; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0004109 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004109
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3-gypsy retrotransposon protein
Genome locationchr03:20014691..20016593
RNA-Seq ExpressionPI0004109
SyntenyPI0004109
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043275.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa]9.5e-4362.13Show/hide
Query:  SRDVLQKNDIRTVHSKEEEKHVEDADEGWTLVTRRKKHKQNFSKKESCLYREYKRKGKSQRRKARKNARKFQPITKEGEELPRPRQPITLKDFSPENFPL
        S + LQ ND +T+ SKEEEK ++DADEGWTLVTRRKK KQNFS+KES  YREY+R GKSQRRKARKN RK  PI +E EELPR RQPITLKDF  ENF +
Subjt:  SRDVLQKNDIRTVHSKEEEKHVEDADEGWTLVTRRKKHKQNFSKKESCLYREYKRKGKSQRRKARKNARKFQPITKEGEELPRPRQPITLKDFSPENFPL

Query:  KIVSCHAVSTTEDDTFLSNSAKVSTTGDDTSPSKSAEATTKLEELSSMDINDLLSHPREIKDTIIEILK
        +IV CH + TT+DDTF               PS S E T K E+L S+ INDLL+  +E KDTI+EILK
Subjt:  KIVSCHAVSTTEDDTFLSNSAKVSTTGDDTSPSKSAEATTKLEELSSMDINDLLSHPREIKDTIIEILK

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]2.8e-1061.9Show/hide
Query:  MVTDVDTSEDRMAELEKKVNMLLKVVDERDYEIASLRNYIESRDVLQKNDIRTVHSKEEEKHV
        MVTDVDTSEDRMAELEKKVNML+K V+ERD+EIA L+N+IESRD  + +   T+ +  + K +
Subjt:  MVTDVDTSEDRMAELEKKVNMLLKVVDERDYEIASLRNYIESRDVLQKNDIRTVHSKEEEKHV

KAA0053731.1 uncharacterized protein E6C27_scaffold135G001080 [Cucumis melo var. makuwa]7.0e-3857.99Show/hide
Query:  SRDVLQKNDIRTVHSKEEEKHVEDADEGWTLVTRRKKHKQNFSKKESCLYREYKRKGKSQRRKARKNARKFQPITKEGEELPRPRQPITLKDFSPENFPL
        S + LQ ND RT   KEEEK V++ +EGWTLVTRRKK KQ+FS+KES  YR Y+ KGKSQRR  RKN RKF PI +E E L RPR+PI LKDF P+NFP+
Subjt:  SRDVLQKNDIRTVHSKEEEKHVEDADEGWTLVTRRKKHKQNFSKKESCLYREYKRKGKSQRRKARKNARKFQPITKEGEELPRPRQPITLKDFSPENFPL

Query:  KIVSCHAVSTTEDDTFLSNSAKVSTTGDDTSPSKSAEATTKLEELSSMDINDLLSHPREIKDTIIEILK
        +I SCH  STTE+D F               PS + E T K E+L  + INDLL+  RE+KDTIIEILK
Subjt:  KIVSCHAVSTTEDDTFLSNSAKVSTTGDDTSPSKSAEATTKLEELSSMDINDLLSHPREIKDTIIEILK

KAA0053731.1 uncharacterized protein E6C27_scaffold135G001080 [Cucumis melo var. makuwa]4.0e-0958.73Show/hide
Query:  MVTDVDTSEDRMAELEKKVNMLLKVVDERDYEIASLRNYIESRDVLQKNDIRTVHSKEEEKHV
        MVTDVDTSEDRMA+LEKKVNM +K V+ERD+EIA L+N+IESRD  + +   T+ +  + K +
Subjt:  MVTDVDTSEDRMAELEKKVNMLLKVVDERDYEIASLRNYIESRDVLQKNDIRTVHSKEEEKHV

