; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0004005 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004005
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr04:16165932..16166438
RNA-Seq ExpressionPI0004005
SyntenyPI0004005
Gene Ontology termsGO:0009987 - cellular process (biological process)
GO:0016020 - membrane (cellular component)
InterPro domainsIPR021109 - Aspartic peptidase domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0056980.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]1.8e-4460.59Show/hide
Query:  MEDMGNEAQMTKVCPVVELSINSVGASRRQVRSRSK---EHWRIVRLLLWWIAEQRTIFSLQLVEIFNIPMAETTSYGVIMGSGKAVQGRGMCKGFTVGL
        M D   E +M +V PVVELS+NSV         + K   E+  IV  ++          SL+LVE   +PMAETT+YGVIMGSGKAVQGRGMCKG TVGL
Subjt:  MEDMGNEAQMTKVCPVVELSINSVGASRRQVRSRSK---EHWRIVRLLLWWIAEQRTIFSLQLVEIFNIPMAETTSYGVIMGSGKAVQGRGMCKGFTVGL

Query:  PVMTIVEDFLLLELGNLDMVFDMQWLRKQGSMAVDWRELTMTFSVGETRVVLKGDPSLSRMEVSLKMLTK
        PV++IVEDFL LELGN+DMV  MQWL+KQG+M VDW+ LTMTF VG+T+V+LKGDPSL+RME+SLK+L K
Subjt:  PVMTIVEDFLLLELGNLDMVFDMQWLRKQGSMAVDWRELTMTFSVGETRVVLKGDPSLSRMEVSLKMLTK
KAA0058899.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]5.2e-4460Show/hide
Query:  MEDMGNEAQMTKVCPVVELSINSVGASRRQVRSRSK---EHWRIVRLLLWWIAEQRTIFSLQLVEIFNIPMAETTSYGVIMGSGKAVQGRGMCKGFTVGL
        M D   E +M +V PVVELS+NSV         + K   E+  IV  ++          SL+LVE   +PMAETT+YGVIMGSGKAVQGRGMCKG TVGL
Subjt:  MEDMGNEAQMTKVCPVVELSINSVGASRRQVRSRSK---EHWRIVRLLLWWIAEQRTIFSLQLVEIFNIPMAETTSYGVIMGSGKAVQGRGMCKGFTVGL

Query:  PVMTIVEDFLLLELGNLDMVFDMQWLRKQGSMAVDWRELTMTFSVGETRVVLKGDPSLSRMEVSLKMLTK
        PV++IVEDFL LELGN+DMV  MQWL+KQG+M VDW+ LTMTF VG+T+V+LKGDPSL++ME+SLK+L K
Subjt:  PVMTIVEDFLLLELGNLDMVFDMQWLRKQGSMAVDWRELTMTFSVGETRVVLKGDPSLSRMEVSLKMLTK
TYK10423.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]5.2e-4460Show/hide
Query:  MEDMGNEAQMTKVCPVVELSINSVGASRRQVRSRSK---EHWRIVRLLLWWIAEQRTIFSLQLVEIFNIPMAETTSYGVIMGSGKAVQGRGMCKGFTVGL
        M D   E +M +V PVVELS+NSV         + K   E+  IV  ++          SL+LVE   +PMAETT+YGVIMGSGKAVQGRG+CKG TVGL
Subjt:  MEDMGNEAQMTKVCPVVELSINSVGASRRQVRSRSK---EHWRIVRLLLWWIAEQRTIFSLQLVEIFNIPMAETTSYGVIMGSGKAVQGRGMCKGFTVGL

Query:  PVMTIVEDFLLLELGNLDMVFDMQWLRKQGSMAVDWRELTMTFSVGETRVVLKGDPSLSRMEVSLKMLTK
        PV++IVEDFL LELGN+DMV  MQWL+KQG+M VDW+ LTMTF VG+T+V+LKGDPSL+RME+SLK+L K
Subjt:  PVMTIVEDFLLLELGNLDMVFDMQWLRKQGSMAVDWRELTMTFSVGETRVVLKGDPSLSRMEVSLKMLTK
TYK21209.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]5.2e-4460Show/hide
Query:  MEDMGNEAQMTKVCPVVELSINSVGASRRQVRSRSK---EHWRIVRLLLWWIAEQRTIFSLQLVEIFNIPMAETTSYGVIMGSGKAVQGRGMCKGFTVGL
        M D   E +M +V PVVELS+NSV         + K   E+  IV  ++          SL+LVE   +PMAETT+YGVIMGSGKAVQGRG+CKG TVGL
Subjt:  MEDMGNEAQMTKVCPVVELSINSVGASRRQVRSRSK---EHWRIVRLLLWWIAEQRTIFSLQLVEIFNIPMAETTSYGVIMGSGKAVQGRGMCKGFTVGL

