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PI0004186 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004186
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein
Genome locationchr06:19633240..19633542
RNA-Seq ExpressionPI0004186
SyntenyPI0004186
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0003676 - nucleic acid binding (molecular function)
InterPro domainsIPR043128 - Reverse transcriptase/Diguanylate cyclase domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MCH92231.1 hypothetical protein [Trifolium medium]1.3e-2264.2Show/hide
Query:  DKAKIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSFIIDDKCKKAFDELKQRLVSTPILQSPN
        D AKIDVI    +P C++++RS+LG AGFYRRFIKDFS+IALPL++LLQKD+ F  DDKCK+AFD LK+ L STP++Q P+
Subjt:  DKAKIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSFIIDDKCKKAFDELKQRLVSTPILQSPN

XP_021603241.1 uncharacterized protein LOC110608326 [Manihot esculenta]9.8e-2364.2Show/hide
Query:  DKAKIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSFIIDDKCKKAFDELKQRLVSTPILQSPN
        DKAK+DVI+   YP C++D+RS+LG AGFYRRFIKDFSRIA PL  LLQKDV F  D++C++AF+ LK++LV+ PI+Q+PN
Subjt:  DKAKIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSFIIDDKCKKAFDELKQRLVSTPILQSPN

XP_028797073.1 LOW QUALITY PROTEIN: uncharacterized protein LOC114752508 [Prosopis alba]5.2e-2467.9Show/hide
Query:  DKAKIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSFIIDDKCKKAFDELKQRLVSTPILQSPN
        DKAKID+I    YP C+KDVRS+LG AGFYRRFI+DFS+IALPL+ LLQKDV F+ DD C+ A+DELK+RL + PI+Q PN
Subjt:  DKAKIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSFIIDDKCKKAFDELKQRLVSTPILQSPN

XP_028798815.1 LOW QUALITY PROTEIN: uncharacterized protein LOC114754213 [Prosopis alba]5.2e-2467.9Show/hide
Query:  DKAKIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSFIIDDKCKKAFDELKQRLVSTPILQSPN
        DKAKID+I    YP C+KDVRS+LG AGFYRRFI+DFS+IALPL+ LLQKDV F+ DD C+ A+DELK+RL + PI+Q PN
Subjt:  DKAKIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSFIIDDKCKKAFDELKQRLVSTPILQSPN

XP_028802716.1 uncharacterized protein LOC114757797 [Prosopis alba]4.0e-2467.9Show/hide
Query:  DKAKIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSFIIDDKCKKAFDELKQRLVSTPILQSPN
        DKAKID+I    YP C+KDVRS+LG AGFYRRFI+DFS+IALPL+ LLQKDV F+ DD C+ A+DELK+RL + PI+Q PN
Subjt:  DKAKIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSFIIDDKCKKAFDELKQRLVSTPILQSPN

TrEMBL top hitse value%identityAlignment
A0A0L9TXH6 Reverse transcriptase1.4e-2262.96Show/hide
Query:  DKAKIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSFIIDDKCKKAFDELKQRLVSTPILQSPN
        D AKI VI +  YP C+++VRS+LG AGFYRRFIKDFS+  LPL+ LLQKD+ F  DD+CK+AFD LKQ L++TPI+Q+P+
Subjt:  DKAKIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSFIIDDKCKKAFDELKQRLVSTPILQSPN

A0A151QL68 Transposon Ty3-G Gag-Pol polyprotein1.4e-2265.43Show/hide
Query:  DKAKIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSFIIDDKCKKAFDELKQRLVSTPILQSPN
        DKAKI+VI    YP C+K++RS+LG AGFYRRFIKDFS+IA PL+ LLQKD  F  ++ C+ AFDELK RLVS PIL +PN
Subjt:  DKAKIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSFIIDDKCKKAFDELKQRLVSTPILQSPN

A0A151QZW2 Transposon Ty3-G Gag-Pol polyprotein (Fragment)5.2e-2260.49Show/hide
Query:  DKAKIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSFIIDDKCKKAFDELKQRLVSTPILQSPN
        D AK+ VI +  YP C+++VRS+LG AGFYRRF+K+FS+ ALPL++LLQKDV F+ DD+CK+AFD LK+ L +TPI+Q+P+
Subjt:  DKAKIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSFIIDDKCKKAFDELKQRLVSTPILQSPN

A0A2K3NDP5 RT_RNaseH_2 domain-containing protein (Fragment)8.1e-2366.67Show/hide
Query:  DKAKIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSFIIDDKCKKAFDELKQRLVSTPILQSPN
        D AKI+V     YP C+ ++RS+LG AGFY RFIKDFS+IALPL++LLQKDV+F  DDKCKKAFD LK  L STPI+Q PN
Subjt:  DKAKIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSFIIDDKCKKAFDELKQRLVSTPILQSPN

