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PI0003944 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003944
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr07:18077173..18078593
RNA-Seq ExpressionPI0003944
SyntenyPI0003944
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041264.1 hypothetical protein E6C27_scaffold128G002490 [Cucumis melo var. makuwa]3.4e-2641.76Show/hide
Query:  MSFNAEAINALYDLPNDAETLGQIYVVSPTRRMAREVLEVIAWPGAAWKVTPTGKYQLYPHQLTTEASVWLFFIKK-IFPTRHDSTINLESAMLLYCIMT
        + F  +AINALY L N+   +G +   +P  R  ++ LE I WPG  W   PT KYQL+P+ L TE SVWL FIKK I PTRHDSTI++E  MLLY    
Subjt:  MSFNAEAINALYDLPNDAETLGQIYVVSPTRRMAREVLEVIAWPGAAWKVTPTGKYQLYPHQLTTEASVWLFFIKK-IFPTRHDSTINLESAMLLYCIMT

Query:  KKRVNLGDLIATSILAWMRAPKGTMPFPSTIEGLCVKAVPFLGAINAIPIPGGLCNQMALNRMITFHGHK
          + N  ++    ++AW++ P G  PF    + L +KA P L     + +  G+C    L+R IT H +K
Subjt:  KKRVNLGDLIATSILAWMRAPKGTMPFPSTIEGLCVKAVPFLGAINAIPIPGGLCNQMALNRMITFHGHK

KAA0049609.1 transposase [Cucumis melo var. makuwa]1.0e-3050Show/hide
Query:  FNAEAINALYDLPNDAETL-GQIYVVSPTRRMAREVLEVIAWPGAAWKVTPTGKYQLYPHQLTTEASVWLFFI-KKIFPTRHDSTINLESAMLLYCIMTK
        F  E IN LYDLPND     GQ  +V      A++++++I WP A    TPT + QL+PHQLT EA+VWLFFI KKIFPT HDSTI  E A++LYCI  K
Subjt:  FNAEAINALYDLPNDAETL-GQIYVVSPTRRMAREVLEVIAWPGAAWKVTPTGKYQLYPHQLTTEASVWLFFI-KKIFPTRHDSTINLESAMLLYCIMTK

Query:  KRVNLGDLIATSILAWMRAPKGTMPFPSTIEGLCVKAV-PFLGAINAIPIPGGLCN
        K  NLG ++  + L+WMR PK   PFP+T++ LC+K +      I  I + GG CN
Subjt:  KRVNLGDLIATSILAWMRAPKGTMPFPSTIEGLCVKAV-PFLGAINAIPIPGGLCN

KAA0057652.1 hypothetical protein E6C27_scaffold43054G00260 [Cucumis melo var. makuwa]1.7e-2543.75Show/hide
Query:  KGTPMSFNAEAINALYDLPNDAETLGQIYVVSPTRRMAREVLEVIAWPGAAWKVTPTGKYQLYPHQLTTEASVWLFFIKK-IFPTRHDSTINLESAMLLY
        +G  + F  +AIN L+ L  +A+ +      +P  R   + L+ +AWP   W + PTGKYQL+   L TEA +WL F+K  I PTRHDSTI++E  ML+Y
Subjt:  KGTPMSFNAEAINALYDLPNDAETLGQIYVVSPTRRMAREVLEVIAWPGAAWKVTPTGKYQLYPHQLTTEASVWLFFIKK-IFPTRHDSTINLESAMLLY

Query:  CIMTKKRVNLGDLIATSILAWMRAPKGTMPFPSTIEGLCVKAVP
        CIM    VN+ ++I+  I+AW++ P+ T PF   IE LC+KA P
Subjt:  CIMTKKRVNLGDLIATSILAWMRAPKGTMPFPSTIEGLCVKAVP

KAA0062900.1 gag/pol protein [Cucumis melo var. makuwa]2.6e-3455.32Show/hide
Query:  FNAEAINALYDLPNDAETLGQIYVVSPTRRMAREVLEVIAWPGAAWKVTPTG-KYQLYPHQLTTEASVWLFFIK-KIFPTRHDSTINLESAMLLYCIMTK
        FN E IN LY+ PNDAE LGQ  V   T+ +A+E L+V+AWPG   +V P   +YQLYPH LTT+A+VW+FF K KIFPT +DSTI+++  ++LYCIM K
Subjt:  FNAEAINALYDLPNDAETLGQIYVVSPTRRMAREVLEVIAWPGAAWKVTPTG-KYQLYPHQLTTEASVWLFFIK-KIFPTRHDSTINLESAMLLYCIMTK

Query:  KRVNLGDLIATSILAWMRAPKGTMPFPSTIEGLCVKAVPFL
        K +NL ++I  +IL WM  PK  MPFPS +E LC+K +P L
Subjt:  KRVNLGDLIATSILAWMRAPKGTMPFPSTIEGLCVKAVPFL

