; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0003950 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003950
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionSOSS complex subunit B-like protein
Genome locationchr02:747118..749016
RNA-Seq ExpressionPI0003950
SyntenyPI0003950
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0010212 - response to ionizing radiation (biological process)
GO:0070876 - SOSS complex (cellular component)
GO:0003677 - DNA binding (molecular function)
InterPro domainsIPR012340 - Nucleic acid-binding, OB-fold


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004135609.1 SOSS complex subunit B homolog [Cucumis sativus]2.2e-7299.28Show/hide
Query:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNK CQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
Subjt:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
        FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
Subjt:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR

XP_008450623.1 PREDICTED: SOSS complex subunit B homolog [Cucumis melo]2.2e-7299.28Show/hide
Query:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNK CQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
Subjt:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
        FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
Subjt:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR

XP_022961520.1 SOSS complex subunit B homolog [Cucurbita moschata]9.6e-6893.53Show/hide
Query:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        MMI LKDLVPAAQN VNTQFIVLEKGMTTMEGQNK CQSLVADETAAVHFQLWG+ECDVVEPSDI+RLTNGIFSYSRN+NLVLRAGKRGKIEKVGEF MV
Subjt:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
        FVETPNMSEIHWVPDT NS KYVKESVLSPYSRIFPPIR
Subjt:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR

XP_023515959.1 SOSS complex subunit B homolog [Cucurbita pepo subsp. pepo]2.1e-6792.09Show/hide
Query:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        MMI LKDLVPAAQN VNTQFIVL+KGMTT+EGQNK CQSLVADETAAVHFQLWG+ECDVVEPSDI+RLTNGIFSYSRNNNLVLRAGKRGK+EKVGEF MV
Subjt:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
        FVETPNMSEIHWVPDT NS KYVKESVLSPYSRIFPPIR
Subjt:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR

XP_038878334.1 SOSS complex subunit B homolog [Benincasa hispida]4.6e-7097.12Show/hide
Query:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        MMI LKDLVPAAQN VNTQFIVLEKGMT MEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
Subjt:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
        FVETPNMSEIHWVPDT NSNKYVKESVLSPYSRIFPPIR
Subjt:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR

TrEMBL top hitse value%identityAlignment
A0A0A0LW03 Uncharacterized protein1.1e-7299.28Show/hide
Query:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNK CQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
Subjt:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
        FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
Subjt:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR

A0A1S3BPN4 SOSS complex subunit B homolog1.1e-7299.28Show/hide
Query:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNK CQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
Subjt:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
        FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
Subjt:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR

A0A5D3CIR3 SOSS complex subunit B-like protein1.1e-7299.28Show/hide
Query:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNK CQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
Subjt:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
        FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
Subjt:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR

A0A6J1HAL0 SOSS complex subunit B homolog4.6e-6893.53Show/hide
Query:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        MMI LKDLVPAAQN VNTQFIVLEKGMTTMEGQNK CQSLVADETAAVHFQLWG+ECDVVEPSDI+RLTNGIFSYSRN+NLVLRAGKRGKIEKVGEF MV
Subjt:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
        FVETPNMSEIHWVPDT NS KYVKESVLSPYSRIFPPIR
Subjt:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR

A0A6J1HZ66 SOSS complex subunit B homolog3.9e-6792.09Show/hide
Query:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        MMI LKDLVPAAQN VNTQFIVLEKGMTTM+GQNK CQSLVADETAAVHFQLWG+ECDVVEPSDI+RL NGIFSYSRNNNLVLRAGKRGKIEKVGEF MV
Subjt:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR
        FVETPNMSEIHWVPDT NS KYVKESV+SPYSRIFPPIR
Subjt:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPIR

SwissProt top hitse value%identityAlignment
A6QLK2 SOSS complex subunit B19.1e-1339.62Show/hide
Query:  LKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSL-VADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVE
        +KD+ P  +N +N  FIVLE G  T        ++  VAD+T +++  +W D  ++++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E
Subjt:  LKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSL-VADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVE

Query:  TPNMSE
         PN SE
Subjt:  TPNMSE

Q3SWT1 SOSS complex subunit B12.4e-1337.23Show/hide
Query:  LKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSL-VADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVE
        +KD+ P  +N +N  FIVLE G  T        ++  VAD+T +++  +W D  ++++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E
Subjt:  LKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSL-VADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVE

Query:  TPNMSEIHWVPDTIN-SNKYVK--ESVLSPYSRIFPP
         PN SE +   +T   SNK V+   S  +P +   PP
Subjt:  TPNMSEIHWVPDTIN-SNKYVK--ESVLSPYSRIFPP

Q54X41 SOSS complex subunit B homolog8.3e-1439.64Show/hide
Query:  MIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVF
        +I + ++ P ++N +N  FIVL+KG  T + +    Q LVAD TA+++  +W    + ++P DI+RL  G +S      L L  GK G IEK+GEF   F
Subjt:  MIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVF

Query:  VETPNMSEIHW
        VE PN+S   W
Subjt:  VETPNMSEIHW

Q8R2Y9 SOSS complex subunit B14.1e-1337.5Show/hide
Query:  LKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSL-VADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVE
        +KD+ P  +N +N  FIVLE G  T        ++  VAD+T +++  +W D  ++++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E
Subjt:  LKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSL-VADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVE

Query:  TPNMSEIHWVPDTINS-NKYVKESVLSP
         PN SE +   +T  + NK V+ +  SP
Subjt:  TPNMSEIHWVPDTINS-NKYVKESVLSP

Q9BQ15 SOSS complex subunit B19.1e-1339.62Show/hide
Query:  LKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSL-VADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVE
        +KD+ P  +N +N  FIVLE G  T        ++  VAD+T +++  +W D  ++++P DIIRLT G  S  +   L L  G+ G ++K+GEF MV+ E
Subjt:  LKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSL-VADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVE

Query:  TPNMSE
         PN SE
Subjt:  TPNMSE

Arabidopsis top hitse value%identityAlignment
AT5G63690.1 Nucleic acid-binding, OB-fold-like protein4.5e-4760.14Show/hide
Query:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV
        M + LKD+VPAAQN ++T+FI+L+K  ++       C +L ADETAAVH QLWGDECD  E  DI++LTNGIFSY RN+ L+LRAGKRGK+EK+GEF + 
Subjt:  MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMV

Query:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPI
        FVETPN+SEI W+PD  N  +Y++  V+S YSRIFPP+
Subjt:  FVETPNMSEIHWVPDTINSNKYVKESVLSPYSRIFPPI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGATACCTCTCAAGGATTTGGTGCCAGCAGCCCAGAACAAAGTGAATACACAGTTCATAGTTTTGGAGAAAGGCATGACAACAATGGAAGGACAAAACAAGGCATG
CCAATCACTGGTGGCTGACGAGACAGCAGCGGTTCACTTCCAGCTATGGGGAGATGAGTGTGATGTCGTTGAGCCAAGCGACATTATACGGTTAACGAATGGGATATTTT
CATACAGTCGAAACAATAATCTGGTTCTGAGGGCAGGGAAGAGAGGGAAGATTGAGAAGGTAGGAGAGTTCAAGATGGTGTTTGTAGAGACACCAAATATGAGTGAGATC
CATTGGGTTCCAGACACCATTAACTCCAACAAGTATGTGAAAGAATCTGTTTTATCTCCTTACTCTCGCATCTTTCCTCCCATTCGTTGA
mRNA sequenceShow/hide mRNA sequence
GCCTTATTTTTGGTAACTGTAGAAGTTTAAACCTCTAATTATCTTCTCCGTCGGATTTGAGCTTCAGTTGGTATAAATCTCTCTCAATTTTTACATTTATCCTCTTTGAG
CAAGCGGATAAATGATGATACCTCTCAAGGATTTGGTGCCAGCAGCCCAGAACAAAGTGAATACACAGTTCATAGTTTTGGAGAAAGGCATGACAACAATGGAAGGACAA
AACAAGGCATGCCAATCACTGGTGGCTGACGAGACAGCAGCGGTTCACTTCCAGCTATGGGGAGATGAGTGTGATGTCGTTGAGCCAAGCGACATTATACGGTTAACGAA
TGGGATATTTTCATACAGTCGAAACAATAATCTGGTTCTGAGGGCAGGGAAGAGAGGGAAGATTGAGAAGGTAGGAGAGTTCAAGATGGTGTTTGTAGAGACACCAAATA
TGAGTGAGATCCATTGGGTTCCAGACACCATTAACTCCAACAAGTATGTGAAAGAATCTGTTTTATCTCCTTACTCTCGCATCTTTCCTCCCATTCGTTGATAGTCTTAT
GGTGGTTGTAGACCAAATTTGAGAAAGAAAGGTCAAGGAAAGAGTAAATTTTGAAGATGCATTTCGCATTATGCTACACACATCTTAAATGAAAATGCACATGACACTAT
ACTTACCTTTAGTCGTTGAGTCAGATGCTGCGGAAGTTATCAAGTTATCAATATTCAAACTGGTTCTTTGGAATATCAAAGTAATTTGCTCACTGTCATCACCGATGTAT
GATGTAA
Protein sequenceShow/hide protein sequence
MMIPLKDLVPAAQNKVNTQFIVLEKGMTTMEGQNKACQSLVADETAAVHFQLWGDECDVVEPSDIIRLTNGIFSYSRNNNLVLRAGKRGKIEKVGEFKMVFVETPNMSEI
HWVPDTINSNKYVKESVLSPYSRIFPPIR