A0A392MXJ5 Uncharacterized protein (Fragment)6.2e-2364.2Show/hide
Query:  DKAKIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSFIIDDKCKKAFDELKQRLVSTPILQSPN
        D AKIDVI    +P C++++RS+LG AGFYRRFIKDFS+IALPL++LLQKD+ F  DDKCK+AFD LK+ L STP++Q P+
Subjt:  DKAKIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSFIIDDKCKKAFDELKQRLVSTPILQSPN

SwissProt top hitse value%identityAlignment
P03359 Gag-Pol polyprotein7.1e-0836.71Show/hide
Query:  AKIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSFIIDDKCKKAFDELKQRLVSTPILQSPN
        A+   + K   P   + VR +LG+AGF R +I  F+ +A PL  L ++ + FI  ++ +KAFD +K+ L+S P L  P+
Subjt:  AKIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSFIIDDKCKKAFDELKQRLVSTPILQSPN

P04323 Retrovirus-related Pol polyprotein from transposon 17.69.2e-0836.71Show/hide
Query:  KIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSF-IIDDKCKKAFDELKQRLVSTPILQSPN
        KI+ IQK   P   K+++++LG  G+YR+FI +F+ IA P+T  L+K++     + +   AF +LK  +   PIL+ P+
Subjt:  KIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSF-IIDDKCKKAFDELKQRLVSTPILQSPN

P10394 Retrovirus-related Pol polyprotein from transposon 4123.7e-0938.27Show/hide
Query:  DKAKIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSFIIDDKCKKAFDELKQRLVSTPILQSPN
        D  K DVIQ    P      R ++    +YRRFIK+F+  +  +T L +K+V F   D+C+KAF  LK +L++  +LQ P+
Subjt:  DKAKIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSFIIDDKCKKAFDELKQRLVSTPILQSPN

P21414 Gag-Pol polyprotein1.6e-0735.44Show/hide
Query:  AKIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSFIIDDKCKKAFDELKQRLVSTPILQSPN
        A+   + K   P   + VR +LG+AGF R +I  F+ +A PL  L ++ + FI  ++ ++AFD +K+ L+S P L  P+
Subjt:  AKIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSFIIDDKCKKAFDELKQRLVSTPILQSPN

P92523 Uncharacterized mitochondrial protein AtMg008604.1e-0836.9Show/hide
Query:  VSHDKAKIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSFIIDDKCKKAFDELKQRLVSTPILQSPN
        VS D AK++ +     PK   ++R +LG  G+YRRF+K++ +I  PLT LL+K+ S    +    AF  LK  + + P+L  P+
Subjt:  VSHDKAKIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSFIIDDKCKKAFDELKQRLVSTPILQSPN

Arabidopsis top hitse value%identityAlignment
ATMG00860.1 DNA/RNA polymerases superfamily protein2.9e-0936.9Show/hide
Query:  VSHDKAKIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSFIIDDKCKKAFDELKQRLVSTPILQSPN
        VS D AK++ +     PK   ++R +LG  G+YRRF+K++ +I  PLT LL+K+ S    +    AF  LK  + + P+L  P+
Subjt:  VSHDKAKIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSFIIDDKCKKAFDELKQRLVSTPILQSPN


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTTTCTCATGATAAAGCTAAAATTGACGTAATTCAAAAACGGTCATATCCAAAATGCTTAAAAGATGTTAGATCATATTTAGGCAGCGCCGGTTTTTATAGAAGGTT
TATTAAAGACTTTTCTAGAATTGCTTTACCTCTAACTTCTCTTCTTCAGAAAGATGTGTCATTCATCATAGATGACAAATGCAAGAAGGCATTTGACGAGCTTAAACAAA
GGTTAGTCTCTACTCCTATACTTCAATCTCCTAATTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTTTCTCATGATAAAGCTAAAATTGACGTAATTCAAAAACGGTCATATCCAAAATGCTTAAAAGATGTTAGATCATATTTAGGCAGCGCCGGTTTTTATAGAAGGTT
TATTAAAGACTTTTCTAGAATTGCTTTACCTCTAACTTCTCTTCTTCAGAAAGATGTGTCATTCATCATAGATGACAAATGCAAGAAGGCATTTGACGAGCTTAAACAAA
GGTTAGTCTCTACTCCTATACTTCAATCTCCTAATTGA
Protein sequenceShow/hide protein sequence
MVSHDKAKIDVIQKRSYPKCLKDVRSYLGSAGFYRRFIKDFSRIALPLTSLLQKDVSFIIDDKCKKAFDELKQRLVSTPILQSPN