALQE+LDRFK+QQERCQ+TLSGIAASK+ + +TP+FTPAPAAS  RPPAPA+KFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINE+C
Subjt:  MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ+VASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

A0A6J1J372 Transcription initiation factor IIE subunit beta

2.0e-139

94.95

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Query:  MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MALQE+LDRFK+QQERCQ+TLSGIAASK+ + +TP+FTPAPAAS  RPPAPA+KFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
Subjt:  MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
        YVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKD+YPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK
Subjt:  YVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIK

Query:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
        VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ+VASSKPKPKKKKQEISKRTKLTNAHLPELFKN
Subjt:  VDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

SwissProt top hits

e value

%identity

Alignment

P79011 Transcription initiation factor IIE subunit beta

1.4e-12

29.76

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Query:  AQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVFDSLRNNPKVHYDGRR--FSYKSKHDLKDKNQLLYLI--RKFPEGIAVIDLKDAYPSVMEDLQA
        +Q+   ++ L E  +  T E+I  A Y+       + + L+ N +++YD R   F++K  H+++    LL  +  +K   G+++ +L+D +P+V  +L+ 
Subjt:  AQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAVFDSLRNNPKVHYDGRR--FSYKSKHDLKDKNQLLYLI--RKFPEGIAVIDLKDAYPSVMEDLQA

Query:  LKASGQVWLL-SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPAT---NTAKRRANAQHVASSKPKPKKKKQEISKRTKL
        L+  G+V LL +  D    + + ND      VD + +Q++ EI +P   LD+  +L K G+KP +   +T KR  + Q      PK KK K   ++R K+
Subjt:  LKASGQVWLL-SNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPAT---NTAKRRANAQHVASSKPKPKKKKQEISKRTKL

Query:  TNAHL
        TN HL
Subjt:  TNAHL

Q54KJ8 General transcription factor IIE subunit 2

1.1e-14

26.2

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Query:  FKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLL--LETRQAFTPEQINEACYVDINSN
        FK+ Q +   TL+ I    S + S  K+ P  +       A   + S  T        +++ P    +  +++ L  LE   A T E ++   ++ I+  
Subjt:  FKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLL--LETRQAFTPEQINEACYVDINSN

Query:  KAVFDSLRNNPKVHYDGR-RFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLK
          + + LRNN K+   G  RFS+K K +++ +  +L L+  +P GI V +L ++Y +   D++ LK + Q++ +   +S  DI +PND R+++ +  +L 
Subjt:  KAVFDSLRNNPKVHYDGR-RFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLK

Query:  QLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN
         +++ I+LP +  D+EK+++  G+    +  +   +A+   S+K K ++KK    + TK+TN H+     N
Subjt:  QLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

Arabidopsis top hits

e value

%identity

Alignment

AT4G20330.1 Transcription initiation factor TFIIE, beta subunit

6.9e-100

70.36

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Query:  MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAA-SIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEA
        MAL+EQLD+F KQQ +CQSTLS IA+S+  + S+ +  P PAA +  +P A  VKFS+DTERLQ+IN+IRK+PVGAQIKRVIDLL E R A TPEQINE 
Subjt:  MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAA-SIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEA

Query:  CYVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQI
        C+VD+++NKAVFDSLR NPK HYDGRRFSYK+ HD+ DKNQLL L+RK+ +GIAV+DLKDAYP+VMEDL+AL ASG ++LLSN  SQEDIAYPND + +I
Subjt:  CYVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQI

Query:  KVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ-HVASSKPK-PKKKKQEISKRTKLTNAHLPELFKN
        KVDD+ K LFR+I +P DMLDVEK+L K G+KPATNTA+RRA AQ H  S+KPK  KKKKQEISKRTKLTNAHLPELF+N
Subjt:  KVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ-HVASSKPK-PKKKKQEISKRTKLTNAHLPELFKN

AT4G21010.1 Transcription initiation factor TFIIE, beta subunit

1.8e-79

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Query:  MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC
        MAL+EQLD+F KQQE+CQSTLS I++S++    +  + PA A +  +P     KFS +T++LQHI +IR S VGAQ+K VIDLL +TR A+T EQINEAC
Subjt:  MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEAC

Query:  YVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQV-WLLSNFDSQEDIAYPNDPRIQI
        YVD+++NKAVFDSLR NPKVHYDGRRFSYK+ H++KDK QLL  + K  + I V DLKDAYP+VMEDL++LK+SG++ WLLSN DS+E   Y N+     
Subjt:  YVDINSNKAVFDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQV-WLLSNFDSQEDIAYPNDPRIQI

Query:  KVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ-HVASSKPK-PKKKKQEISKRTKLTNAHLPELFKN
        K+DD+LK LFR+I +P DML+VEK+L K G+KPATN A+RRA  Q H  S+KPK  KKKK+EI+ RTKLTN+H+ ELF++
Subjt:  KVDDDLKQLFREIELPRDMLDVEKDLQKNGMKPATNTAKRRANAQ-HVASSKPK-PKKKKQEISKRTKLTNAHLPELFKN

