; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0004168 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004168
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description60S ribosomal protein L39
Genome locationchr07:24141136..24142970
RNA-Seq ExpressionPI0004168
SyntenyPI0004168
Gene Ontology termsGO:0006412 - translation (biological process)
GO:0022625 - cytosolic large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR000077 - Ribosomal protein L39e
IPR020083 - Ribosomal protein L39e, conserved site
IPR023626 - Ribosomal protein L39e domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585491.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. sororia]1.6e-20100Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
KAG7024434.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-20100Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
KAG7029487.1 60S ribosomal protein L39, partial [Cucurbita argyrosperma subsp. argyrosperma]1.6e-20100Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
PON37200.1 Ribosomal protein [Trema orientale]1.6e-20100Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
XP_022962571.1 uncharacterized protein LOC111462968 [Cucurbita moschata]1.6e-20100Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
TrEMBL top hitse value%identityAlignment
A0A0A0LYE1 Uncharacterized protein7.7e-21100Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
A0A1S3BCZ7 60S ribosomal protein L397.7e-21100Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
A0A6J1C1Z7 60S ribosomal protein L397.7e-21100Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
A0A6J1F9G6 60S ribosomal protein L397.7e-21100Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
A0A6J1HZ80 60S ribosomal protein L397.7e-21100Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
SwissProt top hitse value%identityAlignment
P51424 60S ribosomal protein L39-18.8e-2294.12Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
P51425 60S ribosomal protein L391.8e-2296.08Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
P51426 60S ribosomal protein L39-21.8e-2296.08Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Q5SMI4 60S ribosomal protein L39-35.2e-2294.12Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTF+IKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Q6KAJ8 60S ribosomal protein L39-11.8e-2296.08Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHKTFRIKKKLAKKMRQNRPIP+WIR+RTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Arabidopsis top hitse value%identityAlignment
AT2G25210.1 Ribosomal protein L39 family protein5.5e-1997.67Show/hide
Query:  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  IKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
AT3G02190.1 Ribosomal protein L39 family protein2.0e-2190.2Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHK+F IKKKL KKMRQNRPIP+WIRLRTDN IRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
AT4G31985.1 Ribosomal protein L39 family protein6.3e-2394.12Show/hide
Query:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
        MPSHK+F IKKKL KKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF
Subjt:  MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGTCTCACAAGACTTTTAGAATCAAGAAGAAGCTCGCGAAGAAGATGAGGCAGAATAGGCCGATCCCGCACTGGATCCGCCTGAGAACCGACAACACGATCAGATA
CAACGCAAAGCGCAGGCACTGGCGTCGCACCAAGCTAGGGTTCTGA
mRNA sequenceShow/hide mRNA sequence
TAAAGGTTCTTCGCTCCTGATAGGGTTTACGTTTATTTCGCCGTCTGCTTCCCAAGCTCACCGTCGATCGCCGGAACCTGAAAATGCCGTCTCACAAGACTTTTAGAATC
AAGAAGAAGCTCGCGAAGAAGATGAGGCAGAATAGGCCGATCCCGCACTGGATCCGCCTGAGAACCGACAACACGATCAGATACAACGCAAAGCGCAGGCACTGGCGTCG
CACCAAGCTAGGGTTCTGAGGTGCTTTCGATTCCTAACTTCATTGTTCATTTACCTTGATTTTGTTAAGTTTCAGAACTTGAATTTTCTTAAGGATCTACATTTGTATTT
CCGCAACTGAAATTTAGTTTATCGGATATTTTTGTTTAATCATCGTTACACTCAAGATTGAAGTGCTTTGGAATAGAGTGAATTTACCATCAATTTTTATGTGTTTAGAG
TAGCATTTTTGCCGAACCTTTATGGCATTTAGTTGCTTAATTTCTACAAAATTGATCAAAGTTGGTGATTCTTGAAAAAATTGTTCATTTAAATTTACAAATCACAATTT
ATCTCTTCTTAGCAATAGATGTAATCATTTTAGGATTTAGCTTTATAATCTTTTAATCTGTGAAATGTGTTTAATTTGTTTGTAACCAACTCATAAAACTGTGTAGCCAA
AATATACTTGTTCATTCACAATTGACCTTCGTATACGTTGAAAGATTATCAAGAAATTCCAACTAGCTTATCCTAGAACTTAGAAGAGACTTTACATATATATTACATAA
TCATATACACCTACAACCTTTGGTGCTTCTGAAAGAGAGACTTCTTGAGATACCCTTCTATAGAGCACTCATATTTCTATATATTCTATAGGTTCTACGTTTCTATCCTT
GAGTTCTTAGTACTTTCATCTGTAGTTGATCTAAACAGACTAGTCTTCACGCCAAAGGACAAGGTTCTACATTTGTGTCTGTGTTCTGAGTAGTTCCATCTATAGTTGAT
CTGAACAGACTAGTGTTTGATACAACAGTCGGTAGAGGTACAGAACTTGGTGGTGGTGAGACACCGAAGGATGAGGTTCCGGCGTAGAATAATCGCTCGTTTGTATTACG
AGTGAACTTGTCACTGCATTGAAACTTAACCTTGGACTTGTTTAGACTTCGTTTTCGTTTGTGTGGAGGTCTGTAAGGTATGGCGTTGTTAGAACCATCTTGAGGACAGC
GAAGAAGAACTTGCTTTGAGTGAATTTGCATGGTGGAGTGTAAAGCAAATAGTGAATGCTTCAATAGAAAGGAAGAGAATAATTTGTTCATCATTGAGAGGAAGGAGTGA
TCTTTAAAGAAGAATTAGTGTCTGGGCTTAATAAGGAAATAAATTGGATTGGATTTGGATTGTTGAAGGCGGTTTTATCAATATTATAAATTACAAATTACAAATAGAAA
ATTAGATTTGGTATTTTTAATAGGAAAAAAAATAATTTAGGGATCATTATCGTAGCTCATGATACTATTTTTTAAAGATTTGATTTGCTATAAAAATTAAATTAGTATTT
TCAACTACATTTTTTAGAATTAAAAGATTAATTAATCCCTCATTTTGAAGTTTG
Protein sequenceShow/hide protein sequence
MPSHKTFRIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF