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PI0004020 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004020
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionArabinogalactan peptide 23
Genome locationchr04:6632129..6632678
RNA-Seq ExpressionPI0004020
SyntenyPI0004020
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR044702 - Arabinogalactan protein 23/40


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043704.1 Arabinogalactan peptide 23 [Cucumis melo var. makuwa]1.6e-1693.33Show/hide
Query:  MDMKKVTCAVLVAAAAVSATMATSEGPSPAPGPSSDATAALPAVGAFIAASLVSFFAYYL
        MDMKKVTCAVLVAAAAVSATMATSEGP+PAP  SSDATAALPAVGAFI ASLVSFFAYYL
Subjt:  MDMKKVTCAVLVAAAAVSATMATSEGPSPAPGPSSDATAALPAVGAFIAASLVSFFAYYL

KAF8043870.1 hypothetical protein BT93_A1997 [Corymbia citriodora subsp. variegata]2.5e-0963.33Show/hide
Query:  MDMKKVTCAVLVAAAAVSATMATSEGPSPAPGPSSDATAALPAVGAFIAASLVSFFAYYL
        MDMKK++CAVLVAAA+++A +A+ + P+PAPGPSS A+AALP   + + AS+VSFFAYYL
Subjt:  MDMKKVTCAVLVAAAAVSATMATSEGPSPAPGPSSDATAALPAVGAFIAASLVSFFAYYL

KCW90250.1 hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis]2.3e-1066.67Show/hide
Query:  MDMKKVTCAVLVAAAAVSATMATSEGPSPAPGPSSDATAALPAVGAFIAASLVSFFAYYL
        MDMKK++CAVLVAAA++SA +A+ + P+PAPGPSS A+AALP  G+ + AS+VSFFAYYL
Subjt:  MDMKKVTCAVLVAAAAVSATMATSEGPSPAPGPSSDATAALPAVGAFIAASLVSFFAYYL

XP_007133088.1 hypothetical protein PHAVU_011G150500g [Phaseolus vulgaris]1.5e-0966.1Show/hide
Query:  MDMKKVTCAVLVAAAAVSATMATSEGPSPAPGPSSDATAALPAVGAFIAASLVSFFAYY
        MDM+KVTCA+L+AAA+VSATMA +E P+PAPGPSS A+AA P VG+ + AS++SFFA +
Subjt:  MDMKKVTCAVLVAAAAVSATMATSEGPSPAPGPSSDATAALPAVGAFIAASLVSFFAYY

XP_038906349.1 arabinogalactan protein 23 [Benincasa hispida]1.1e-1281.97Show/hide
Query:  MDMKKVTCAVLVAAAAVSATMATSEGPSPAPGPSSD-ATAALPAVGAFIAASLVSFFAYYL
        MDMKKVTCAVLV+AA +SATMA+ EGP+PAPG SSD A AALPAVGAFI ASL SFFAYYL
Subjt:  MDMKKVTCAVLVAAAAVSATMATSEGPSPAPGPSSD-ATAALPAVGAFIAASLVSFFAYYL

TrEMBL top hitse value%identityAlignment
A0A059DIY4 Uncharacterized protein (Fragment)1.1e-1066.67Show/hide
Query:  MDMKKVTCAVLVAAAAVSATMATSEGPSPAPGPSSDATAALPAVGAFIAASLVSFFAYYL
        MDMKK++CAVLVAAA++SA +A+ + P+PAPGPSS A+AALP  G+ + AS+VSFFAYYL
Subjt:  MDMKKVTCAVLVAAAAVSATMATSEGPSPAPGPSSDATAALPAVGAFIAASLVSFFAYYL

A0A1R3GYJ0 Arabinogalactan peptide 23-like protein2.1e-0961.67Show/hide
Query:  MDMKKVTCAVLVAAAAVSATMATSEGPSPAPGPSSDATAALPAVGAFIAASLVSFFAYYL
        MDMKK++CAV+VAAA++SA +A  + P+ APGP+SDA +ALP +G+ + ASLVSF AYYL
Subjt:  MDMKKVTCAVLVAAAAVSATMATSEGPSPAPGPSSDATAALPAVGAFIAASLVSFFAYYL

A0A2K3P884 Uncharacterized protein2.1e-0966.1Show/hide
Query:  MDMKKVTCAVLVAAAAVSATMATSEGPSPAPGPSSDATAALPAVGAFIAASLVSFFAYY
        MDM+KVTCAVL+AAA++SA MA++E P+PAPGPSS A+AA+P VG+ + ASLVSF A +
Subjt:  MDMKKVTCAVLVAAAAVSATMATSEGPSPAPGPSSDATAALPAVGAFIAASLVSFFAYY

A0A5D3DQ83 Arabinogalactan peptide 238.0e-1793.33Show/hide
Query:  MDMKKVTCAVLVAAAAVSATMATSEGPSPAPGPSSDATAALPAVGAFIAASLVSFFAYYL
        MDMKKVTCAVLVAAAAVSATMATSEGP+PAP  SSDATAALPAVGAFI ASLVSFFAYYL
Subjt:  MDMKKVTCAVLVAAAAVSATMATSEGPSPAPGPSSDATAALPAVGAFIAASLVSFFAYYL

V7AHI5 Uncharacterized protein7.2e-1066.1Show/hide
Query:  MDMKKVTCAVLVAAAAVSATMATSEGPSPAPGPSSDATAALPAVGAFIAASLVSFFAYY
        MDM+KVTCA+L+AAA+VSATMA +E P+PAPGPSS A+AA P VG+ + AS++SFFA +
Subjt:  MDMKKVTCAVLVAAAAVSATMATSEGPSPAPGPSSDATAALPAVGAFIAASLVSFFAYY

SwissProt top hitse value%identityAlignment
Q8S2W4 Arabinogalactan protein 235.3e-1060Show/hide
Query:  MDMKKVTCAVLVAAAAVSATMATSEGPSPAPGPSSDATAALPAVGAFIAASLVSFFAYYL
        M+MKK+ C VL AAA+++A MA  E  +PAPGP+S A+AALPA+G+ + ASLVS F+YYL
Subjt:  MDMKKVTCAVLVAAAAVSATMATSEGPSPAPGPSSDATAALPAVGAFIAASLVSFFAYYL

Arabidopsis top hitse value%identityAlignment
AT2G41905.1 BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1)3.0e-0855.74Show/hide
Query:  MDMKKVTCAVLVAAAAVSATMATSEGPSPAPGP-SSDATAALPAVGAFIAASLVSFFAYYL
        M+MKK+ C V+ AAA+++A MA   G +PAPGP +S A+ A+PA+G+ + ASLVS FAYYL
Subjt:  MDMKKVTCAVLVAAAAVSATMATSEGPSPAPGP-SSDATAALPAVGAFIAASLVSFFAYYL

AT3G57690.1 arabinogalactan protein 233.8e-1160Show/hide
Query:  MDMKKVTCAVLVAAAAVSATMATSEGPSPAPGPSSDATAALPAVGAFIAASLVSFFAYYL
        M+MKK+ C VL AAA+++A MA  E  +PAPGP+S A+AALPA+G+ + ASLVS F+YYL
Subjt:  MDMKKVTCAVLVAAAAVSATMATSEGPSPAPGPSSDATAALPAVGAFIAASLVSFFAYYL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACATGAAGAAGGTGACCTGTGCCGTCCTCGTTGCCGCTGCCGCCGTGAGTGCTACTATGGCCACCAGTGAAGGGCCATCTCCCGCACCCGGCCCGTCCTCTGATGC
AACTGCTGCTTTGCCAGCTGTTGGAGCTTTCATTGCTGCTTCTCTTGTATCTTTCTTTGCCTACTACTTGTAA
mRNA sequenceShow/hide mRNA sequence
CTCAGTTGAAGCTCAATTATTACTGCATTAAGAAAGATCATTGCTTTTTCTAAGCGGGTCTCTTCTTTCTCATTTTCTTTTTTCTTTACCACCATGGACATGAAGAAGGT
GACCTGTGCCGTCCTCGTTGCCGCTGCCGCCGTGAGTGCTACTATGGCCACCAGTGAAGGGCCATCTCCCGCACCCGGCCCGTCCTCTGATGCAACTGCTGCTTTGCCAG
CTGTTGGAGCTTTCATTGCTGCTTCTCTTGTATCTTTCTTTGCCTACTACTTGTAAAGAAGTTAAGAAACGAATAGGAGGGGGTTGGGAGGTATTCAGAGAAAATATGTT
ATGTAAACATGGGAAAGAGAAACTTGTTAAAGAGTGGTAGTGGTAATTGGTAATTGGTGTGGGTAATTTGGAAGAAAAAAGAATGTTTATTTGAATTTGATTTCGATTTT
AATGCAAAAACTTTTGAATTTGGTTTGATTATTTAATGAGCAAAACTTTCTTGGATTATATATATATATATATTTACTCTTTTGCTATCTTAATTGATTTTTTCATTTGA
Protein sequenceShow/hide protein sequence
MDMKKVTCAVLVAAAAVSATMATSEGPSPAPGPSSDATAALPAVGAFIAASLVSFFAYYL