; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0004133 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004133
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptiontRNA-intron lyase
Genome locationchr11:6014758..6017740
RNA-Seq ExpressionPI0004133
SyntenyPI0004133
Gene Ontology termsGO:0000379 - tRNA-type intron splice site recognition and cleavage (biological process)
GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process)
GO:0000214 - tRNA-intron endonuclease complex (cellular component)
GO:0000213 - tRNA-intron endonuclease activity (molecular function)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR006676 - tRNA-splicing endonuclease
IPR006677 - tRNA intron endonuclease, catalytic domain-like
IPR006678 - tRNA intron endonuclease, N-terminal
IPR011856 - tRNA endonuclease-like domain superfamily
IPR036167 - tRNA intron endonuclease, catalytic domain-like superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035302.1 tRNA-splicing endonuclease subunit Sen2-1 isoform X1 [Cucumis melo var. makuwa]3.0e-13094.98Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        MAPRWKGKASEAKALADPIS+TVLHLQSSF QSNA+GLLSGSTILYLADEEQTDLLNRTCFGR I TAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  EKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVLT
        E NFQELWRYMKTQKATFPEFYIAY+HLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRD+N NGRLRVWSDFLCTIRLCGSVAKTLLVL+
Subjt:  EKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVLT

Query:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
        VNDNGS FVSPSCLDSYSIEERTVTRWSPEQCRENPA+V
Subjt:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV

XP_004149565.1 tRNA-splicing endonuclease subunit Sen2-1 [Cucumis sativus]4.3e-13295.4Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        MAPRWKGKASEAKALADPISNT+LHLQSSF  SNAQGLLSGS ILYLADEEQTDLLNRTCFGRPI TAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  EKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVLT
        EKNFQELWRYMKTQKATFPEFYIAY+HLRLKNWVVRPGSQYGVDFVAYRHHP+LVHSEFAVLVL EGRD+N NGRLRVWSDFLCT+RLCGSVAKTLLVLT
Subjt:  EKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVLT

Query:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
        VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
Subjt:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV

XP_008463899.1 PREDICTED: tRNA-splicing endonuclease subunit Sen2-1 isoform X1 [Cucumis melo]3.0e-13094.98Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        MAPRWKGKASEAKALADPIS+TVLHLQSSF QSNA+GLLSGSTILYLADEEQTDLLNRTCFGR I TAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  EKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVLT
        E NFQELWRYMKTQKATFPEFYIAY+HLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRD+N NGRLRVWSDFLCTIRLCGSVAKTLLVL+
Subjt:  EKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVLT

Query:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
        VNDNGS FVSPSCLDSYSIEERTVTRWSPEQCRENPA+V
Subjt:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV

XP_023532286.1 tRNA-splicing endonuclease subunit Sen2-1-like [Cucurbita pepo subsp. pepo]1.6e-11886.92Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        M PRWKGK SEAKALADP+S  VL LQSS TQS+AQGLLS  ++LY ADEEQ +LLNR CFGRPI +AEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  EKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVLT
        EKNF ELW YMK+QKATFPEFY AYQ+LR+KNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG  +NENGRLRVWSDFLCTIRLCGSVAKTLLVLT
Subjt:  EKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVLT

Query:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPA
        VN NG+  VSPSCLDSYSIEERTVTRWSPEQCRENPA
Subjt:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPA

XP_038900547.1 tRNA-splicing endonuclease subunit Sen2-1 [Benincasa hispida]1.7e-12591.63Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        MAPRWKGK SEAKALADP+SN VL LQSS TQSNAQGLLSGS +LY ADEEQTDLLNR CFGRPI TAEKDKQWFQFGMEEAFYL YHLNCLKIVDGQDC
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  EKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVLT
        EKN QELW+ MK+QK TFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSE+AVLVLSEG  +NENGRLRVWSDFLCTIRLCGSVAKTLLVLT
Subjt:  EKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVLT

Query:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
        VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
Subjt:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV

TrEMBL top hitse value%identityAlignment
A0A0A0KEN4 tRNA-intron lyase2.1e-13295.4Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        MAPRWKGKASEAKALADPISNT+LHLQSSF  SNAQGLLSGS ILYLADEEQTDLLNRTCFGRPI TAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  EKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVLT
        EKNFQELWRYMKTQKATFPEFYIAY+HLRLKNWVVRPGSQYGVDFVAYRHHP+LVHSEFAVLVL EGRD+N NGRLRVWSDFLCT+RLCGSVAKTLLVLT
Subjt:  EKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVLT

Query:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
        VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
Subjt:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV

A0A1S3CK86 tRNA-intron lyase1.5e-13094.98Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        MAPRWKGKASEAKALADPIS+TVLHLQSSF QSNA+GLLSGSTILYLADEEQTDLLNRTCFGR I TAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  EKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVLT
        E NFQELWRYMKTQKATFPEFYIAY+HLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRD+N NGRLRVWSDFLCTIRLCGSVAKTLLVL+
Subjt:  EKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVLT

Query:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
        VNDNGS FVSPSCLDSYSIEERTVTRWSPEQCRENPA+V
Subjt:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV

A0A5A7SVN0 tRNA-intron lyase1.5e-13094.98Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        MAPRWKGKASEAKALADPIS+TVLHLQSSF QSNA+GLLSGSTILYLADEEQTDLLNRTCFGR I TAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  EKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVLT
        E NFQELWRYMKTQKATFPEFYIAY+HLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRD+N NGRLRVWSDFLCTIRLCGSVAKTLLVL+
Subjt:  EKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVLT

Query:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
        VNDNGS FVSPSCLDSYSIEERTVTRWSPEQCRENPA+V
Subjt:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV

A0A6J1FWV5 tRNA-intron lyase1.3e-11887.03Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        M PRWKGKASEA+ALADP+S  VL LQSS TQS+AQGLLSG +ILY ADEEQTDLLNR CFGR I TAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQD 
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  EKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVLT
        EKN QELW+ MK++KATFPEFY+AYQHLR+KNW+VRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG  +NEN RLRVWSDFLCTIRLCGSVAKTLLVL+
Subjt:  EKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVLT

Query:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
        VNDNGSG VSPSCLD+YSIEERTVTRWSPEQCRENP KV
Subjt:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV

A0A6J1JBL2 tRNA-intron lyase1.7e-11886.61Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        M PRWKGKASEA+ALADP+S  VL LQSS TQS+AQGLLSG +ILY ADEEQTDLLNR CFGR I TA+ DKQWFQFGMEEAFYLSYHLNCLKIVDGQD 
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  EKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVLT
        EKN QELW+ MK+QKATFPEFY+AYQHLR+KNW+VRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEG  +NENGRLRVWSDFLCTIRLCGSVAKTLLVL+
Subjt:  EKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVLT

Query:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV
        VNDNG+G VSPSCLDS+SIEERTVTRWSPEQCRENP KV
Subjt:  VNDNGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAKV

SwissProt top hitse value%identityAlignment
Q5Z6B1 Probable tRNA-splicing endonuclease subunit Sen22.2e-5950.62Show/hide
Query:  PRWK----GKASEAKALADPISNTVLHLQSSFTQSNAQGLLS---GSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKIV
        PRWK    GK   + A A+P+S  V  L++SF  S    +LS   GS +L +   EQ  +LNR  FG  I  A   K WFQ   EE FYL + LNC+++ 
Subjt:  PRWK----GKASEAKALADPISNTVLHLQSSFTQSNAQGLLS---GSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKIV

Query:  DGQDCEKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRD-TNENGRLRVWSDFLCTIRLCGSVAK
           + + +  ELW Y ++   +FPE Y AY HLRLKNWVVR G QYG DFVAYRHHPALVHSEFAV+V+ EG +  N  GRL VWSD LC +R  GSVAK
Subjt:  DGQDCEKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRD-TNENGRLRVWSDFLCTIRLCGSVAK

Query:  TLLVLTVNDNGS-GFVSPSCLDSYSIEERTVTRWSPEQCRE
        TLLVLT++ +      SP CL+   + ERT+TRW  +QCRE
Subjt:  TLLVLTVNDNGS-GFVSPSCLDSYSIEERTVTRWSPEQCRE