TYK15967.1 hypothetical protein E5676_scaffold94G00870 [Cucumis melo var. makuwa]1.0e-3050Show/hide
Query:  FNAEAINALYDLPNDAETL-GQIYVVSPTRRMAREVLEVIAWPGAAWKVTPTGKYQLYPHQLTTEASVWLFFI-KKIFPTRHDSTINLESAMLLYCIMTK
        F  E IN LYDLPND     GQ  +V      A++++++I WP A    TPT + QL+PHQLT EA+VWLFFI KKIFPT HDSTI  E A++LYCI  K
Subjt:  FNAEAINALYDLPNDAETL-GQIYVVSPTRRMAREVLEVIAWPGAAWKVTPTGKYQLYPHQLTTEASVWLFFI-KKIFPTRHDSTINLESAMLLYCIMTK

Query:  KRVNLGDLIATSILAWMRAPKGTMPFPSTIEGLCVKAV-PFLGAINAIPIPGGLCN
        K  NLG ++  + L+WMR PK   PFP+T++ LC+K +      I  I + GG CN
Subjt:  KRVNLGDLIATSILAWMRAPKGTMPFPSTIEGLCVKAV-PFLGAINAIPIPGGLCN

TrEMBL top hitse value%identityAlignment
A0A5A7U806 Transposase5.0e-3150Show/hide
Query:  FNAEAINALYDLPNDAETL-GQIYVVSPTRRMAREVLEVIAWPGAAWKVTPTGKYQLYPHQLTTEASVWLFFI-KKIFPTRHDSTINLESAMLLYCIMTK
        F  E IN LYDLPND     GQ  +V      A++++++I WP A    TPT + QL+PHQLT EA+VWLFFI KKIFPT HDSTI  E A++LYCI  K
Subjt:  FNAEAINALYDLPNDAETL-GQIYVVSPTRRMAREVLEVIAWPGAAWKVTPTGKYQLYPHQLTTEASVWLFFI-KKIFPTRHDSTINLESAMLLYCIMTK

Query:  KRVNLGDLIATSILAWMRAPKGTMPFPSTIEGLCVKAV-PFLGAINAIPIPGGLCN
        K  NLG ++  + L+WMR PK   PFP+T++ LC+K +      I  I + GG CN
Subjt:  KRVNLGDLIATSILAWMRAPKGTMPFPSTIEGLCVKAV-PFLGAINAIPIPGGLCN

A0A5A7V6M5 Gag/pol protein1.3e-3455.32Show/hide
Query:  FNAEAINALYDLPNDAETLGQIYVVSPTRRMAREVLEVIAWPGAAWKVTPTG-KYQLYPHQLTTEASVWLFFIK-KIFPTRHDSTINLESAMLLYCIMTK
        FN E IN LY+ PNDAE LGQ  V   T+ +A+E L+V+AWPG   +V P   +YQLYPH LTT+A+VW+FF K KIFPT +DSTI+++  ++LYCIM K
Subjt:  FNAEAINALYDLPNDAETLGQIYVVSPTRRMAREVLEVIAWPGAAWKVTPTG-KYQLYPHQLTTEASVWLFFIK-KIFPTRHDSTINLESAMLLYCIMTK

Query:  KRVNLGDLIATSILAWMRAPKGTMPFPSTIEGLCVKAVPFL
        K +NL ++I  +IL WM  PK  MPFPS +E LC+K +P L
Subjt:  KRVNLGDLIATSILAWMRAPKGTMPFPSTIEGLCVKAVPFL

A0A5D3CVL7 Uncharacterized protein5.0e-3150Show/hide
Query:  FNAEAINALYDLPNDAETL-GQIYVVSPTRRMAREVLEVIAWPGAAWKVTPTGKYQLYPHQLTTEASVWLFFI-KKIFPTRHDSTINLESAMLLYCIMTK
        F  E IN LYDLPND     GQ  +V      A++++++I WP A    TPT + QL+PHQLT EA+VWLFFI KKIFPT HDSTI  E A++LYCI  K
Subjt:  FNAEAINALYDLPNDAETL-GQIYVVSPTRRMAREVLEVIAWPGAAWKVTPTGKYQLYPHQLTTEASVWLFFI-KKIFPTRHDSTINLESAMLLYCIMTK

Query:  KRVNLGDLIATSILAWMRAPKGTMPFPSTIEGLCVKAV-PFLGAINAIPIPGGLCN
        K  NLG ++  + L+WMR PK   PFP+T++ LC+K +      I  I + GG CN
Subjt:  KRVNLGDLIATSILAWMRAPKGTMPFPSTIEGLCVKAV-PFLGAINAIPIPGGLCN

