; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0004173 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004173
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionPre-mRNA cleavage factor Im 25 kDa subunit
Genome locationchr05:179260..182128
RNA-Seq ExpressionPI0004173
SyntenyPI0004173
Gene Ontology termsGO:0006378 - mRNA polyadenylation (biological process)
GO:0006457 - protein folding (biological process)
GO:0005832 - chaperonin-containing T-complex (cellular component)
GO:0005849 - mRNA cleavage factor complex (cellular component)
GO:0003729 - mRNA binding (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0016887 - ATPase activity (molecular function)
GO:0051082 - unfolded protein binding (molecular function)
InterPro domainsIPR016706 - Cleavage/polyadenylation specificity factor subunit 5


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6586493.1 Pre-mRNA cleavage factor Im 25 kDa subunit 1, partial [Cucurbita argyrosperma subsp. sororia]1.3e-10686.64Show/hide
Query:  MGDDGRLHAIDDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRP
        MGDDGR+HA++DDE+++ADQ+  IDIYPLSNYYFGSKEPL+FKD+TL+DRV+RMKSNYAAYGLRT VEAV+LVELFKHPH+LL QIRNSIF LPGGRLRP
Subjt:  MGDDGRLHAIDDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRP

Query:  NESDIDGLTRKLSRKLSANGASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVI
        NESDIDGL RKLSRKLSANGA DASDWEV +CLG WWR DFETLL+PYLS NVKGAKECTKLFLVKLPESRKF+VPKNLKLIAVPLCQ+HENHK YGPVI
Subjt:  NESDIDGLTRKLSRKLSANGASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVI

Query:  SGIPQLLSKFSFNIIET
        SGIPQLLSKFSFNIIET
Subjt:  SGIPQLLSKFSFNIIET

XP_004141062.1 pre-mRNA cleavage factor Im 25 kDa subunit 1 [Cucumis sativus]1.9e-11595.39Show/hide
Query:  MGDDGRLHAIDDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRP
        MGDDGRLHAIDDD+ASSA QLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAA+GLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGR+RP
Subjt:  MGDDGRLHAIDDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRP

Query:  NESDIDGLTRKLSRKLSANGASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVI
        NESDIDGLTRKL++KLSANGASDAS WEVSECLGMWWR DFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGP+I
Subjt:  NESDIDGLTRKLSRKLSANGASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVI

Query:  SGIPQLLSKFSFNIIET
        SGIPQLLSKFSFNII T
Subjt:  SGIPQLLSKFSFNIIET

XP_008459551.1 PREDICTED: pre-mRNA cleavage factor Im 25 kDa subunit 1 [Cucumis melo]4.7e-11494.52Show/hide
Query:  MGDDGRLHAI--DDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRL
        MGDDGRLHAI  DDD+ASSA QLSYIDIYPLSNYYFGSKEPLLFKDETLSDR+LRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRL
Subjt:  MGDDGRLHAI--DDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRL

Query:  RPNESDIDGLTRKLSRKLSANGASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGP
        RPNESDIDGLTRKLS+KL ANGASDASDWEV+ECLGMWWR DFETLLFPYLSTNVKGAKEC KLFLVKLPES+KFVVPKNLKLIAVPLCQIHENHKTYGP
Subjt:  RPNESDIDGLTRKLSRKLSANGASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGP

Query:  VISGIPQLLSKFSFNIIET
        VISGIPQLLSKFSFNII T
Subjt:  VISGIPQLLSKFSFNIIET

XP_023536755.1 pre-mRNA cleavage factor Im 25 kDa subunit 1 [Cucurbita pepo subsp. pepo]4.8e-10686.18Show/hide
Query:  MGDDGRLHAIDDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRP
        MGDDGR+HA++DDE+++ADQ+  IDIYPLSNYYFGSKEPL+FKD+TL+DRV+RMKSNYAAYGLRT VEAV+LVELFKHPH+LL QIRNSIF LPGGRLRP
Subjt:  MGDDGRLHAIDDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRP

Query:  NESDIDGLTRKLSRKLSANGASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVI
        NESDIDGL RKLSRKLSANGA DASDWEV +CLG WWR DFETLL+P+LS NVKGAKECTKLFLVKLPESRKF+VPKNLKLIAVPLCQ+HENHK YGPVI
Subjt:  NESDIDGLTRKLSRKLSANGASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVI

Query:  SGIPQLLSKFSFNIIET
        SGIPQLLSKFSFNIIET
Subjt:  SGIPQLLSKFSFNIIET

XP_038889512.1 pre-mRNA cleavage factor Im 25 kDa subunit 1 [Benincasa hispida]4.2e-11091.71Show/hide
Query:  MGDDGRLHAIDDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRP
        MGDDGRLHA+DDDEAS+ADQ   I IYPLSNYYF SKEPLLFKDET +DR+LRMKSNYAAYGLRT VEAV+LVELFKHPHLLLFQIRNSIFKLPGGRLRP
Subjt:  MGDDGRLHAIDDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRP

Query:  NESDIDGLTRKLSRKLSANGASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVI
        NESD+DGLTRKLSRKLSANGASDASDWEV ECLGMWWR DFETLLFPYLS+ VKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVI
Subjt:  NESDIDGLTRKLSRKLSANGASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVI

Query:  SGIPQLLSKFSFNIIET
        SGIPQLLSKFSF+IIET
Subjt:  SGIPQLLSKFSFNIIET

TrEMBL top hitse value%identityAlignment
A0A0A0LIM0 Pre-mRNA cleavage factor Im 25 kDa subunit9.3e-11695.39Show/hide
Query:  MGDDGRLHAIDDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRP
        MGDDGRLHAIDDD+ASSA QLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAA+GLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGR+RP
Subjt:  MGDDGRLHAIDDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRP

Query:  NESDIDGLTRKLSRKLSANGASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVI
        NESDIDGLTRKL++KLSANGASDAS WEVSECLGMWWR DFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGP+I
Subjt:  NESDIDGLTRKLSRKLSANGASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVI

Query:  SGIPQLLSKFSFNIIET
        SGIPQLLSKFSFNII T
Subjt:  SGIPQLLSKFSFNIIET

A0A1S3C9Z9 Pre-mRNA cleavage factor Im 25 kDa subunit2.3e-11494.52Show/hide
Query:  MGDDGRLHAI--DDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRL
        MGDDGRLHAI  DDD+ASSA QLSYIDIYPLSNYYFGSKEPLLFKDETLSDR+LRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRL
Subjt:  MGDDGRLHAI--DDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRL

Query:  RPNESDIDGLTRKLSRKLSANGASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGP
        RPNESDIDGLTRKLS+KL ANGASDASDWEV+ECLGMWWR DFETLLFPYLSTNVKGAKEC KLFLVKLPES+KFVVPKNLKLIAVPLCQIHENHKTYGP
Subjt:  RPNESDIDGLTRKLSRKLSANGASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGP

Query:  VISGIPQLLSKFSFNIIET
        VISGIPQLLSKFSFNII T
Subjt:  VISGIPQLLSKFSFNIIET

A0A6J1DN47 Pre-mRNA cleavage factor Im 25 kDa subunit1.3e-10486.11Show/hide
Query:  MGDDGRLHAIDDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRP
        MGD+G LHA++DDEA++A+Q   + IYPL NYYFGSKEPLLFK+ETL+DR+ RMKSNYAA GLRTCVEAV+LVELFKHPHLLL QIRNSIFKLPGGRLRP
Subjt:  MGDDGRLHAIDDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRP

Query:  NESDIDGLTRKLSRKLSANGASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVI
        NESDIDGL RKLSRKLSANG SDASDWEV ECLGMWWR DFETLL+PYLS+NVKGAKECTKLFLVKLPESRKF+VPKNLKLIAVPLCQ+HEN KTYGPVI
Subjt:  NESDIDGLTRKLSRKLSANGASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVI

Query:  SGIPQLLSKFSFNIIE
        SG+PQLLSKFSFNIIE
Subjt:  SGIPQLLSKFSFNIIE

A0A6J1FHN4 Pre-mRNA cleavage factor Im 25 kDa subunit3.9e-10685.71Show/hide
Query:  MGDDGRLHAIDDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRP
        MGDDGR+HA++DDE+++ADQ+  IDIYPLSNYYFGSKEPL+FKD+TL+DRV+RMKSNYAAYGLRT VEAV+LVELFKHPH+LL QIRNSIF LPGGRLRP
Subjt:  MGDDGRLHAIDDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRP

Query:  NESDIDGLTRKLSRKLSANGASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVI
        NESDIDGL RKLSRKLSANGA DASDWEV +CLG WWR DFETLL+P+LS NVKGAKECTKLFLVKLPE+RKF+VPKNLKLIAVPLCQ+HENHK YGPVI
Subjt:  NESDIDGLTRKLSRKLSANGASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVI

Query:  SGIPQLLSKFSFNIIET
        SGIPQLLSKFSFNIIET
Subjt:  SGIPQLLSKFSFNIIET

A0A6J1HNY2 Pre-mRNA cleavage factor Im 25 kDa subunit5.1e-10686.18Show/hide
Query:  MGDDGRLHAIDDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRP
        MGDDGR+HA++DDE+++ADQ+  IDIYPLSNYYFGSKEPL+FKD+TL+DRV+RMKSNYAAYGLRT VEAV+LVELFKHPH+LL QIRNSIF LPGGRLRP
Subjt:  MGDDGRLHAIDDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRP

Query:  NESDIDGLTRKLSRKLSANGASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVI
        NESDIDGL RKLSRKLSANG+ DASDWEV +CLG WWR DFETLL PYLS NVKGAKECTKLFLVKLPESRKF+VPKNLKLIAVPLCQ+HENHK YGPVI
Subjt:  NESDIDGLTRKLSRKLSANGASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVI

Query:  SGIPQLLSKFSFNIIET
        SGIPQLLSKFSFNIIET
Subjt:  SGIPQLLSKFSFNIIET

SwissProt top hitse value%identityAlignment
O43809 Cleavage and polyadenylation specificity factor subunit 52.2e-4545.03Show/hide
Query:  IDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSRKLSANGASD
        I++YPL+NY FG+KEPL  KD +++ R  RM+  +   G+R  VE V++V   + PH+LL Q+  + FKLPGG L P E +++GL R ++  L   G  D
Subjt:  IDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSRKLSANGASD

Query:  A--SDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVISGIPQLLSKFSF
            DW + +C+G WWR +FE   +PY+  ++   KE  KLFLV+L E   F VPKN KL+A PL ++++N   YGP+IS +PQLLS+F+F
Subjt:  A--SDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVISGIPQLLSKFSF

Q3ZCA2 Cleavage and polyadenylation specificity factor subunit 52.2e-4545.03Show/hide
Query:  IDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSRKLSANGASD
        I++YPL+NY FG+KEPL  KD +++ R  RM+  +   G+R  VE V++V   + PH+LL Q+  + FKLPGG L P E +++GL R ++  L   G  D
Subjt:  IDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSRKLSANGASD

Query:  A--SDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVISGIPQLLSKFSF
            DW + +C+G WWR +FE   +PY+  ++   KE  KLFLV+L E   F VPKN KL+A PL ++++N   YGP+IS +PQLLS+F+F
Subjt:  A--SDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVISGIPQLLSKFSF

Q7T3C6 Cleavage and polyadenylation specificity factor subunit 51.7e-4545.03Show/hide
Query:  IDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSRKLSANGASD
        I++YPL+NY FG+KEPL  KD +++ R  RM+  +   G+R  VE V++V   + PH+LL Q+  + FKLPGG L P E +++GL R ++  L   G  D
Subjt:  IDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSRKLSANGASD

Query:  A--SDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVISGIPQLLSKFSF
            DW + +C+G WWR +FE   +PY+  ++   KE  KLFLV+L E   F VPKN KL+A PL ++++N   YGP+IS +PQLLS+F+F
Subjt:  A--SDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVISGIPQLLSKFSF

Q8GXS3 Pre-mRNA cleavage factor Im 25 kDa subunit 22.2e-5853.09Show/hide
Query:  IDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSRKLSANGASD
        ++ YPLSNY FG+KEP L KD +++DR+ RMK NY   G+RT VE ++LV+   HPH+LL QI N+  KLPGGRL+P E++ DGL RKL+ KL  N A+ 
Subjt:  IDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSRKLSANGASD

Query:  ASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVISGIPQLLSKFSFNIIET
          DW V EC+  WWR +FET+++PY   ++   KEC +L++V L E   F VPKNLKL+AVPL ++++N + YGPVIS IPQ LS+F FN+I +
Subjt:  ASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVISGIPQLLSKFSFNIIET

Q94AF0 Pre-mRNA cleavage factor Im 25 kDa subunit 13.6e-8065.16Show/hide
Query:  MGDDGR---LHAIDDDEASSADQLS--YIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPG
        MG++ R   +  I D+     D +    +D+YPLS+YYFGSKE L  KDE +SDRV+R+KSNYAA+GLRTCVEAV+LVELFKHPH+LL Q RNSIFKLPG
Subjt:  MGDDGR---LHAIDDDEASSADQLS--YIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPG

Query:  GRLRPNESDIDGLTRKLSRKLSANGASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKT
        GRLRP ESDI+GL RKL+ KLS N     S +EV EC+GMWWR +FETL++P+L  N+K  KECTKLFLV+LP  ++FVVPKN KL+AVPLCQ+HEN KT
Subjt:  GRLRPNESDIDGLTRKLSRKLSANGASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKT

Query:  YGPVISGIPQLLSKFSFNIIE
        YGP++S IP+LLSKFSFN++E
Subjt:  YGPVISGIPQLLSKFSFNIIE

Arabidopsis top hitse value%identityAlignment
AT4G25550.1 Cleavage/polyadenylation specificity factor, 25kDa subunit1.6e-5953.09Show/hide
Query:  IDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSRKLSANGASD
        ++ YPLSNY FG+KEP L KD +++DR+ RMK NY   G+RT VE ++LV+   HPH+LL QI N+  KLPGGRL+P E++ DGL RKL+ KL  N A+ 
Subjt:  IDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTRKLSRKLSANGASD

Query:  ASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVISGIPQLLSKFSFNIIET
          DW V EC+  WWR +FET+++PY   ++   KEC +L++V L E   F VPKNLKL+AVPL ++++N + YGPVIS IPQ LS+F FN+I +
Subjt:  ASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVISGIPQLLSKFSFNIIET

AT4G29820.1 homolog of CFIM-252.5e-8165.16Show/hide
Query:  MGDDGR---LHAIDDDEASSADQLS--YIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPG
        MG++ R   +  I D+     D +    +D+YPLS+YYFGSKE L  KDE +SDRV+R+KSNYAA+GLRTCVEAV+LVELFKHPH+LL Q RNSIFKLPG
Subjt:  MGDDGR---LHAIDDDEASSADQLS--YIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPG

Query:  GRLRPNESDIDGLTRKLSRKLSANGASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKT
        GRLRP ESDI+GL RKL+ KLS N     S +EV EC+GMWWR +FETL++P+L  N+K  KECTKLFLV+LP  ++FVVPKN KL+AVPLCQ+HEN KT
Subjt:  GRLRPNESDIDGLTRKLSRKLSANGASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKT

Query:  YGPVISGIPQLLSKFSFNIIE
        YGP++S IP+LLSKFSFN++E
Subjt:  YGPVISGIPQLLSKFSFNIIE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGACGACGGACGTCTGCATGCTATTGACGACGATGAAGCTTCTTCCGCCGACCAACTCTCTTACATCGATATCTACCCTCTCAGCAACTACTACTTCGGATCCAA
AGAGCCTCTTCTTTTCAAGGATGAGACCTTGTCTGATCGTGTCCTCAGGATGAAATCCAATTATGCTGCTTACGGATTGAGGACTTGCGTCGAAGCAGTTATGCTGGTTG
AACTATTCAAGCATCCTCATTTGTTGCTGTTTCAAATACGTAATTCAATTTTCAAGCTTCCTGGTGGTCGCCTAAGGCCCAACGAATCAGATATTGATGGCTTGACACGA
AAGTTGTCGAGGAAGCTTTCTGCCAACGGAGCCTCTGATGCTTCTGATTGGGAGGTTAGCGAGTGCCTCGGTATGTGGTGGAGGGCGGACTTTGAGACCTTGCTCTTTCC
GTATTTGTCCACTAATGTAAAAGGGGCCAAGGAGTGCACTAAACTTTTCTTGGTCAAGTTGCCAGAGAGTCGAAAATTTGTTGTGCCAAAGAACCTCAAGTTGATCGCAG
TTCCTTTATGCCAAATTCACGAAAACCATAAGACATATGGGCCAGTTATATCGGGCATTCCGCAGCTTCTTTCTAAGTTCTCCTTCAACATCATCGAAACCTAA
mRNA sequenceShow/hide mRNA sequence
GTTTAGCATCATTCTATTCTATTCTCAAATTCCATCTCGTCCCTTCCCTTTTGCTTTCCCAGTGGTCGTCTTGTCCGTCTCTTATTTTAGTCTTTAATTAGACTTTAGAA
TTAAAATTCCGCAGGGTGAGTGACGCCATTCCACTTTTCCGCTTCGTGTCCCTTCTCTCCAACCAACACGACATCTTTCTTCTTCTTCATACTTCCTACTACCACCATAC
CTATATTCCTTTAAACTACCTTTTCATTCTCCTTCTGATCTTCATTTCTCAATCCTCGCCATGGGAGACGACGGACGTCTGCATGCTATTGACGACGATGAAGCTTCTTC
CGCCGACCAACTCTCTTACATCGATATCTACCCTCTCAGCAACTACTACTTCGGATCCAAAGAGCCTCTTCTTTTCAAGGATGAGACCTTGTCTGATCGTGTCCTCAGGA
TGAAATCCAATTATGCTGCTTACGGATTGAGGACTTGCGTCGAAGCAGTTATGCTGGTTGAACTATTCAAGCATCCTCATTTGTTGCTGTTTCAAATACGTAATTCAATT
TTCAAGCTTCCTGGTGGTCGCCTAAGGCCCAACGAATCAGATATTGATGGCTTGACACGAAAGTTGTCGAGGAAGCTTTCTGCCAACGGAGCCTCTGATGCTTCTGATTG
GGAGGTTAGCGAGTGCCTCGGTATGTGGTGGAGGGCGGACTTTGAGACCTTGCTCTTTCCGTATTTGTCCACTAATGTAAAAGGGGCCAAGGAGTGCACTAAACTTTTCT
TGGTCAAGTTGCCAGAGAGTCGAAAATTTGTTGTGCCAAAGAACCTCAAGTTGATCGCAGTTCCTTTATGCCAAATTCACGAAAACCATAAGACATATGGGCCAGTTATA
TCGGGCATTCCGCAGCTTCTTTCTAAGTTCTCCTTCAACATCATCGAAACCTAAGATTCATCTTATTAATTATAACAGATGAAGAACTATGGTCGAAGCAGAGAAAAGAA
TATTTATTAGTGCATTATAGAGCTGTCAGCAAACTTTATATGAATGTTGACCGACCCTGTATAAAACATATTATAAGCACATAAATCATGGTGATGATTTTGTAAGTATA
AAGATATATAGTAGTAATATAGGTCCACATTGTCACTTTACCACTTGTGTGTTTGAGTGCTAAAAACTACACATGATTGTGCCAATTATCTTGACTTTCTTGTGGTAATG
AATAGAGTTTTGATCATTCTCACTAGAGGATGCGGAGAAGTGATGAGGTATGATAGAGGAAATTTTGTGTATATGTATGAGGTATGTTAGAGGAAATTGTGTGTATACGT
ATGGATAGTGAAGGTTGTGTTTATGTATTTATGTGTTTACGTGTTTATGCTGTGTCAAAAGTGGAAAATAAATATGTGTTAAGTATGTTAGAGGAAATTGTGTACATGTA
TGGATAGTGAAGGTTGCGTTATATATGATTGTTATCCTTATCGGACAGTTTTTG
Protein sequenceShow/hide protein sequence
MGDDGRLHAIDDDEASSADQLSYIDIYPLSNYYFGSKEPLLFKDETLSDRVLRMKSNYAAYGLRTCVEAVMLVELFKHPHLLLFQIRNSIFKLPGGRLRPNESDIDGLTR
KLSRKLSANGASDASDWEVSECLGMWWRADFETLLFPYLSTNVKGAKECTKLFLVKLPESRKFVVPKNLKLIAVPLCQIHENHKTYGPVISGIPQLLSKFSFNIIET