; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0004126 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004126
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description50S ribosomal protein L28
Genome locationchr06:3194199..3194887
RNA-Seq ExpressionPI0004126
SyntenyPI0004126
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR001383 - Ribosomal protein L28
IPR026569 - Ribosomal protein L28/L24
IPR034704 - L28p-like
IPR037147 - Ribosomal protein L28/L24 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004134049.1 50S ribosomal protein L28, chloroplastic [Cucumis sativus]1.0e-7095.33Show/hide
Query:  MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPISTAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKL
        MAASVVFGFTPAAT SGVMTTSSTKLHFRTKPNSDLGFLTSQLSGI+ISSNHSLISP+ ISTAP RPSLQP+ARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPISTAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_008438484.1 PREDICTED: 50S ribosomal protein L28, chloroplastic [Cucumis melo]7.6e-7196Show/hide
Query:  MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPISTAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKL
        MAASVVFGFTPAATS+GVM TSSTKLHFRTKPNSDLGFL SQLSGIKISSNHSLISPSPIS AP RPSLQPIARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPISTAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_022979375.1 50S ribosomal protein L28, chloroplastic [Cucurbita maxima]2.6e-6389.33Show/hide
Query:  MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPISTAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKL
        MA S V GFTP  +SSGVM  SS+KLHFRTKPN +LGFL+SQLSGIKISSNHSLISPSPIS AP RP+LQP+ARRVCPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPISTAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_023526300.1 50S ribosomal protein L28, chloroplastic [Cucurbita pepo subsp. pepo]6.5e-6288Show/hide
Query:  MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPISTAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKL
        MA S V GFTP   SSGVM  SS+KLHFRTKPN +LGFL+SQLSGIKISSNHSLIS SPIS AP RP+LQP+ARRVCPFTGKKAN+KNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPISTAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

XP_038885053.1 50S ribosomal protein L28, chloroplastic [Benincasa hispida]5.3e-6491.33Show/hide
Query:  MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPISTAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKL
        MAA VV GFTP ATSSGVM  SSTKL F TKPNS+LGFLTSQL+GIKISSNHSLISPSPIS AP RP+LQP+ARRVCPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPISTAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

TrEMBL top hitse value%identityAlignment
A0A0A0L501 Uncharacterized protein4.8e-7195.33Show/hide
Query:  MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPISTAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKL
        MAASVVFGFTPAAT SGVMTTSSTKLHFRTKPNSDLGFLTSQLSGI+ISSNHSLISP+ ISTAP RPSLQP+ARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPISTAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A1S3AWK5 50S ribosomal protein L28, chloroplastic3.7e-7196Show/hide
Query:  MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPISTAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKL
        MAASVVFGFTPAATS+GVM TSSTKLHFRTKPNSDLGFL SQLSGIKISSNHSLISPSPIS AP RPSLQPIARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPISTAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A5A7U1W6 50S ribosomal protein L283.7e-7196Show/hide
Query:  MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPISTAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKL
        MAASVVFGFTPAATS+GVM TSSTKLHFRTKPNSDLGFL SQLSGIKISSNHSLISPSPIS AP RPSLQPIARR+CPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPISTAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A6J1E916 50S ribosomal protein L28, chloroplastic3.5e-6187.33Show/hide
Query:  MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPISTAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKL
        MA S V GFTP   SSGVM  SS+KLHFR+K N +LGFL+SQLSGIKISSNHSLIS SPIS AP RP+LQP+ARRVCPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPISTAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

A0A6J1IT28 50S ribosomal protein L28, chloroplastic1.3e-6389.33Show/hide
Query:  MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPISTAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKL
        MA S V GFTP  +SSGVM  SS+KLHFRTKPN +LGFL+SQLSGIKISSNHSLISPSPIS AP RP+LQP+ARRVCPFTGKKANKKNLVSFSNHKTKKL
Subjt:  MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPISTAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKL

Query:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  QFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

SwissProt top hitse value%identityAlignment
B8HUV7 50S ribosomal protein L286.4e-2064Show/hide
Query:  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK
        RVC  TGK+AN    VS S+ +TKKLQ VNLQ+K++WW  GKR+V+LRLSTKALKT+E  GLD+ A++AGIDL K
Subjt:  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK

O22795 50S ribosomal protein L28, chloroplastic5.9e-4269.85Show/hide
Query:  MTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPI---STAPFRPSLQPI-ARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEA
        MT+S+  +   T  + +LGFLTSQLSG++IS      +PS +    + P  P +QPI ARR+CPFTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEA
Subjt:  MTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPI---STAPFRPSLQPI-ARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEA

Query:  GKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        GKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK+
Subjt:  GKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