A0A5D3CW17 Uncharacterized protein1.7e-2641.76Show/hide
Query:  MSFNAEAINALYDLPNDAETLGQIYVVSPTRRMAREVLEVIAWPGAAWKVTPTGKYQLYPHQLTTEASVWLFFIKK-IFPTRHDSTINLESAMLLYCIMT
        + F  +AINALY L N+   +G +   +P  R  ++ LE I WPG  W   PT KYQL+P+ L TE SVWL FIKK I PTRHDSTI++E  MLLY    
Subjt:  MSFNAEAINALYDLPNDAETLGQIYVVSPTRRMAREVLEVIAWPGAAWKVTPTGKYQLYPHQLTTEASVWLFFIKK-IFPTRHDSTINLESAMLLYCIMT

Query:  KKRVNLGDLIATSILAWMRAPKGTMPFPSTIEGLCVKAVPFLGAINAIPIPGGLCNQMALNRMITFHGHK
          + N  ++    ++AW++ P G  PF    + L +KA P L     + +  G+C    L+R IT H +K
Subjt:  KKRVNLGDLIATSILAWMRAPKGTMPFPSTIEGLCVKAVPFLGAINAIPIPGGLCNQMALNRMITFHGHK

A0A5D3D7L3 Uncharacterized protein8.2e-2643.75Show/hide
Query:  KGTPMSFNAEAINALYDLPNDAETLGQIYVVSPTRRMAREVLEVIAWPGAAWKVTPTGKYQLYPHQLTTEASVWLFFIKK-IFPTRHDSTINLESAMLLY
        +G  + F  +AIN L+ L  +A+ +      +P  R   + L+ +AWP   W + PTGKYQL+   L TEA +WL F+K  I PTRHDSTI++E  ML+Y
Subjt:  KGTPMSFNAEAINALYDLPNDAETLGQIYVVSPTRRMAREVLEVIAWPGAAWKVTPTGKYQLYPHQLTTEASVWLFFIKK-IFPTRHDSTINLESAMLLY