Query:  PVMTIVEDFLLLELGNLDMVFDMQWLRKQGSMAVDWRELTMTFSVGETRVVLKGDPSLSRMEVSLKMLTK
        PV++IVEDFL LELGN+DMV  MQWL+KQG+M VDW+ LTMTF VG+T+V+LKGDPSL+RME+SLK+L K
Subjt:  PVMTIVEDFLLLELGNLDMVFDMQWLRKQGSMAVDWRELTMTFSVGETRVVLKGDPSLSRMEVSLKMLTK
TYK23724.1 Ty3/gypsy retrotransposon protein [Cucumis melo var. makuwa]5.2e-4460Show/hide
Query:  MEDMGNEAQMTKVCPVVELSINSVGASRRQVRSRSK---EHWRIVRLLLWWIAEQRTIFSLQLVEIFNIPMAETTSYGVIMGSGKAVQGRGMCKGFTVGL
        M D   E +M +V PVVELS+NSV         + K   E+  IV  ++          SL+LVE   +PMAETT+YGVIMGSGKAVQGRG+CKG TVGL
Subjt:  MEDMGNEAQMTKVCPVVELSINSVGASRRQVRSRSK---EHWRIVRLLLWWIAEQRTIFSLQLVEIFNIPMAETTSYGVIMGSGKAVQGRGMCKGFTVGL

Query:  PVMTIVEDFLLLELGNLDMVFDMQWLRKQGSMAVDWRELTMTFSVGETRVVLKGDPSLSRMEVSLKMLTK
        PV++IVEDFL LELGN+DMV  MQWL+KQG+M VDW+ LTMTF VG+T+V+LKGDPSL+RME+SLK+L K
Subjt:  PVMTIVEDFLLLELGNLDMVFDMQWLRKQGSMAVDWRELTMTFSVGETRVVLKGDPSLSRMEVSLKMLTK
TrEMBL top hitse value%identityAlignment
A0A5A7UPE1 Ty3/gypsy retrotransposon protein8.7e-4560.59Show/hide
Query:  MEDMGNEAQMTKVCPVVELSINSVGASRRQVRSRSK---EHWRIVRLLLWWIAEQRTIFSLQLVEIFNIPMAETTSYGVIMGSGKAVQGRGMCKGFTVGL
        M D   E +M +V PVVELS+NSV         + K   E+  IV  ++          SL+LVE   +PMAETT+YGVIMGSGKAVQGRGMCKG TVGL
Subjt:  MEDMGNEAQMTKVCPVVELSINSVGASRRQVRSRSK---EHWRIVRLLLWWIAEQRTIFSLQLVEIFNIPMAETTSYGVIMGSGKAVQGRGMCKGFTVGL

Query:  PVMTIVEDFLLLELGNLDMVFDMQWLRKQGSMAVDWRELTMTFSVGETRVVLKGDPSLSRMEVSLKMLTK
        PV++IVEDFL LELGN+DMV  MQWL+KQG+M VDW+ LTMTF VG+T+V+LKGDPSL+RME+SLK+L K
Subjt:  PVMTIVEDFLLLELGNLDMVFDMQWLRKQGSMAVDWRELTMTFSVGETRVVLKGDPSLSRMEVSLKMLTK
A0A5A7UZE8 Ty3/gypsy retrotransposon protein2.5e-4460Show/hide
Query:  MEDMGNEAQMTKVCPVVELSINSVGASRRQVRSRSK---EHWRIVRLLLWWIAEQRTIFSLQLVEIFNIPMAETTSYGVIMGSGKAVQGRGMCKGFTVGL
        M D   E +M +V PVVELS+NSV         + K   E+  IV  ++          SL+LVE   +PMAETT+YGVIMGSGKAVQGRGMCKG TVGL
Subjt:  MEDMGNEAQMTKVCPVVELSINSVGASRRQVRSRSK---EHWRIVRLLLWWIAEQRTIFSLQLVEIFNIPMAETTSYGVIMGSGKAVQGRGMCKGFTVGL

