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PI0004226 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004226
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr02:14192791..14194021
RNA-Seq ExpressionPI0004226
SyntenyPI0004226
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]5.7e-3557.53Show/hide
Query:  KSHPTIKNLLNKLFPYYDGIPYVFGKDQATGGRSKTFTDVGSNVPGDF-DGLLLDDSHDLEISTMYSQELDMSPDELLGTQSGRSSEGRNASSGRKRKQG
        +SHP  K LL+K FPYYD + YVFG D ATG  S+TF D GSNV   F DG+ L DSH+ +I T+YSQ + MS DE+ G ++G++SE RN SSG KRK+G
Subjt:  KSHPTIKNLLNKLFPYYDGIPYVFGKDQATGGRSKTFTDVGSNVPGDF-DGLLLDDSHDLEISTMYSQELDMSPDELLGTQSGRSSEGRNASSGRKRKQG

Query:  GQLSKTVEVIRNAKEFANYQLKAIVDWPKEKRATKAELHGEVIKHL
         +  + VEVI +A EF N QLK I DWPKEKRAT+ EL  EV+K L
Subjt:  GQLSKTVEVIRNAKEFANYQLKAIVDWPKEKRATKAELHGEVIKHL

KAA0033290.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]4.1e-4148.4Show/hide
Query:  MTNAEILNEVDESDSTYTTTEGIADHRLLGQIPRKNLPSDPRNARAILQWLQMERRIPVYDAERKLFNGWVKSHPTI--KNLLNKLFPYYDGIPYVFGKD
        MTN+EI++++DE DSTY TT G                                  I   +A     NGW +    +  K+LL+K FPYYD + YVFGKD
Subjt:  MTNAEILNEVDESDSTYTTTEGIADHRLLGQIPRKNLPSDPRNARAILQWLQMERRIPVYDAERKLFNGWVKSHPTI--KNLLNKLFPYYDGIPYVFGKD

Query:  QATGGRSKTFTDVGSNVPGDFDG-LLLDDSHDLEISTMYSQELDMSPDELLGTQSGRSSEGRNASSGRKRKQGGQLSKTVEVIRNAKEFANYQLKAIVDW
        +AT  RS+TF DVGSNVP  F+G + LDDSHD +I  MYSQ + MSPDE+ G ++G++SE +N SSG KRKQG +  +TVEVI++A EF N QLKAI +W
Subjt:  QATGGRSKTFTDVGSNVPGDFDG-LLLDDSHDLEISTMYSQELDMSPDELLGTQSGRSSEGRNASSGRKRKQGGQLSKTVEVIRNAKEFANYQLKAIVDW

Query:  PKEKRATKAELHGEVIKHL
        PKEKRAT+ EL  EV+K L
Subjt:  PKEKRATKAELHGEVIKHL

KAA0042340.1 retrotransposon protein [Cucumis melo var. makuwa]1.8e-4162.25Show/hide
Query:  FNGWVKSHPTIKNLLNKLFPYYDGIPYVFGKDQATGGRSKTFTDVGSNVPGDF-DGLLLDDSHDLEISTMYSQELDMSPDELLGTQSGRSSEGRNASSGR
        F+ W++SHPT+K LLNK FPYYD + YVFGKDQAT  RS+TF DVGSN+P  F DG+ L DSH  +I TMYSQ + MS DE+ GT++G++SE RN SS  
Subjt:  FNGWVKSHPTIKNLLNKLFPYYDGIPYVFGKDQATGGRSKTFTDVGSNVPGDF-DGLLLDDSHDLEISTMYSQELDMSPDELLGTQSGRSSEGRNASSGR

Query:  KRKQGGQLSKTVEVIRNAKEFANYQLKAIVDWPKEKRATKAELHGEVIKHL
        KRKQG Q  +TVEVIR+A +F N QLKAI DW KEKRA K EL   V+K L
Subjt:  KRKQGGQLSKTVEVIRNAKEFANYQLKAIVDWPKEKRATKAELHGEVIKHL