Query:  CIMTKKRVNLGDLIATSILAWMRAPKGTMPFPSTIEGLCVKAVP
        CIM    VN+ ++I+  I+AW++ P+ T PF   IE LC+KA P
Subjt:  CIMTKKRVNLGDLIATSILAWMRAPKGTMPFPSTIEGLCVKAVP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGTGGAGGTTGACAATTTTGACCAGGAGGTTGTGCTCGATTTTCTCAACGAGCGGATGAAAAAGCGGAAAGACGCCCACATCAAGAGGTTAAAGGAAGCTCGTTG
TAGGAAGGACGAGCGTGAGCGAATGAGATTCGAGAAAATTAGAAAGGCGAAGAGCACATTAGAAATACGCTCCCCGCCTAACGAGGTTGCAGAGCTACACAAGAAGATAT
CTGACAAGCTCGCACAAGTCTCGTTCGCCAAAACAAGGAAAACAATAGAGGCGGTGAAGACTGCCTCAAAAAGGAAGGAAGAAAAGAAAAAGATGCTCGCAGACTTGAGC
GAGCAAGTGACGGAGCTCCCCGCGAAGATGAAAGCACTAGAGCCTGAGAGGAACCTCGAGGTGATCGCAGAAGAACTCGAGGATGAGCTGAAGGCGATGAGCCCACTTGA
TGAATGGCCACCGCCAAGAAAACCAAGGGAGGTCGCCGGACCATCTAGAGGAAAGAAGAAAACTGGCGTTCTGGACCTGAAGAGCGCCCACCAAGCGGCGAAACCATTAG
CAAAAGACCCTCAATCAACTCCCTCATCAAGGTTGAGAAATGGTTGTTTCCGTTTAATGGTCAACTCCCCGACTTCCTCTACGCACCCATCCAGGCGTTCGGGTGGAAGC
AGTTCTTCAAAGGGCACACCAATGAGCTTCAACGCGGAGGCCATCAACGCATTATATGATTTGCCCAATGATGCTGAAACGCTTGGGCAGATATACGTAGTTAGCCCTAC
GAGAAGGATGGCCCGTGAAGTGTTGGAGGTCATCGCATGGCCTGGGGCCGCATGGAAAGTGACACCAACGGGGAAGTATCAACTGTATCCACATCAGCTAACCACAGAGG
CGAGCGTGTGGCTATTTTTCATCAAAAAGATCTTCCCAACGCGCCATGATAGCACCATTAACTTAGAGTCAGCGATGCTACTCTACTGTATAATGACGAAGAAGCGCGTC
AACCTTGGCGATCTAATAGCCACATCCATTCTGGCTTGGATGCGAGCTCCCAAAGGCACCATGCCCTTCCCATCCACCATTGAAGGCCTCTGCGTTAAGGCTGTGCCATT
CCTAGGCGCCATCAATGCAATTCCAATCCCAGGCGGGCTGTGCAACCAAATGGCTTTGAACCGCATGATCACTTTCCATGGTCATAAAGAAATGGAAAAGCGAGCAAAGA
CTTTGGGCGAGACACCTGAAGGCATGGCCCAAGCAGAACGCAAAAGGAAGTCCCCAGCCGCCGCATCAATCCCCCCACCTAAAGTAAAAAACCAAGGGTTGATGTGGCGA
AGCAGCCACCACCACTGA
mRNA sequenceShow/hide mRNA sequence
ATGGAGGTGGAGGTTGACAATTTTGACCAGGAGGTTGTGCTCGATTTTCTCAACGAGCGGATGAAAAAGCGGAAAGACGCCCACATCAAGAGGTTAAAGGAAGCTCGTTG
TAGGAAGGACGAGCGTGAGCGAATGAGATTCGAGAAAATTAGAAAGGCGAAGAGCACATTAGAAATACGCTCCCCGCCTAACGAGGTTGCAGAGCTACACAAGAAGATAT
CTGACAAGCTCGCACAAGTCTCGTTCGCCAAAACAAGGAAAACAATAGAGGCGGTGAAGACTGCCTCAAAAAGGAAGGAAGAAAAGAAAAAGATGCTCGCAGACTTGAGC
GAGCAAGTGACGGAGCTCCCCGCGAAGATGAAAGCACTAGAGCCTGAGAGGAACCTCGAGGTGATCGCAGAAGAACTCGAGGATGAGCTGAAGGCGATGAGCCCACTTGA
TGAATGGCCACCGCCAAGAAAACCAAGGGAGGTCGCCGGACCATCTAGAGGAAAGAAGAAAACTGGCGTTCTGGACCTGAAGAGCGCCCACCAAGCGGCGAAACCATTAG
CAAAAGACCCTCAATCAACTCCCTCATCAAGGTTGAGAAATGGTTGTTTCCGTTTAATGGTCAACTCCCCGACTTCCTCTACGCACCCATCCAGGCGTTCGGGTGGAAGC
AGTTCTTCAAAGGGCACACCAATGAGCTTCAACGCGGAGGCCATCAACGCATTATATGATTTGCCCAATGATGCTGAAACGCTTGGGCAGATATACGTAGTTAGCCCTAC
GAGAAGGATGGCCCGTGAAGTGTTGGAGGTCATCGCATGGCCTGGGGCCGCATGGAAAGTGACACCAACGGGGAAGTATCAACTGTATCCACATCAGCTAACCACAGAGG
CGAGCGTGTGGCTATTTTTCATCAAAAAGATCTTCCCAACGCGCCATGATAGCACCATTAACTTAGAGTCAGCGATGCTACTCTACTGTATAATGACGAAGAAGCGCGTC
AACCTTGGCGATCTAATAGCCACATCCATTCTGGCTTGGATGCGAGCTCCCAAAGGCACCATGCCCTTCCCATCCACCATTGAAGGCCTCTGCGTTAAGGCTGTGCCATT
CCTAGGCGCCATCAATGCAATTCCAATCCCAGGCGGGCTGTGCAACCAAATGGCTTTGAACCGCATGATCACTTTCCATGGTCATAAAGAAATGGAAAAGCGAGCAAAGA
CTTTGGGCGAGACACCTGAAGGCATGGCCCAAGCAGAACGCAAAAGGAAGTCCCCAGCCGCCGCATCAATCCCCCCACCTAAAGTAAAAAACCAAGGGTTGATGTGGCGA
AGCAGCCACCACCACTGA
Protein sequenceShow/hide protein sequence
MEVEVDNFDQEVVLDFLNERMKKRKDAHIKRLKEARCRKDERERMRFEKIRKAKSTLEIRSPPNEVAELHKKISDKLAQVSFAKTRKTIEAVKTASKRKEEKKKMLADLS
EQVTELPAKMKALEPERNLEVIAEELEDELKAMSPLDEWPPPRKPREVAGPSRGKKKTGVLDLKSAHQAAKPLAKDPQSTPSSRLRNGCFRLMVNSPTSSTHPSRRSGGS
SSSKGTPMSFNAEAINALYDLPNDAETLGQIYVVSPTRRMAREVLEVIAWPGAAWKVTPTGKYQLYPHQLTTEASVWLFFIKKIFPTRHDSTINLESAMLLYCIMTKKRV
NLGDLIATSILAWMRAPKGTMPFPSTIEGLCVKAVPFLGAINAIPIPGGLCNQMALNRMITFHGHKEMEKRAKTLGETPEGMAQAERKRKSPAAASIPPPKVKNQGLMWR
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