Query:  PVMTIVEDFLLLELGNLDMVFDMQWLRKQGSMAVDWRELTMTFSVGETRVVLKGDPSLSRMEVSLKMLTK
        PV++IVEDFL LELGN+DMV  MQWL+KQG+M VDW+ LTMTF VG+T+V+LKGDPSL++ME+SLK+L K
Subjt:  PVMTIVEDFLLLELGNLDMVFDMQWLRKQGSMAVDWRELTMTFSVGETRVVLKGDPSLSRMEVSLKMLTK
A0A5D3CEX8 Ty3/gypsy retrotransposon protein2.5e-4460Show/hide
Query:  MEDMGNEAQMTKVCPVVELSINSVGASRRQVRSRSK---EHWRIVRLLLWWIAEQRTIFSLQLVEIFNIPMAETTSYGVIMGSGKAVQGRGMCKGFTVGL
        M D   E +M +V PVVELS+NSV         + K   E+  IV  ++          SL+LVE   +PMAETT+YGVIMGSGKAVQGRG+CKG TVGL
Subjt:  MEDMGNEAQMTKVCPVVELSINSVGASRRQVRSRSK---EHWRIVRLLLWWIAEQRTIFSLQLVEIFNIPMAETTSYGVIMGSGKAVQGRGMCKGFTVGL

Query:  PVMTIVEDFLLLELGNLDMVFDMQWLRKQGSMAVDWRELTMTFSVGETRVVLKGDPSLSRMEVSLKMLTK
        PV++IVEDFL LELGN+DMV  MQWL+KQG+M VDW+ LTMTF VG+T+V+LKGDPSL+RME+SLK+L K
Subjt:  PVMTIVEDFLLLELGNLDMVFDMQWLRKQGSMAVDWRELTMTFSVGETRVVLKGDPSLSRMEVSLKMLTK
A0A5D3DD68 Ty3/gypsy retrotransposon protein2.5e-4460Show/hide
Query:  MEDMGNEAQMTKVCPVVELSINSVGASRRQVRSRSK---EHWRIVRLLLWWIAEQRTIFSLQLVEIFNIPMAETTSYGVIMGSGKAVQGRGMCKGFTVGL
        M D   E +M +V PVVELS+NSV         + K   E+  IV  ++          SL+LVE   +PMAETT+YGVIMGSGKAVQGRG+CKG TVGL
Subjt:  MEDMGNEAQMTKVCPVVELSINSVGASRRQVRSRSK---EHWRIVRLLLWWIAEQRTIFSLQLVEIFNIPMAETTSYGVIMGSGKAVQGRGMCKGFTVGL

Query:  PVMTIVEDFLLLELGNLDMVFDMQWLRKQGSMAVDWRELTMTFSVGETRVVLKGDPSLSRMEVSLKMLTK
        PV++IVEDFL LELGN+DMV  MQWL+KQG+M VDW+ LTMTF VG+T+V+LKGDPSL+RME+SLK+L K
Subjt:  PVMTIVEDFLLLELGNLDMVFDMQWLRKQGSMAVDWRELTMTFSVGETRVVLKGDPSLSRMEVSLKMLTK
A0A5D3DRT3 Ty3/gypsy retrotransposon protein2.5e-4460Show/hide
Query:  MEDMGNEAQMTKVCPVVELSINSVGASRRQVRSRSK---EHWRIVRLLLWWIAEQRTIFSLQLVEIFNIPMAETTSYGVIMGSGKAVQGRGMCKGFTVGL
        M D   E +M +V PVVELS+NSV         + K   E+  IV  ++          SL+LVE   +PMAETT+YGVIMGSGKAVQGRG+CKG TVGL
Subjt:  MEDMGNEAQMTKVCPVVELSINSVGASRRQVRSRSK---EHWRIVRLLLWWIAEQRTIFSLQLVEIFNIPMAETTSYGVIMGSGKAVQGRGMCKGFTVGL