KAA0056515.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]5.7e-3558.04Show/hide
Query:  SHPTIKNLLNKLFPYYDGIPYVFGKDQATGGRSKTFTDVGSNVPGDF-DGLLLDDSHDLEISTMYSQELDMSPDELLGTQSGRSSEGRNASSGRKRKQGG
        SHP  K LL+K FPYYD + YVFGKD+AT  RS+TF+ VGSNVP  F DG+ L DSH+ +I  MYSQ + MS DE+ G ++G++SE RN SSG KRK+G 
Subjt:  SHPTIKNLLNKLFPYYDGIPYVFGKDQATGGRSKTFTDVGSNVPGDF-DGLLLDDSHDLEISTMYSQELDMSPDELLGTQSGRSSEGRNASSGRKRKQGG

Query:  QLSKTVEVIRNAKEFANYQLKAIVDWPKEKRATKAELHGEVIK
        +  + VEVIR+  +F N QLK I DWPK+KRAT+ EL  EV+K
Subjt:  QLSKTVEVIRNAKEFANYQLKAIVDWPKEKRATKAELHGEVIK

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]1.3e-4259.62Show/hide
Query:  AERKLFNGWVKSHPTIKNLLNKLFPYYDGIPYVFGKDQATGGRSKTFTDVGSNVPGDF-DGLLLDDSHDLEISTMYSQELDMSPDELLGTQSGRSSEGRN
        AER LF+ W+KSHP  K LL+K FPYYD + YVFGKD+ATG RS+TF +VGSNV   F D + L DSHD +I TMYSQ + MSPDE+ G ++G++SE RN
Subjt:  AERKLFNGWVKSHPTIKNLLNKLFPYYDGIPYVFGKDQATGGRSKTFTDVGSNVPGDF-DGLLLDDSHDLEISTMYSQELDMSPDELLGTQSGRSSEGRN

Query:  ASSGRKRKQGGQLSKTVEVIRNAKEFANYQLKAIVDWPKEKRATKAELHGEVIKHL
         SS  KRK+G +  +TVEVIR+  EF N QLKAI DWPKEKRA + E+  +V+K L
Subjt:  ASSGRKRKQGGQLSKTVEVIRNAKEFANYQLKAIVDWPKEKRATKAELHGEVIKHL

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859536.1e-4359.62Show/hide
Query:  AERKLFNGWVKSHPTIKNLLNKLFPYYDGIPYVFGKDQATGGRSKTFTDVGSNVPGDF-DGLLLDDSHDLEISTMYSQELDMSPDELLGTQSGRSSEGRN
        AER LF+ W+KSHP  K LL+K FPYYD + YVFGKD+ATG RS+TF +VGSNV   F D + L DSHD +I TMYSQ + MSPDE+ G ++G++SE RN
Subjt:  AERKLFNGWVKSHPTIKNLLNKLFPYYDGIPYVFGKDQATGGRSKTFTDVGSNVPGDF-DGLLLDDSHDLEISTMYSQELDMSPDELLGTQSGRSSEGRN

Query:  ASSGRKRKQGGQLSKTVEVIRNAKEFANYQLKAIVDWPKEKRATKAELHGEVIKHL
         SS  KRK+G +  +TVEVIR+  EF N QLKAI DWPKEKRA + E+  +V+K L
Subjt:  ASSGRKRKQGGQLSKTVEVIRNAKEFANYQLKAIVDWPKEKRATKAELHGEVIKHL

A0A5A7SQU2 Putative nuclease HARBI12.0e-4148.4Show/hide
Query:  MTNAEILNEVDESDSTYTTTEGIADHRLLGQIPRKNLPSDPRNARAILQWLQMERRIPVYDAERKLFNGWVKSHPTI--KNLLNKLFPYYDGIPYVFGKD
        MTN+EI++++DE DSTY TT G                                  I   +A     NGW +    +  K+LL+K FPYYD + YVFGKD
Subjt:  MTNAEILNEVDESDSTYTTTEGIADHRLLGQIPRKNLPSDPRNARAILQWLQMERRIPVYDAERKLFNGWVKSHPTI--KNLLNKLFPYYDGIPYVFGKD

