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PI0003952 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003952
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTransposon Ty3-I Gag-Pol polyprotein
Genome locationchr08:5780815..5785957
RNA-Seq ExpressionPI0003952
SyntenyPI0003952
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025749.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]6.0e-1385.71Show/hide
Query:  MSKDCVNKKVMVIRNWIIDSKDECDEHDAQPEEESNAHDDEYIEGGKTM
        MSKDCVNKKVMVIRN IIDSKDECDEHDA  EEES+AHDDEYIEGG ++
Subjt:  MSKDCVNKKVMVIRNWIIDSKDECDEHDAQPEEESNAHDDEYIEGGKTM

KGN53753.1 hypothetical protein Csa_014547 [Cucumis sativus]5.6e-1188.64Show/hide
Query:  MSKDCVNKKVMVIRNWIIDSKDECDEHDAQPEEESNAHDDEYIE
        MSKD VNKKVMVIRNWIIDSK+ECDEHDA  EEES+AHDDEYIE
Subjt:  MSKDCVNKKVMVIRNWIIDSKDECDEHDAQPEEESNAHDDEYIE

TYK06180.1 Transposon Ty3-I Gag-Pol polyprotein [Cucumis melo var. makuwa]8.7e-1283.67Show/hide
Query:  MSKDCVNKKVMVIRNWIIDSKDECDEHDAQPEEESNAHDDEYIEGGKTM
        MSKDCVNKKVMVIRN IIDSKDE DEHDA  EEES+AHDDEYIEGG ++
Subjt:  MSKDCVNKKVMVIRNWIIDSKDECDEHDAQPEEESNAHDDEYIEGGKTM

XP_023520950.1 uncharacterized protein LOC111784506, partial [Cucurbita pepo subsp. pepo]7.6e-0864.15Show/hide
Query:  MSKDCVNKKVMVIRNWIIDSKDECDEHDAQPEEESNAHDDEYIEGGKTMKPKR
        MSK+CVNKKVMVIRN I+DS DEC++HD+Q  EE  A+DDEY+E  KT + K+
Subjt:  MSKDCVNKKVMVIRNWIIDSKDECDEHDAQPEEESNAHDDEYIEGGKTMKPKR

XP_038896445.1 LOW QUALITY PROTEIN: uncharacterized protein LOC120084703 [Benincasa hispida]1.7e-0776.09Show/hide
Query:  MSKDCVNKKVMVIRNWIIDSKDECDEHDAQPEEESNAHDDEYIEGG
        MSKDCVNKKV+VIRN IIDS+DECDE     EEES A DDEYIE G
Subjt:  MSKDCVNKKVMVIRNWIIDSKDECDEHDAQPEEESNAHDDEYIEGG

TrEMBL top hitse value%identityAlignment
A0A0A0KW07 Uncharacterized protein2.7e-1188.64Show/hide
Query:  MSKDCVNKKVMVIRNWIIDSKDECDEHDAQPEEESNAHDDEYIE
        MSKD VNKKVMVIRNWIIDSK+ECDEHDA  EEES+AHDDEYIE
Subjt:  MSKDCVNKKVMVIRNWIIDSKDECDEHDAQPEEESNAHDDEYIE

A0A5A7SKE7 Transposon Ty3-I Gag-Pol polyprotein2.9e-1385.71Show/hide
Query:  MSKDCVNKKVMVIRNWIIDSKDECDEHDAQPEEESNAHDDEYIEGGKTM
        MSKDCVNKKVMVIRN IIDSKDECDEHDA  EEES+AHDDEYIEGG ++
Subjt:  MSKDCVNKKVMVIRNWIIDSKDECDEHDAQPEEESNAHDDEYIEGGKTM

A0A5A7SRG3 Transposon Ty3-I Gag-Pol polyprotein3.1e-0766Show/hide
Query:  MSKDCVNKKVMVIRNWIIDSKDECDEHDAQPEEE-SNAHDDEYIEGGKTM
        MSKDC+NK+VMV+RN +IDSKDEC+E+DAQ EEE     DDEYIE G ++
Subjt:  MSKDCVNKKVMVIRNWIIDSKDECDEHDAQPEEE-SNAHDDEYIEGGKTM