KAA0053731.1 uncharacterized protein E6C27_scaffold135G001080 [Cucumis melo var. makuwa]7.0e-3857.99Show/hide
Query:  SRDVLQKNDIRTVHSKEEEKHVEDADEGWTLVTRRKKHKQNFSKKESCLYREYKRKGKSQRRKARKNARKFQPITKEGEELPRPRQPITLKDFSPENFPL
        S + LQ ND RT   KEEEK V++ +EGWTLVT RKK KQ+FS+KES  YR Y+ KGKSQRR  +KN RKF PI +E E L RPR+PI LKDF P+NFP+
Subjt:  SRDVLQKNDIRTVHSKEEEKHVEDADEGWTLVTRRKKHKQNFSKKESCLYREYKRKGKSQRRKARKNARKFQPITKEGEELPRPRQPITLKDFSPENFPL

Query:  KIVSCHAVSTTEDDTFLSNSAKVSTTGDDTSPSKSAEATTKLEELSSMDINDLLSHPREIKDTIIEILK
        +IVSCH  STTE+D F               PS S E T K E+L  + INDLL+  RE+KDTIIEILK
Subjt:  KIVSCHAVSTTEDDTFLSNSAKVSTTGDDTSPSKSAEATTKLEELSSMDINDLLSHPREIKDTIIEILK

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]7.8e-3757.4Show/hide
Query:  SRDVLQKNDIRTVHSKEEEKHVEDADEGWTLVTRRKKHKQNFSKKESCLYREYKRKGKSQRRKARKNARKFQPITKEGEELPRPRQPITLKDFSPENFPL
        S + LQ ND R    KEEEK V++ +EGWTLVTRRKK KQ+FS+KES  YR Y+ KGKSQRR  RKN RKF PI +E E L RPR+PI LKDF P+NFP+
Subjt:  SRDVLQKNDIRTVHSKEEEKHVEDADEGWTLVTRRKKHKQNFSKKESCLYREYKRKGKSQRRKARKNARKFQPITKEGEELPRPRQPITLKDFSPENFPL

Query:  KIVSCHAVSTTEDDTFLSNSAKVSTTGDDTSPSKSAEATTKLEELSSMDINDLLSHPREIKDTIIEILK
        +IVSCH  STTE               +D  PS + E T K E+L  + INDLL+  RE+KDTIIEILK
Subjt:  KIVSCHAVSTTEDDTFLSNSAKVSTTGDDTSPSKSAEATTKLEELSSMDINDLLSHPREIKDTIIEILK

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]3.4e-0857.14Show/hide
Query:  MVTDVDTSEDRMAELEKKVNMLLKVVDERDYEIASLRNYIESRDVLQKNDIRTVHSKEEEKHV
        MVTDVDTSEDRM  LEKKVNM +K V+ERD+EIA L+N+IESRD  + +   T+ +  + K +
Subjt:  MVTDVDTSEDRMAELEKKVNMLLKVVDERDYEIASLRNYIESRDVLQKNDIRTVHSKEEEKHV

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]7.8e-3757.4Show/hide
Query:  SRDVLQKNDIRTVHSKEEEKHVEDADEGWTLVTRRKKHKQNFSKKESCLYREYKRKGKSQRRKARKNARKFQPITKEGEELPRPRQPITLKDFSPENFPL
        S + LQ ND R    KEEEK V++ +EGWTLVTRRKK KQ+FS+KES  YR Y+ KGKSQRR  RKN RKF PI +E E L RPR+PI LKDF P+NFP+
Subjt:  SRDVLQKNDIRTVHSKEEEKHVEDADEGWTLVTRRKKHKQNFSKKESCLYREYKRKGKSQRRKARKNARKFQPITKEGEELPRPRQPITLKDFSPENFPL