Query:  QATGGRSKTFTDVGSNVPGDFDG-LLLDDSHDLEISTMYSQELDMSPDELLGTQSGRSSEGRNASSGRKRKQGGQLSKTVEVIRNAKEFANYQLKAIVDW
        +AT  RS+TF DVGSNVP  F+G + LDDSHD +I  MYSQ + MSPDE+ G ++G++SE +N SSG KRKQG +  +TVEVI++A EF N QLKAI +W
Subjt:  QATGGRSKTFTDVGSNVPGDFDG-LLLDDSHDLEISTMYSQELDMSPDELLGTQSGRSSEGRNASSGRKRKQGGQLSKTVEVIRNAKEFANYQLKAIVDW

Query:  PKEKRATKAELHGEVIKHL
        PKEKRAT+ EL  EV+K L
Subjt:  PKEKRATKAELHGEVIKHL

A0A5A7U0H7 Retrotransposon protein6.1e-4359.62Show/hide
Query:  AERKLFNGWVKSHPTIKNLLNKLFPYYDGIPYVFGKDQATGGRSKTFTDVGSNVPGDF-DGLLLDDSHDLEISTMYSQELDMSPDELLGTQSGRSSEGRN
        AER LF+ W+KSHP  K LL+K FPYYD + YVFGKD+ATG RS+TF +VGSNV   F D + L DSHD +I TMYSQ + MSPDE+ G ++G++SE RN
Subjt:  AERKLFNGWVKSHPTIKNLLNKLFPYYDGIPYVFGKDQATGGRSKTFTDVGSNVPGDF-DGLLLDDSHDLEISTMYSQELDMSPDELLGTQSGRSSEGRN

Query:  ASSGRKRKQGGQLSKTVEVIRNAKEFANYQLKAIVDWPKEKRATKAELHGEVIKHL
         SS  KRK+G +  +TVEVIR+  EF N QLKAI DWPKEKRA + E+  +V+K L
Subjt:  ASSGRKRKQGGQLSKTVEVIRNAKEFANYQLKAIVDWPKEKRATKAELHGEVIKHL

A0A5A7USN6 Putative nuclease HARBI12.8e-3558.04Show/hide
Query:  SHPTIKNLLNKLFPYYDGIPYVFGKDQATGGRSKTFTDVGSNVPGDF-DGLLLDDSHDLEISTMYSQELDMSPDELLGTQSGRSSEGRNASSGRKRKQGG
        SHP  K LL+K FPYYD + YVFGKD+AT  RS+TF+ VGSNVP  F DG+ L DSH+ +I  MYSQ + MS DE+ G ++G++SE RN SSG KRK+G 
Subjt:  SHPTIKNLLNKLFPYYDGIPYVFGKDQATGGRSKTFTDVGSNVPGDF-DGLLLDDSHDLEISTMYSQELDMSPDELLGTQSGRSSEGRNASSGRKRKQGG

Query:  QLSKTVEVIRNAKEFANYQLKAIVDWPKEKRATKAELHGEVIK
        +  + VEVIR+  +F N QLK I DWPK+KRAT+ EL  EV+K
Subjt:  QLSKTVEVIRNAKEFANYQLKAIVDWPKEKRATKAELHGEVIK

A0A5D3CVB7 Retrotransposon protein8.9e-4262.25Show/hide
Query:  FNGWVKSHPTIKNLLNKLFPYYDGIPYVFGKDQATGGRSKTFTDVGSNVPGDF-DGLLLDDSHDLEISTMYSQELDMSPDELLGTQSGRSSEGRNASSGR
        F+ W++SHPT+K LLNK FPYYD + YVFGKDQAT  RS+TF DVGSN+P  F DG+ L DSH  +I TMYSQ + MS DE+ GT++G++SE RN SS  
Subjt:  FNGWVKSHPTIKNLLNKLFPYYDGIPYVFGKDQATGGRSKTFTDVGSNVPGDF-DGLLLDDSHDLEISTMYSQELDMSPDELLGTQSGRSSEGRNASSGR