P30956 50S ribosomal protein L28, chloroplastic1.2e-4574.59Show/hide
Query:  RTKPNSDLGFLTSQLSGIKISSNHSLISPSPISTAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKAL
        ++K +S+L F+TSQLSG+KISS H + S +P+S  PF+PSLQP+ARR+CPFTGKK+N+ N VS SNHKTKKLQFVNLQYK++WWEAGKR+VKLRLSTKA+
Subjt:  RTKPNSDLGFLTSQLSGIKISSNHSLISPSPISTAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKAL

Query:  KTIEKNGLDAVAKKAGIDLRKE
        KTIEKNGLDAVAKKAGIDL K+
Subjt:  KTIEKNGLDAVAKKAGIDLRKE

P82245 50S ribosomal protein L28, chloroplastic2.8e-4469.39Show/hide
Query:  SSGVMTTSSTKLHFR-------TKPN---SDLGFLTSQLSGIKISSNHSL-ISPSPISTAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFV
        +SG++ ++ + + FR        KP    S+LGFLTSQLSGI+IS +    I   PIS AP +PSLQP+ARR+CPFTGKK+NK N VS SNHKTK+LQFV
Subjt:  SSGVMTTSSTKLHFR-------TKPN---SDLGFLTSQLSGIKISSNHSL-ISPSPISTAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFV

Query:  NLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        NLQYK+VWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
Subjt:  NLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE

Q8DG62 50S ribosomal protein L283.7e-2064Show/hide
Query:  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK
        RVC  TGKKAN    +S S+ +TKKLQ VNLQ+K+VWW  GKR+V+LRLSTKA+KT+E+ GL A AK+AG+DL K
Subjt:  RVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK

Arabidopsis top hitse value%identityAlignment
AT2G33450.1 Ribosomal L28 family4.2e-4369.85Show/hide
Query:  MTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPI---STAPFRPSLQPI-ARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEA
        MT+S+  +   T  + +LGFLTSQLSG++IS      +PS +    + P  P +QPI ARR+CPFTGKKAN+ N VSFSNHKTKKLQFVNLQYK+VWWEA
Subjt:  MTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPI---STAPFRPSLQPI-ARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKVWWEA

Query:  GKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE
        GKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRK+
Subjt:  GKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCTTCCGTTGTCTTTGGCTTCACGCCGGCGGCCACTTCTTCCGGTGTAATGACAACCTCCTCAACAAAACTTCACTTCAGAACTAAACCCAATTCCGATCTAGG
ATTTCTCACTTCTCAATTGAGCGGCATCAAAATCTCCTCCAACCACTCACTCATCTCCCCCTCTCCCATTTCTACTGCTCCTTTCAGACCTTCCCTTCAACCTATTGCTC
GTAGAGTTTGTCCATTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAGAAATTGCAGTTTGTGAATCTTCAATACAAGAAGGTT
TGGTGGGAAGCTGGTAAGCGTTTTGTGAAATTACGTTTGTCAACTAAGGCTTTGAAGACTATTGAGAAGAATGGACTTGATGCTGTGGCTAAGAAGGCTGGAATTGATCT
TCGTAAAGAATGA
mRNA sequenceShow/hide mRNA sequence
ATGGCAGCTTCCGTTGTCTTTGGCTTCACGCCGGCGGCCACTTCTTCCGGTGTAATGACAACCTCCTCAACAAAACTTCACTTCAGAACTAAACCCAATTCCGATCTAGG
ATTTCTCACTTCTCAATTGAGCGGCATCAAAATCTCCTCCAACCACTCACTCATCTCCCCCTCTCCCATTTCTACTGCTCCTTTCAGACCTTCCCTTCAACCTATTGCTC
GTAGAGTTTGTCCATTTACTGGAAAGAAAGCAAATAAGAAGAACTTAGTTTCTTTCTCCAACCACAAGACCAAGAAATTGCAGTTTGTGAATCTTCAATACAAGAAGGTT
TGGTGGGAAGCTGGTAAGCGTTTTGTGAAATTACGTTTGTCAACTAAGGCTTTGAAGACTATTGAGAAGAATGGACTTGATGCTGTGGCTAAGAAGGCTGGAATTGATCT
TCGTAAAGAATGA
Protein sequenceShow/hide protein sequence
MAASVVFGFTPAATSSGVMTTSSTKLHFRTKPNSDLGFLTSQLSGIKISSNHSLISPSPISTAPFRPSLQPIARRVCPFTGKKANKKNLVSFSNHKTKKLQFVNLQYKKV
WWEAGKRFVKLRLSTKALKTIEKNGLDAVAKKAGIDLRKE