Query:  KIVSCHAVSTTEDDTFLSNSAKVSTTGDDTSPSKSAEATTKLEELSSMDINDLLSHPREIKDTIIEILK
        +IVSCH  STTE               +D  PS + E T K E+L  + INDLL+  RE+KDTIIEILK
Subjt:  KIVSCHAVSTTEDDTFLSNSAKVSTTGDDTSPSKSAEATTKLEELSSMDINDLLSHPREIKDTIIEILK

TrEMBL top hitse value%identityAlignment
A0A5A7TPD2 Ty3-gypsy retrotransposon protein4.6e-4362.13Show/hide
Query:  SRDVLQKNDIRTVHSKEEEKHVEDADEGWTLVTRRKKHKQNFSKKESCLYREYKRKGKSQRRKARKNARKFQPITKEGEELPRPRQPITLKDFSPENFPL
        S + LQ ND +T+ SKEEEK ++DADEGWTLVTRRKK KQNFS+KES  YREY+R GKSQRRKARKN RK  PI +E EELPR RQPITLKDF  ENF +
Subjt:  SRDVLQKNDIRTVHSKEEEKHVEDADEGWTLVTRRKKHKQNFSKKESCLYREYKRKGKSQRRKARKNARKFQPITKEGEELPRPRQPITLKDFSPENFPL

Query:  KIVSCHAVSTTEDDTFLSNSAKVSTTGDDTSPSKSAEATTKLEELSSMDINDLLSHPREIKDTIIEILK
        +IV CH + TT+DDTF               PS S E T K E+L S+ INDLL+  +E KDTI+EILK
Subjt:  KIVSCHAVSTTEDDTFLSNSAKVSTTGDDTSPSKSAEATTKLEELSSMDINDLLSHPREIKDTIIEILK

A0A5A7TZU9 Ribonuclease H1.3e-1061.9Show/hide
Query:  MVTDVDTSEDRMAELEKKVNMLLKVVDERDYEIASLRNYIESRDVLQKNDIRTVHSKEEEKHV
        MVTDVDTSEDRMAELEKKVNML+K V+ERD+EIA L+N+IESRD  + +   T+ +  + K +
Subjt:  MVTDVDTSEDRMAELEKKVNMLLKVVDERDYEIASLRNYIESRDVLQKNDIRTVHSKEEEKHV

A0A5A7TZU9 Ribonuclease H3.8e-3757.4Show/hide
Query:  SRDVLQKNDIRTVHSKEEEKHVEDADEGWTLVTRRKKHKQNFSKKESCLYREYKRKGKSQRRKARKNARKFQPITKEGEELPRPRQPITLKDFSPENFPL
        S + LQ ND R    KEEEK V++ +EGWTLVTRRKK KQ+FS+KES  YR Y+ KGKSQRR  RKN RKF PI +E E L RPR+PI LKDF P+NFP+
Subjt:  SRDVLQKNDIRTVHSKEEEKHVEDADEGWTLVTRRKKHKQNFSKKESCLYREYKRKGKSQRRKARKNARKFQPITKEGEELPRPRQPITLKDFSPENFPL

Query:  KIVSCHAVSTTEDDTFLSNSAKVSTTGDDTSPSKSAEATTKLEELSSMDINDLLSHPREIKDTIIEILK
        +IVSCH  STTE               +D  PS + E T K E+L  + INDLL+  RE+KDTIIEILK
Subjt:  KIVSCHAVSTTEDDTFLSNSAKVSTTGDDTSPSKSAEATTKLEELSSMDINDLLSHPREIKDTIIEILK

A0A5A7UJR2 Reverse transcriptase3.4e-3857.99Show/hide
Query:  SRDVLQKNDIRTVHSKEEEKHVEDADEGWTLVTRRKKHKQNFSKKESCLYREYKRKGKSQRRKARKNARKFQPITKEGEELPRPRQPITLKDFSPENFPL
        S + LQ ND RT   KEEEK V++ +EGWTLVTRRKK KQ+FS+KES  YR Y+ KGKSQRR  RKN RKF PI +E E L RPR+PI LKDF P+NFP+
Subjt:  SRDVLQKNDIRTVHSKEEEKHVEDADEGWTLVTRRKKHKQNFSKKESCLYREYKRKGKSQRRKARKNARKFQPITKEGEELPRPRQPITLKDFSPENFPL