Query:  KRKQGGQLSKTVEVIRNAKEFANYQLKAIVDWPKEKRATKAELHGEVIKHL
        KRKQG Q  +TVEVIR+A +F N QLKAI DW KEKRA K EL   V+K L
Subjt:  KRKQGGQLSKTVEVIRNAKEFANYQLKAIVDWPKEKRATKAELHGEVIKHL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTAATGCTGAAATCCTCAACGAGGTGGATGAGAGTGATTCAACCTACACCACAACTGAAGGGATCGCCGACCATAGATTGTTGGGTCAAATCCCTAGAAAGAACCT
ACCAAGCGACCCCAGAAATGCGAGAGCCATCCTGCAGTGGCTTCAGATGGAACGAAGAATACCAGTGTATGATGCAGAACGAAAGTTGTTCAACGGTTGGGTGAAGAGTC
ATCCTACAATAAAGAACCTCTTAAACAAATTGTTTCCTTATTATGATGGCATACCCTATGTGTTTGGTAAAGATCAGGCCACGGGAGGACGATCAAAGACCTTTACTGAT
GTAGGATCTAATGTACCAGGCGACTTCGATGGTCTTCTCCTTGATGATTCACATGATCTGGAGATCTCGACGATGTATAGTCAAGAACTGGATATGTCACCTGATGAGCT
GTTGGGAACACAGTCAGGTCGATCTAGTGAAGGAAGAAATGCTTCAAGTGGAAGGAAGAGGAAACAAGGTGGCCAACTGTCTAAAACTGTAGAGGTCATTAGGAATGCAA
AGGAATTTGCAAATTACCAGTTAAAGGCAATTGTAGATTGGCCAAAAGAAAAGCGTGCAACGAAGGCCGAACTACATGGGGAAGTCATCAAACATTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGACTAATGCTGAAATCCTCAACGAGGTGGATGAGAGTGATTCAACCTACACCACAACTGAAGGGATCGCCGACCATAGATTGTTGGGTCAAATCCCTAGAAAGAACCT
ACCAAGCGACCCCAGAAATGCGAGAGCCATCCTGCAGTGGCTTCAGATGGAACGAAGAATACCAGTGTATGATGCAGAACGAAAGTTGTTCAACGGTTGGGTGAAGAGTC
ATCCTACAATAAAGAACCTCTTAAACAAATTGTTTCCTTATTATGATGGCATACCCTATGTGTTTGGTAAAGATCAGGCCACGGGAGGACGATCAAAGACCTTTACTGAT
GTAGGATCTAATGTACCAGGCGACTTCGATGGTCTTCTCCTTGATGATTCACATGATCTGGAGATCTCGACGATGTATAGTCAAGAACTGGATATGTCACCTGATGAGCT
GTTGGGAACACAGTCAGGTCGATCTAGTGAAGGAAGAAATGCTTCAAGTGGAAGGAAGAGGAAACAAGGTGGCCAACTGTCTAAAACTGTAGAGGTCATTAGGAATGCAA
AGGAATTTGCAAATTACCAGTTAAAGGCAATTGTAGATTGGCCAAAAGAAAAGCGTGCAACGAAGGCCGAACTACATGGGGAAGTCATCAAACATTTGTAA
Protein sequenceShow/hide protein sequence
MTNAEILNEVDESDSTYTTTEGIADHRLLGQIPRKNLPSDPRNARAILQWLQMERRIPVYDAERKLFNGWVKSHPTIKNLLNKLFPYYDGIPYVFGKDQATGGRSKTFTD
VGSNVPGDFDGLLLDDSHDLEISTMYSQELDMSPDELLGTQSGRSSEGRNASSGRKRKQGGQLSKTVEVIRNAKEFANYQLKAIVDWPKEKRATKAELHGEVIKHL