Q5ZIN2 tRNA-splicing endonuclease subunit Sen25.2e-1630.86Show/hide
Query:  QWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNE
        ++ Q  +EEAF+L Y L CL +  G++      +LW      K +F   Y+AY + R K WV + G +YG D + YR  P   H+ ++  V++E  D N 
Subjt:  QWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNE

Query:  NGRLR---VWSDFLCTIRLCGSVAKTLLVLTV----NDNGSGFVSPSCLDSYSIEERTVTRW
         G LR    W       R   + +K LL+  +    +       +P CL    ++E  VTRW
Subjt:  NGRLR---VWSDFLCTIRLCGSVAKTLLVLTV----NDNGSGFVSPSCLDSYSIEERTVTRW

Q9LSS3 tRNA-splicing endonuclease subunit Sen2-22.2e-6753.16Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        MAPRWK K +EAKALA+PIS +V  LQ S  ++ + G LS   +L   + EQ +LL+R CFGR + +AEK K+W Q   EEAF+L Y+L C+KI     C
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  EKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVLT
         +N  + W YMK+++  FP F+ AY HLR KNWV+R G QYGVDFVAYRHHP+LVHSE++VLV S      ++ RLRVWSD  C +RL GSVAKTLL L 
Subjt:  EKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVLT

Query:  VNDN--GSGFVSPSCLDSYSIEERTVTRWSPEQCREN
        VN N  G       CL+++++EE+T++RWSPE  RE+
Subjt:  VNDN--GSGFVSPSCLDSYSIEERTVTRWSPEQCREN

Q9M1E8 tRNA-splicing endonuclease subunit Sen2-12.2e-6754.77Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD
        MAPRWK K +EAKALA+P+S TV  L+SS TQ+ A G LS   +L   + E+ +LL+R CFGR +  AEKDK+W Q   EEAF+L Y L C+KI + G+ 
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD

Query:  CEKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVL
         E N  +LWR M + K  F   Y AY HLR KNW+VR G QYGVDFV YRHHP+LVHSE+AVLV S G     N RL+VWSD  C++RL GSVAK+LLVL
Subjt:  CEKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  TVND--NGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAK
         VN   N      P CL+ Y++EE+T+ RWSPE  RE+  +
Subjt:  TVND--NGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAK

Q9P6Y2 Probable tRNA-splicing endonuclease subunit tsp-25.6e-1027.81Show/hide
Query:  DKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPE--------------FYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVH
        DK+ FQ   EEAF+L++ L  L++VD         E         + FP                Y  Y H R   WV R G ++GVD++ Y+  P   H
Subjt:  DKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPE--------------FYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVH

Query:  SEFAVLVLSEGRDT-----NENGRLRVWSDFLCTIRLCGSVAKTLLVLTVN
        SEF ++V+    D            + WS  +   R+   V K+L+++ V+
Subjt:  SEFAVLVLSEGRDT-----NENGRLRVWSDFLCTIRLCGSVAKTLLVLTVN

Arabidopsis top hitse value%identityAlignment
AT3G45577.1 tRNA-intron endonucleases7.0e-1644.9Show/hide
Query:  AQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYQHLRLKN
        A G LS   +      EQ +LL+R CFGR +  AEKDK+W Q   EEAF+L Y L C+KI        N  +LWR +++ K  F   Y AY HLR KN
Subjt:  AQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRYMKTQKATFPEFYIAYQHLRLKN

AT3G45590.1 splicing endonuclease 11.6e-6854.77Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD
        MAPRWK K +EAKALA+P+S TV  L+SS TQ+ A G LS   +L   + E+ +LL+R CFGR +  AEKDK+W Q   EEAF+L Y L C+KI + G+ 
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD

Query:  CEKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVL
         E N  +LWR M + K  F   Y AY HLR KNW+VR G QYGVDFV YRHHP+LVHSE+AVLV S G     N RL+VWSD  C++RL GSVAK+LLVL
Subjt:  CEKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  TVND--NGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAK
         VN   N      P CL+ Y++EE+T+ RWSPE  RE+  +
Subjt:  TVND--NGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAK

AT3G45590.2 splicing endonuclease 11.6e-6854.77Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD
        MAPRWK K +EAKALA+P+S TV  L+SS TQ+ A G LS   +L   + E+ +LL+R CFGR +  AEKDK+W Q   EEAF+L Y L C+KI + G+ 
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKI-VDGQD

Query:  CEKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVL
         E N  +LWR M + K  F   Y AY HLR KNW+VR G QYGVDFV YRHHP+LVHSE+AVLV S G     N RL+VWSD  C++RL GSVAK+LLVL
Subjt:  CEKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVL

Query:  TVND--NGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAK
         VN   N      P CL+ Y++EE+T+ RWSPE  RE+  +
Subjt:  TVND--NGSGFVSPSCLDSYSIEERTVTRWSPEQCRENPAK

AT5G60230.1 splicing endonuclease 21.6e-6853.16Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        MAPRWK K +EAKALA+PIS +V  LQ S  ++ + G LS   +L   + EQ +LL+R CFGR + +AEK K+W Q   EEAF+L Y+L C+KI     C
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  EKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVLT
         +N  + W YMK+++  FP F+ AY HLR KNWV+R G QYGVDFVAYRHHP+LVHSE++VLV S      ++ RLRVWSD  C +RL GSVAKTLL L 
Subjt:  EKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVLT

Query:  VNDN--GSGFVSPSCLDSYSIEERTVTRWSPEQCREN
        VN N  G       CL+++++EE+T++RWSPE  RE+
Subjt:  VNDN--GSGFVSPSCLDSYSIEERTVTRWSPEQCREN

AT5G60230.2 splicing endonuclease 21.6e-6853.16Show/hide
Query:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC
        MAPRWK K +EAKALA+PIS +V  LQ S  ++ + G LS   +L   + EQ +LL+R CFGR + +AEK K+W Q   EEAF+L Y+L C+KI     C
Subjt:  MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDC

Query:  EKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVLT
         +N  + W YMK+++  FP F+ AY HLR KNWV+R G QYGVDFVAYRHHP+LVHSE++VLV S      ++ RLRVWSD  C +RL GSVAKTLL L 
Subjt:  EKNFQELWRYMKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVLT

Query:  VNDN--GSGFVSPSCLDSYSIEERTVTRWSPEQCREN
        VN N  G       CL+++++EE+T++RWSPE  RE+
Subjt:  VNDN--GSGFVSPSCLDSYSIEERTVTRWSPEQCREN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGCCGAGATGGAAAGGGAAGGCTTCAGAAGCCAAAGCTCTAGCTGATCCCATCTCCAATACTGTACTTCACCTTCAATCTTCTTTCACACAGTCCAACGCTCAAGG
ATTATTATCTGGTTCTACCATACTTTATCTAGCCGACGAAGAACAAACCGATCTTCTTAATCGCACTTGTTTCGGCCGACCAATTACTACTGCTGAGAAGGACAAACAAT
GGTTTCAATTTGGCATGGAGGAGGCTTTTTACTTGTCCTATCACTTGAATTGCCTCAAAATTGTCGATGGACAAGACTGTGAAAAGAATTTTCAAGAGCTTTGGCGGTAT
ATGAAGACCCAAAAGGCTACATTCCCTGAGTTTTACATTGCTTACCAACATCTTCGATTGAAGAATTGGGTTGTTAGACCTGGATCTCAATATGGGGTTGATTTTGTGGC
GTATCGTCATCATCCGGCTCTTGTTCACTCTGAATTTGCTGTTCTGGTGTTGTCTGAAGGAAGAGACACTAATGAAAATGGGCGATTGAGGGTTTGGTCTGATTTTCTTT
GCACAATTCGGCTTTGTGGAAGTGTTGCTAAAACGTTGCTAGTTCTTACCGTCAATGATAATGGAAGTGGGTTTGTTTCTCCTTCGTGTTTGGACAGTTACTCCATCGAA
GAACGCACAGTTACGAGATGGAGTCCAGAACAGTGCCGTGAAAATCCTGCAAAAGTGTGA
mRNA sequenceShow/hide mRNA sequence
ATCACGCGTTGCTGCCATCGATTTCACTGTTTCACCGCCTGCTTCAATGGCGCCGAGATGGAAAGGGAAGGCTTCAGAAGCCAAAGCTCTAGCTGATCCCATCTCCAATA
CTGTACTTCACCTTCAATCTTCTTTCACACAGTCCAACGCTCAAGGATTATTATCTGGTTCTACCATACTTTATCTAGCCGACGAAGAACAAACCGATCTTCTTAATCGC
ACTTGTTTCGGCCGACCAATTACTACTGCTGAGAAGGACAAACAATGGTTTCAATTTGGCATGGAGGAGGCTTTTTACTTGTCCTATCACTTGAATTGCCTCAAAATTGT
CGATGGACAAGACTGTGAAAAGAATTTTCAAGAGCTTTGGCGGTATATGAAGACCCAAAAGGCTACATTCCCTGAGTTTTACATTGCTTACCAACATCTTCGATTGAAGA
ATTGGGTTGTTAGACCTGGATCTCAATATGGGGTTGATTTTGTGGCGTATCGTCATCATCCGGCTCTTGTTCACTCTGAATTTGCTGTTCTGGTGTTGTCTGAAGGAAGA
GACACTAATGAAAATGGGCGATTGAGGGTTTGGTCTGATTTTCTTTGCACAATTCGGCTTTGTGGAAGTGTTGCTAAAACGTTGCTAGTTCTTACCGTCAATGATAATGG
AAGTGGGTTTGTTTCTCCTTCGTGTTTGGACAGTTACTCCATCGAAGAACGCACAGTTACGAGATGGAGTCCAGAACAGTGCCGTGAAAATCCTGCAAAAGTGTGAAATA
TACCAACTTTTAAGGTATTCTCTTATGAAGATGAACCGTGTGCGGAAATGGAAACCAAGAATTTTGAAGATAATGTAAATGATACAAGATAAGGAGGCAGAGGTTTTAAC
ATGTCAAACGCTGCAACACTAGGAACCACTGAGAAATTATGTCTGTTTTAATGGAGGTTACTACGTTATGATATATTGCCATGGAAGGAAGACCATGACAATATGGCTAG
AGGATGGTCGCTTCCATTGCTGTGTTGCTACAATCAAGAGATCGGTGGTTCTAATCCTCCAAACTCAAAAGGAAGAAAATTGTTGTGTTATTCATGCTAACCAACAATAT
TTCTTGGCCGCTTCGTCGAAGCATGGTCAGTTTATCGGTTTTATTTATTAGGTGAGATGTCATTTTATCTTAAACATGAAAAGAATCTTATGAGTATGTGCATTAAGGAT
TTTGATAGAAGAGTGGAGAAATATGATTATTGAACTATCCATTCACAACGATCAAAGAGCTTTCACACTATTTAACGGAATAATTATTGTAGGGTGATATATATAGTTGA
ATCATTCGAATTCCTTTCGGAATCACTATCATGACTAGTAAAATAGAACATTGTAATACTAATAGCGATCTGTTAATTTGCTCTTGCACCGATCAAAATTTTCGAAACTC
TTGTATTTTGAGTGAGATGTTTTATATATATATGTATTAGTTCTTAGTTCATACATAAGCAAGTT
Protein sequenceShow/hide protein sequence
MAPRWKGKASEAKALADPISNTVLHLQSSFTQSNAQGLLSGSTILYLADEEQTDLLNRTCFGRPITTAEKDKQWFQFGMEEAFYLSYHLNCLKIVDGQDCEKNFQELWRY
MKTQKATFPEFYIAYQHLRLKNWVVRPGSQYGVDFVAYRHHPALVHSEFAVLVLSEGRDTNENGRLRVWSDFLCTIRLCGSVAKTLLVLTVNDNGSGFVSPSCLDSYSIE
ERTVTRWSPEQCRENPAKV