Query:  KIVSCHAVSTTEDDTFLSNSAKVSTTGDDTSPSKSAEATTKLEELSSMDINDLLSHPREIKDTIIEILK
        +I SCH  STTE+D F               PS + E T K E+L  + INDLL+  RE+KDTIIEILK
Subjt:  KIVSCHAVSTTEDDTFLSNSAKVSTTGDDTSPSKSAEATTKLEELSSMDINDLLSHPREIKDTIIEILK

A0A5A7UJR2 Reverse transcriptase1.9e-0958.73Show/hide
Query:  MVTDVDTSEDRMAELEKKVNMLLKVVDERDYEIASLRNYIESRDVLQKNDIRTVHSKEEEKHV
        MVTDVDTSEDRMA+LEKKVNM +K V+ERD+EIA L+N+IESRD  + +   T+ +  + K +
Subjt:  MVTDVDTSEDRMAELEKKVNMLLKVVDERDYEIASLRNYIESRDVLQKNDIRTVHSKEEEKHV

A0A5A7UJR2 Reverse transcriptase3.8e-3757.4Show/hide
Query:  SRDVLQKNDIRTVHSKEEEKHVEDADEGWTLVTRRKKHKQNFSKKESCLYREYKRKGKSQRRKARKNARKFQPITKEGEELPRPRQPITLKDFSPENFPL
        S + LQ ND R    KEEEK V++ +EGWTLVTRRKK KQ+FS+KES  YR Y+ KGKSQRR  RKN RKF PI +E E L RPR+PI LKDF P+NFP+
Subjt:  SRDVLQKNDIRTVHSKEEEKHVEDADEGWTLVTRRKKHKQNFSKKESCLYREYKRKGKSQRRKARKNARKFQPITKEGEELPRPRQPITLKDFSPENFPL

Query:  KIVSCHAVSTTEDDTFLSNSAKVSTTGDDTSPSKSAEATTKLEELSSMDINDLLSHPREIKDTIIEILK
        +IVSCH  STTE               +D  PS + E T K E+L  + INDLL+  RE+KDTIIEILK
Subjt:  KIVSCHAVSTTEDDTFLSNSAKVSTTGDDTSPSKSAEATTKLEELSSMDINDLLSHPREIKDTIIEILK

A0A5A7VE63 Uncharacterized protein3.4e-3857.99Show/hide
Query:  SRDVLQKNDIRTVHSKEEEKHVEDADEGWTLVTRRKKHKQNFSKKESCLYREYKRKGKSQRRKARKNARKFQPITKEGEELPRPRQPITLKDFSPENFPL
        S + LQ ND RT   KEEEK V++ +EGWTLVT RKK KQ+FS+KES  YR Y+ KGKSQRR  +KN RKF PI +E E L RPR+PI LKDF P+NFP+
Subjt:  SRDVLQKNDIRTVHSKEEEKHVEDADEGWTLVTRRKKHKQNFSKKESCLYREYKRKGKSQRRKARKNARKFQPITKEGEELPRPRQPITLKDFSPENFPL

Query:  KIVSCHAVSTTEDDTFLSNSAKVSTTGDDTSPSKSAEATTKLEELSSMDINDLLSHPREIKDTIIEILK
        +IVSCH  STTE+D F               PS S E T K E+L  + INDLL+  RE+KDTIIEILK
Subjt:  KIVSCHAVSTTEDDTFLSNSAKVSTTGDDTSPSKSAEATTKLEELSSMDINDLLSHPREIKDTIIEILK

A0A5D3BIH8 Uncharacterized protein1.6e-0857.14Show/hide
Query:  MVTDVDTSEDRMAELEKKVNMLLKVVDERDYEIASLRNYIESRDVLQKNDIRTVHSKEEEKHV
        MVTDVDTSEDRM  LEKKVNM +K V+ERD+EIA L+N+IESRD  + +   T+ +  + K +
Subjt:  MVTDVDTSEDRMAELEKKVNMLLKVVDERDYEIASLRNYIESRDVLQKNDIRTVHSKEEEKHV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGACTGATGTCGATACAAGTGAAGATAGAATGGCAGAGCTTGAAAAGAAGGTTAACATGCTCCTGAAAGTGGTTGATGAAAGGGATTATGAGATTGCATCCCTGAG
AAATTACATTGAAAGTCGTGACGTCTTACAGAAAAATGACATCCGAACTGTTCACTCAAAAGAAGAAGAAAAGCACGTGGAGGATGCTGACGAGGGATGGACGCTAGTCA
CGCGTCGGAAAAAGCACAAACAAAATTTTTCTAAAAAAGAATCCTGCTTGTATCGAGAGTATAAAAGAAAGGGTAAGTCTCAGAGAAGAAAAGCAAGGAAGAATGCAAGA
AAGTTTCAACCAATCACCAAAGAAGGTGAGGAGCTTCCTCGACCACGACAACCAATAACTTTGAAAGACTTTTCCCCTGAAAACTTTCCATTGAAAATCGTTTCGTGCCA
TGCTGTCAGTACAACTGAGGATGACACTTTTCTCTCAAATTCCGCAAAAGTCAGTACAACTGGGGACGACACTTCTCCCTCAAAGTCCGCAGAAGCAACAACCAAGCTAG
AGGAATTGTCTTCTATGGACATAAATGATTTGTTGTCACACCCACGAGAAATCAAAGATACAATTATCGAGATATTAAAAAAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGTGACTGATGTCGATACAAGTGAAGATAGAATGGCAGAGCTTGAAAAGAAGGTTAACATGCTCCTGAAAGTGGTTGATGAAAGGGATTATGAGATTGCATCCCTGAG
AAATTACATTGAAAGTCGTGACGTCTTACAGAAAAATGACATCCGAACTGTTCACTCAAAAGAAGAAGAAAAGCACGTGGAGGATGCTGACGAGGGATGGACGCTAGTCA
CGCGTCGGAAAAAGCACAAACAAAATTTTTCTAAAAAAGAATCCTGCTTGTATCGAGAGTATAAAAGAAAGGGTAAGTCTCAGAGAAGAAAAGCAAGGAAGAATGCAAGA
AAGTTTCAACCAATCACCAAAGAAGGTGAGGAGCTTCCTCGACCACGACAACCAATAACTTTGAAAGACTTTTCCCCTGAAAACTTTCCATTGAAAATCGTTTCGTGCCA
TGCTGTCAGTACAACTGAGGATGACACTTTTCTCTCAAATTCCGCAAAAGTCAGTACAACTGGGGACGACACTTCTCCCTCAAAGTCCGCAGAAGCAACAACCAAGCTAG
AGGAATTGTCTTCTATGGACATAAATGATTTGTTGTCACACCCACGAGAAATCAAAGATACAATTATCGAGATATTAAAAAAATGA
Protein sequenceShow/hide protein sequence
MVTDVDTSEDRMAELEKKVNMLLKVVDERDYEIASLRNYIESRDVLQKNDIRTVHSKEEEKHVEDADEGWTLVTRRKKHKQNFSKKESCLYREYKRKGKSQRRKARKNAR
KFQPITKEGEELPRPRQPITLKDFSPENFPLKIVSCHAVSTTEDDTFLSNSAKVSTTGDDTSPSKSAEATTKLEELSSMDINDLLSHPREIKDTIIEILKK