A0A5D3C4C3 Transposon Ty3-I Gag-Pol polyprotein4.2e-1283.67Show/hide
Query:  MSKDCVNKKVMVIRNWIIDSKDECDEHDAQPEEESNAHDDEYIEGGKTM
        MSKDCVNKKVMVIRN IIDSKDE DEHDA  EEES+AHDDEYIEGG ++
Subjt:  MSKDCVNKKVMVIRNWIIDSKDECDEHDAQPEEESNAHDDEYIEGGKTM

A0A5D3CCP8 CCHC-type domain-containing protein9.1e-0764Show/hide
Query:  MSKDCVNKKVMVIRNWIIDSKDECDEHDAQPEEE-SNAHDDEYIEGGKTM
        MSKDC+NK+VMV+RN +IDS+DEC+E+DAQ EEE     DDEYIE G ++
Subjt:  MSKDCVNKKVMVIRNWIIDSKDECDEHDAQPEEE-SNAHDDEYIEGGKTM

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCAAAGATTGTGTTAATAAAAAGGTCATGGTGATAAGAAATTGGATAATTGATTCGAAAGACGAATGTGATGAGCATGATGCACAACCTGAGGAAGAATCTAATGC
ACATGACGATGAGTACATTGAAGGAGGTAAAACAATGAAGCCAAAACGCGAGGGGGCCAAGAGCCAAGTGCCAAAAAGTACCAAGTGTTCAAGTGTGCCAAAAGAGCCAA
CTGCCAACTGCCAAAAGTCCCAAGTGTGCCAAGAGCTAAGCGCCAAGTGTGTCAAAAGAGCCAAGAATGTCAAGTGCCAAGTGTGCCAAGAGCTAAGCGCCAAGTGTGCC
AAAAGAGCCAAGAATGTCAAGTGTCGAAAGTGTCAAGTGTGCCAAGAGAGCCAAGAGCAAAATGCCAAAAGGTGTCAAGTGTGCCAAGAAAGTCAAGAAAGTCAAATGTC
AAAGTGCCAAGAGAGCCAAGAACAATGGGCCAAGAGTGCCAAGAGCAAAGTCCCAAGTGTGTCAAGAGTTAAAAGCCAAGTGTGCCAAGAGCTAAGAGTTAAGTGTGCCA
AGAGAGCCAAGAATGATAAAAGTGTCAAGTGCGCCAAGAATGATAAAAGTGCCAAGTGCGCCAAGAAAGCCAAGAAAGCCAACTGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCAAAGATTGTGTTAATAAAAAGGTCATGGTGATAAGAAATTGGATAATTGATTCGAAAGACGAATGTGATGAGCATGATGCACAACCTGAGGAAGAATCTAATGC
ACATGACGATGAGTACATTGAAGGAGGTAAAACAATGAAGCCAAAACGCGAGGGGGCCAAGAGCCAAGTGCCAAAAAGTACCAAGTGTTCAAGTGTGCCAAAAGAGCCAA
CTGCCAACTGCCAAAAGTCCCAAGTGTGCCAAGAGCTAAGCGCCAAGTGTGTCAAAAGAGCCAAGAATGTCAAGTGCCAAGTGTGCCAAGAGCTAAGCGCCAAGTGTGCC
AAAAGAGCCAAGAATGTCAAGTGTCGAAAGTGTCAAGTGTGCCAAGAGAGCCAAGAGCAAAATGCCAAAAGGTGTCAAGTGTGCCAAGAAAGTCAAGAAAGTCAAATGTC
AAAGTGCCAAGAGAGCCAAGAACAATGGGCCAAGAGTGCCAAGAGCAAAGTCCCAAGTGTGTCAAGAGTTAAAAGCCAAGTGTGCCAAGAGCTAAGAGTTAAGTGTGCCA
AGAGAGCCAAGAATGATAAAAGTGTCAAGTGCGCCAAGAATGATAAAAGTGCCAAGTGCGCCAAGAAAGCCAAGAAAGCCAACTGTTGA
Protein sequenceShow/hide protein sequence
MSKDCVNKKVMVIRNWIIDSKDECDEHDAQPEEESNAHDDEYIEGGKTMKPKREGAKSQVPKSTKCSSVPKEPTANCQKSQVCQELSAKCVKRAKNVKCQVCQELSAKCA
KRAKNVKCRKCQVCQESQEQNAKRCQVCQESQESQMSKCQESQEQWAKSAKSKVPSVSRVKSQVCQELRVKCAKRAKNDKSVKCAKNDKSAKCAKKAKKANC