Query:  PVMTIVEDFLLLELGNLDMVFDMQWLRKQGSMAVDWRELTMTFSVGETRVVLKGDPSLSRMEVSLKMLTK
        PV++IVEDFL LELGN+DMV  MQWL+KQG+M VDW+ LTMTF VG+T+V+LKGDPSL+RME+SLK+L K
Subjt:  PVMTIVEDFLLLELGNLDMVFDMQWLRKQGSMAVDWRELTMTFSVGETRVVLKGDPSLSRMEVSLKMLTK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G53705.1 aminoacyl-tRNA ligases;nucleotide binding;ATP binding2.5e-0435.38Show/hide
Query:  MGSGKAVQGRGMCKGFTVGLPVMTIVEDFLLLELG--NLDMVFDMQWLRKQGSMAVDWRELTMTF
        MG G+ ++ +G C G ++ +    IVED+LLL+L   + D++   +WL K G   +   E T TF
Subjt:  MGSGKAVQGRGMCKGFTVGLPVMTIVEDFLLLELG--NLDMVFDMQWLRKQGSMAVDWRELTMTF
AT1G53705.2 aminoacyl-tRNA ligases;nucleotide binding;ATP binding2.5e-0435.38Show/hide
Query:  MGSGKAVQGRGMCKGFTVGLPVMTIVEDFLLLELG--NLDMVFDMQWLRKQGSMAVDWRELTMTF
        MG G+ ++ +G C G ++ +    IVED+LLL+L   + D++   +WL K G   +   E T TF
Subjt:  MGSGKAVQGRGMCKGFTVGLPVMTIVEDFLLLELG--NLDMVFDMQWLRKQGSMAVDWRELTMTF
AT3G29750.1 Eukaryotic aspartyl protease family protein5.4e-0726.36Show/hide
Query:  LQLVEIFNIPMAETTSYGVIMGSGKAVQGRGMCKGFTVGLPVMTIVEDFLLLELG--NLDMVFDMQWLRKQGSMAVDWRELTMTFSVGETRVVLKGD-PS
        ++L     +P + T    V++G  + +Q  G C G  + +  + I E+FLLL+L   ++D++   +WL K G   V+W+    +FS  +  + L  +   
Subjt:  LQLVEIFNIPMAETTSYGVIMGSGKAVQGRGMCKGFTVGLPVMTIVEDFLLLELG--NLDMVFDMQWLRKQGSMAVDWRELTMTFSVGETRVVLKGD-PS

Query:  LSRMEVSLKM
        L ++   +KM
Subjt:  LSRMEVSLKM

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAAGACATGGGGAATGAGGCACAAATGACCAAGGTTTGTCCTGTAGTAGAACTATCCATAAACTCGGTGGGGGCCTCACGACGCCAGGTACGTTCAAGGTCAAAGGA
ACACTGGAGGATCGTAAGATTACTATTATGGTGGATTGCGGAGCAACGCACAATTTTCTCTCTTCAATTAGTTGAAATCTTCAACATTCCAATGGCAGAAACAACCAGTT
ATGGGGTCATCATGGGGTCTGGAAAGGCGGTACAAGGGAGAGGAATGTGCAAAGGATTCACGGTGGGATTGCCAGTGATGACCATAGTAGAGGATTTTCTTCTGTTAGAA
CTTGGAAATTTAGATATGGTGTTCGATATGCAGTGGTTGCGAAAACAGGGGTCTATGGCAGTCGATTGGAGGGAGTTAACCATGACCTTCTCAGTAGGTGAGACTCGAGT
AGTTCTCAAAGGGGATCCATCCTTATCTCGAATGGAGGTGTCACTTAAGATGCTGACTAAAAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAAGACATGGGGAATGAGGCACAAATGACCAAGGTTTGTCCTGTAGTAGAACTATCCATAAACTCGGTGGGGGCCTCACGACGCCAGGTACGTTCAAGGTCAAAGGA
ACACTGGAGGATCGTAAGATTACTATTATGGTGGATTGCGGAGCAACGCACAATTTTCTCTCTTCAATTAGTTGAAATCTTCAACATTCCAATGGCAGAAACAACCAGTT
ATGGGGTCATCATGGGGTCTGGAAAGGCGGTACAAGGGAGAGGAATGTGCAAAGGATTCACGGTGGGATTGCCAGTGATGACCATAGTAGAGGATTTTCTTCTGTTAGAA
CTTGGAAATTTAGATATGGTGTTCGATATGCAGTGGTTGCGAAAACAGGGGTCTATGGCAGTCGATTGGAGGGAGTTAACCATGACCTTCTCAGTAGGTGAGACTCGAGT
AGTTCTCAAAGGGGATCCATCCTTATCTCGAATGGAGGTGTCACTTAAGATGCTGACTAAAAAGTAG
Protein sequenceShow/hide protein sequence
MEDMGNEAQMTKVCPVVELSINSVGASRRQVRSRSKEHWRIVRLLLWWIAEQRTIFSLQLVEIFNIPMAETTSYGVIMGSGKAVQGRGMCKGFTVGLPVMTIVEDFLLLE
LGNLDMVFDMQWLRKQGSMAVDWRELTMTFSVGETRVVLKGDPSLSRMEVSLKMLTKK