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PI0003975 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0003975
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr10:3863134..3865555
RNA-Seq ExpressionPI0003975
SyntenyPI0003975
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.6e-3069.61Show/hide
Query:  PNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKIMETPSSEEKASMDDLNE
        PNLRWGNDNQ+  QA S+S+NQGTNLED++KAL TNT+SF  EMKQQM+ LT AISK++GKGKLPAQPD+ANVSAISLRSGKI++TP+++EK       E
Subjt:  PNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKIMETPSSEEKASMDDLNE

Query:  DL
        +L
Subjt:  DL
KAA0062400.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.8e-3176.09Show/hide
Query:  PNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKIMETPSSEEK
        PNLRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SF  EMKQQM+ LT AISK++GKGKLPAQPDHANVSAISLRSGKI++TP+++EK
Subjt:  PNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKIMETPSSEEK
KAA0067359.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.3e-3076.09Show/hide
Query:  PNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKIMETPSSEEK
        PNLRWGNDNQ+  QA S+S+NQGTNLED++KALATNT+SF  EMKQQM+ LT AISK++GKGKLPAQ DHANVSAISLRSGKI++TP+++EK
Subjt:  PNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKIMETPSSEEK
TYK26581.1 retrotransposon gag protein [Cucumis melo var. makuwa]8.8e-3176.09Show/hide
Query:  PNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKIMETPSSEEK
        PNLRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SF  EMKQQM+ LT AISK++GKGKLPAQPDHANVSAISLRSGKI++TP+++EK
Subjt:  PNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKIMETPSSEEK
TYK29265.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.3e-3066.96Show/hide
Query:  PNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKIMETPSSEEKASMDDLNE
        P LRWGNDNQ+ IQA S+S+NQGTNLED++KALA NT+SF  EMKQQM+ LT AISK++GKGKLPAQP+HANVSAISLRSGKI++TP+++EK  +D   E
Subjt:  PNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKIMETPSSEEKASMDDLNE

Query:  DLGSSELNATLG
          G+++   TLG
Subjt:  DLGSSELNATLG
TrEMBL top hitse value%identityAlignment
A0A5A7V0Q7 Retrotransposon gag protein1.2e-3069.61Show/hide
Query:  PNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKIMETPSSEEKASMDDLNE
        PNLRWGNDNQ+  QA S+S+NQGTNLED++KAL TNT+SF  EMKQQM+ LT AISK++GKGKLPAQPD+ANVSAISLRSGKI++TP+++EK       E
Subjt:  PNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKIMETPSSEEKASMDDLNE

Query:  DL
        +L
Subjt:  DL
A0A5A7V594 Retrotransposon gag protein4.3e-3176.09Show/hide
Query:  PNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKIMETPSSEEK
        PNLRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SF  EMKQQM+ LT AISK++GKGKLPAQPDHANVSAISLRSGKI++TP+++EK
Subjt:  PNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKIMETPSSEEK
A0A5A7VQ60 Retrotransposon gag protein1.6e-3076.09Show/hide
Query:  PNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKIMETPSSEEK
        PNLRWGNDNQ+  QA S+S+NQGTNLED++KALATNT+SF  EMKQQM+ LT AISK++GKGKLPAQ DHANVSAISLRSGKI++TP+++EK
Subjt:  PNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKIMETPSSEEK
A0A5D3DS57 Retrotransposon gag protein4.3e-3176.09Show/hide
Query:  PNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKIMETPSSEEK
        PNLRWGNDNQ+  QA  +S+NQGTNLED++KALATNT+SF  EMKQQM+ LT AISK++GKGKLPAQPDHANVSAISLRSGKI++TP+++EK
Subjt:  PNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKIMETPSSEEK
A0A5D3E1D2 Retrotransposon gag protein1.6e-3066.96Show/hide
Query:  PNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKIMETPSSEEKASMDDLNE
        P LRWGNDNQ+ IQA S+S+NQGTNLED++KALA NT+SF  EMKQQM+ LT AISK++GKGKLPAQP+HANVSAISLRSGKI++TP+++EK  +D   E
Subjt:  PNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKIMETPSSEEKASMDDLNE

Query:  DLGSSELNATLG
          G+++   TLG
Subjt:  DLGSSELNATLG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTAATCTAAGGTGGGGAAACGACAACCAAAGACCCATACAAGCAGCCTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTAA
TACTATCTCTTTTCATAATGAAATGAAGCAACAGATGTCTCATCTAACCAATGCAATAAGCAAATTAGAAGGTAAAGGCAAACTTCCAGCTCAGCCTGATCATGCCAACG
TAAGTGCCATCTCACTTAGAAGCGGTAAGATTATGGAAACCCCTTCAAGTGAAGAAAAGGCTTCGATGGACGATTTAAACGAAGACCTTGGTAGTAGTGAGTTGAACGCA
ACACTTGGAATTGAGGAAGAGGGGGAAATTTTGGGTATTGCAAATGATACCCCGAAACGGAAAAAGAGAACACGAGGGCCTACTATTATGTTCGATGTAACGCGCATTAG
AAGTTTGAGAGATAAGAAGGTGGTGAGGTACACAATGAATACGGGGTACTGCTTGGTGAGAATGGAGCGAAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTAATCTAAGGTGGGGAAACGACAACCAAAGACCCATACAAGCAGCCTCCTCTTCAAACAATCAAGGTACAAATTTGGAAGATTTAGTTAAAGCTCTTGCTACTAA
TACTATCTCTTTTCATAATGAAATGAAGCAACAGATGTCTCATCTAACCAATGCAATAAGCAAATTAGAAGGTAAAGGCAAACTTCCAGCTCAGCCTGATCATGCCAACG
TAAGTGCCATCTCACTTAGAAGCGGTAAGATTATGGAAACCCCTTCAAGTGAAGAAAAGGCTTCGATGGACGATTTAAACGAAGACCTTGGTAGTAGTGAGTTGAACGCA
ACACTTGGAATTGAGGAAGAGGGGGAAATTTTGGGTATTGCAAATGATACCCCGAAACGGAAAAAGAGAACACGAGGGCCTACTATTATGTTCGATGTAACGCGCATTAG
AAGTTTGAGAGATAAGAAGGTGGTGAGGTACACAATGAATACGGGGTACTGCTTGGTGAGAATGGAGCGAAGTTGA
Protein sequenceShow/hide protein sequence
MPNLRWGNDNQRPIQAASSSNNQGTNLEDLVKALATNTISFHNEMKQQMSHLTNAISKLEGKGKLPAQPDHANVSAISLRSGKIMETPSSEEKASMDDLNEDLGSSELNA
TLGIEEEGEILGIANDTPKRKKRTRGPTIMFDVTRIRSLRDKKVVRYTMNTGYCLVRMERS