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCGTTGCAAGAGCAATTAGATAGGTTTAAGAAACAGCAAGAAAGATGTCAGAGTACTTTGTCTGGCATTGCTGCATCCAAGTCTGTATCCAAGTCTACACCCAAGTT
TACGCCTGCACCTGCTGCTTCTATTGCAAGACCTCCGGCTCCTGCTGTAAAATTTTCAAATGATACTGAGAGACTTCAACATATTAACAGCATAAGGAAGTCCCCAGTCG
GGGCTCAGATCAAGAGGGTTATTGACCTGCTGCTGGAGACAAGGCAAGCCTTTACACCTGAGCAAATCAACGAAGCATGTTATGTTGATATAAATTCCAACAAGGCTGTC
TTTGATAGTCTGCGGAATAACCCAAAGGTGCACTATGATGGGAGGCGTTTCTCATACAAGTCCAAGCATGACCTGAAGGATAAGAATCAACTTCTTTACTTGATACGAAA
ATTTCCAGAAGGCATTGCTGTCATTGATCTCAAGGATGCTTATCCAAGCGTTATGGAGGACTTGCAAGCCCTAAAAGCCTCAGGTCAGGTTTGGCTTCTCTCAAACTTCG
ATTCACAAGAAGATATTGCCTATCCAAATGACCCACGAATTCAAATCAAGGTAGACGATGATCTGAAGCAGCTCTTTCGGGAGATCGAATTACCTCGTGACATGCTTGAT
GTCGAAAAGGATCTGCAGAAGAATGGGATGAAGCCTGCAACCAACACTGCAAAGAGGCGAGCCAATGCACAACATGTAGCATCCTCAAAACCCAAGCCGAAGAAAAAGAA
GCAAGAAATCAGCAAGAGAACTAAGCTCACTAATGCACATCTTCCCGAGCTCTTCAAAAACTAG

mRNA sequence

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CGAAGAACCTAACCCATTTCTGATTTTAACCTTTCTCAAAGAACTCGTTCCTCAGTTCTCTCTCTTTCTCCCTCGCGCTTTCCCAATTCCAGCTTCTATCTTCATTCTTC
TCGATCTCCATAGCTCCACAAACCGAACTCAATTCAACAATCACCTCCATTACGTACACTACAGATCATTAGACATCGACCAGCAATCTCACCGTCGTCTTATCCACGGC
GGTTGATTCCGGTCTATCTAACCGATGCAATTTCTGGGTTGAGAATTATTGAAACTCTGAGGGGATTTAATGGCGTTGCAAGAGCAATTAGATAGGTTTAAGAAACAGCA
AGAAAGATGTCAGAGTACTTTGTCTGGCATTGCTGCATCCAAGTCTGTATCCAAGTCTACACCCAAGTTTACGCCTGCACCTGCTGCTTCTATTGCAAGACCTCCGGCTC
CTGCTGTAAAATTTTCAAATGATACTGAGAGACTTCAACATATTAACAGCATAAGGAAGTCCCCAGTCGGGGCTCAGATCAAGAGGGTTATTGACCTGCTGCTGGAGACA
AGGCAAGCCTTTACACCTGAGCAAATCAACGAAGCATGTTATGTTGATATAAATTCCAACAAGGCTGTCTTTGATAGTCTGCGGAATAACCCAAAGGTGCACTATGATGG
GAGGCGTTTCTCATACAAGTCCAAGCATGACCTGAAGGATAAGAATCAACTTCTTTACTTGATACGAAAATTTCCAGAAGGCATTGCTGTCATTGATCTCAAGGATGCTT
ATCCAAGCGTTATGGAGGACTTGCAAGCCCTAAAAGCCTCAGGTCAGGTTTGGCTTCTCTCAAACTTCGATTCACAAGAAGATATTGCCTATCCAAATGACCCACGAATT
CAAATCAAGGTAGACGATGATCTGAAGCAGCTCTTTCGGGAGATCGAATTACCTCGTGACATGCTTGATGTCGAAAAGGATCTGCAGAAGAATGGGATGAAGCCTGCAAC
CAACACTGCAAAGAGGCGAGCCAATGCACAACATGTAGCATCCTCAAAACCCAAGCCGAAGAAAAAGAAGCAAGAAATCAGCAAGAGAACTAAGCTCACTAATGCACATC
TTCCCGAGCTCTTCAAAAACTAGAGAACCGTATAGGCTGGCCTGCAACAATATAGTTTGTATGGATAATTCATGGACTCTGTAGATAGGATTCAATCATCCCTTCTGTTT
GGTGTATTTCCTTTTCTTTTCCGTGATCTCATCATAGAATGAAATGCTCCTGTGATTTACTCTTGTGCACGTTTTTGCTTTTACATCAATTAATTGAACAATTTGAAATG
TAAGATATAAGTTCAACTAAACTAGATATATGGTATTAGAAGTTTTATCATATATACCAACTTTGAATTCTATTGTTTCAAATTGGTTTGGTTTTAGAAGAAATTGATAT
GTGCAACATCAC

Protein sequence

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MALQEQLDRFKKQQERCQSTLSGIAASKSVSKSTPKFTPAPAASIARPPAPAVKFSNDTERLQHINSIRKSPVGAQIKRVIDLLLETRQAFTPEQINEACYVDINSNKAV
FDSLRNNPKVHYDGRRFSYKSKHDLKDKNQLLYLIRKFPEGIAVIDLKDAYPSVMEDLQALKASGQVWLLSNFDSQEDIAYPNDPRIQIKVDDDLKQLFREIELPRDMLD
VEKDLQKNGMKPATNTAKRRANAQHVASSKPKPKKKKQEISKRTKLTNAHLPELFKN

PI0003938 (gene) of Melon (PI 482460) v1 genome