; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0004238 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004238
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Descriptionreplication protein A 32 kDa subunit A-like
Genome locationchr04:30589210..30594186
RNA-Seq ExpressionPI0004238
SyntenyPI0004238
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0006260 - DNA replication (biological process)
GO:0006289 - nucleotide-excision repair (biological process)
GO:0000781 - chromosome, telomeric region (cellular component)
GO:0005662 - DNA replication factor A complex (cellular component)
GO:0035861 - site of double-strand break (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0008168 - methyltransferase activity (molecular function)
InterPro domainsIPR004365 - OB-fold nucleic acid binding domain, AA-tRNA synthetase-type
IPR012340 - Nucleic acid-binding, OB-fold
IPR014646 - Replication factor A protein 2
IPR014892 - Replication protein A, C-terminal
IPR036388 - Winged helix-like DNA-binding domain superfamily
IPR036390 - Winged helix DNA-binding domain superfamily
IPR040260 - Replication factor A protein-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7024504.1 Replication protein A 32 kDa subunit A [Cucurbita argyrosperma subsp. argyrosperma]1.6e-13088.19Show/hide
Query:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDAF
        MFSS+QFDS SGFTSSQT DSSSAK+RE+PGLVP TVKQISEASHSGEEKANF INGVDITNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVND F
Subjt:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDAF

Query:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQNLKGDGSTQLQTSDSIVTTPVQNGSNGYHTISLAIPSEQ
        DTKQM+EIQDGMY+RVNGHLK+FQSNKQIFAFSVRP+TNF+EITFHFIECIH+HLRNSKLQNL G GSTQ Q+SDSIV TP+QNGS+GY T S  +PSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQNLKGDGSTQLQTSDSIVTTPVQNGSNGYHTISLAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKK+CD+L+LDYLQLPSSVAKERGIHRDELSQQLKIPMEKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

XP_004136317.1 replication protein A 32 kDa subunit A [Cucumis sativus]1.5e-14196.31Show/hide
Query:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDAF
        MFSSTQFDSASGFTSSQTNDSSSAKSRESPGL+PVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVND F
Subjt:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDAF

Query:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQNLKGDGSTQLQTSDSIVTTPVQNGSNGYHTISLAIPSEQ
        DT QMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNF+EITFHFIECIHDHLRNSKLQNLKG+GSTQLQTSDSIV TPVQNGSNGYHT S AIPSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQNLKGDGSTQLQTSDSIVTTPVQNGSNGYHTISLAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKKSCDELVLDYLQLPSSVAKERGIH+DELSQQLK+PMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

XP_008466326.1 PREDICTED: replication protein A 32 kDa subunit A-like [Cucumis melo]2.6e-14196.68Show/hide
Query:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDAF
        MFSSTQFDS SGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVIN VDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVND F
Subjt:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDAF

Query:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQNLKGDGSTQLQTSDSIVTTPVQNGSNGYHTISLAIPSEQ
        DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNF+EITFHF+ECIHDHLRNSKLQNLKGDGSTQLQTSDSIV TPVQNGS+GYHT S AIPSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQNLKGDGSTQLQTSDSIVTTPVQNGSNGYHTISLAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

XP_022936562.1 replication protein A 32 kDa subunit A-like [Cucurbita moschata]6.3e-13288.93Show/hide
Query:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDAF
        MFSS+QFDS SGFTSSQTNDSSSAK+RE+PGLVP TVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVND F
Subjt:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDAF

Query:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQNLKGDGSTQLQTSDSIVTTPVQNGSNGYHTISLAIPSEQ
        DTKQM+EIQDGMY+RVNGHLK+FQSNKQIFAFSVRP+TNF+EITFHFIECIH+HLRNSKLQNL G GSTQ Q+SDSIV TP+QNGS+GY T S  +PSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQNLKGDGSTQLQTSDSIVTTPVQNGSNGYHTISLAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKK+CD+L+LDYLQLPSSVAKERGIHRDELSQQLKIPMEKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

XP_038897330.1 replication protein A 32 kDa subunit A-like [Benincasa hispida]4.2e-13692.99Show/hide
Query:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDAF
        MFS TQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFV+NGVDITNV IVGKVSEKAERNTDITFTVDDGTGTIGCKRWVND F
Subjt:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDAF

Query:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQNLKGDGSTQLQTSDSIVTTPVQNGSNGYHTISLAIPSEQ
        DTKQMEEIQDGMYVRVNGHLK+FQSNKQIFAFSVRPVTNF+EITFHFIECIHDHLRNSKLQNL GDG TQ Q+SDSIV TPVQNGS+G+ T S  IPSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQNLKGDGSTQLQTSDSIVTTPVQNGSNGYHTISLAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKK+CDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

TrEMBL top hitse value%identityAlignment
A0A0A0LEG7 Uncharacterized protein7.2e-14296.31Show/hide
Query:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDAF
        MFSSTQFDSASGFTSSQTNDSSSAKSRESPGL+PVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVND F
Subjt:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDAF

Query:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQNLKGDGSTQLQTSDSIVTTPVQNGSNGYHTISLAIPSEQ
        DT QMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNF+EITFHFIECIHDHLRNSKLQNLKG+GSTQLQTSDSIV TPVQNGSNGYHT S AIPSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQNLKGDGSTQLQTSDSIVTTPVQNGSNGYHTISLAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKKSCDELVLDYLQLPSSVAKERGIH+DELSQQLK+PMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

A0A1S3CR64 replication protein A 32 kDa subunit A-like1.2e-14196.68Show/hide
Query:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDAF
        MFSSTQFDS SGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVIN VDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVND F
Subjt:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDAF

Query:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQNLKGDGSTQLQTSDSIVTTPVQNGSNGYHTISLAIPSEQ
        DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNF+EITFHF+ECIHDHLRNSKLQNLKGDGSTQLQTSDSIV TPVQNGS+GYHT S AIPSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQNLKGDGSTQLQTSDSIVTTPVQNGSNGYHTISLAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

A0A6J1CUB8 replication protein A 32 kDa subunit A1.0e-11984.5Show/hide
Query:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDAF
        MFSS+QFDS SGFTSSQ  DS+SAKSRESPGLVPVTVKQISEA HSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVND F
Subjt:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDAF

Query:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQNLKGDGSTQLQTSDSIVTTPVQNGSNGYHTISLAIPSEQ
        DTKQM++IQDGMY+RVNGHLK+FQ N QIFAFSVRPVTN +EITFHFIECIHD+LRNSKLQ L G  STQ Q+SDS V   VQ+GS+GY T S  + S Q
Subjt:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQNLKGDGSTQLQTSDSIVTTPVQNGSNGYHTISLAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKK+ D+LVLDYLQLPSSVAKE+GIHRDELSQQLKIP+EKILDSIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

A0A6J1F8S8 replication protein A 32 kDa subunit A-like3.0e-13288.93Show/hide
Query:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDAF
        MFSS+QFDS SGFTSSQTNDSSSAK+RE+PGLVP TVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVND F
Subjt:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDAF

Query:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQNLKGDGSTQLQTSDSIVTTPVQNGSNGYHTISLAIPSEQ
        DTKQM+EIQDGMY+RVNGHLK+FQSNKQIFAFSVRP+TNF+EITFHFIECIH+HLRNSKLQNL G GSTQ Q+SDSIV TP+QNGS+GY T S  +PSEQ
Subjt:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQNLKGDGSTQLQTSDSIVTTPVQNGSNGYHTISLAIPSEQ

Query:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        HTVDVKK+CD+L+LDYLQLPSSVAKERGIHRDELSQQLKIPMEKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

A0A6J1IMU1 replication protein A 32 kDa subunit A-like1.4e-12987.55Show/hide
Query:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDAF
        MFSS+QFDS SGFT SQTNDSSSAK+RE+PGLVP TVKQISEASHSGEEKANF INGVDITNVTIVGKVSEKAERNTDITF VDDGTG IGCKRWVND F
Subjt:  MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDAF

Query:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQNLKGDGSTQLQTSDSIVTTPVQNGSNGYHTIS--LAIPS
        DTKQM+EIQDGMY+RVNGHLK+FQSNKQIFAFSVRP+TNF+EITFHFIECIH+HLRNSKLQNL G GSTQ Q+SDSIV TP+QNGS+GY T S    +PS
Subjt:  DTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQNLKGDGSTQLQTSDSIVTTPVQNGSNGYHTIS--LAIPS

Query:  EQHTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        EQHTVDVKK+CD+L+LDYLQLPSSVAKERGIHRDELSQQLKIPMEKIL+SIRSLEDEGLIYSTIDEFHFKSAA
Subjt:  EQHTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

SwissProt top hitse value%identityAlignment
Q5Z8L1 Replication protein A 32 kDa subunit C9.1e-2541.25Show/hide
Query:  SASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEA-----SHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDAFDTK
        SA+G  ++     S  +     G VP TV  IS +     +  G     F I+GV+ TNV ++G+V     R+TD+ FT+DD TG I   RW+ D  DT+
Subjt:  SASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEA-----SHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDAFDTK

Query:  QMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRN--SKLQ
            IQ+G+YV+V  +L  FQ+ KQ  A S+RP+ NFNE+  HFIEC+H HL +  SK+Q
Subjt:  QMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRN--SKLQ

Q6H7J5 Replication protein A 32 kDa subunit B4.8e-4235.58Show/hide
Query:  GFTSSQTNDSSSA---------KSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDAFDT
        GF  SQ  +++           KSR +  L+P+TVKQI +AS + ++K+NF +NG++++ V +VG++  K +R TD++FT+DDGTG +   RW ND+ DT
Subjt:  GFTSSQTNDSSSA---------KSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDAFDT

Query:  KQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQNLKGDGSTQLQTSDSIVTTPVQNGSNGYHTISLAIPSEQHT
        K+M +IQ+G YV VNG LK FQ  +Q+ A+SVR +TNFN++T HF+ C+H HL  ++ ++ + + +T   T +  +       +    T   +  S    
Subjt:  KQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQNLKGDGSTQLQTSDSIVTTPVQNGSNGYHTISLAIPSEQHT

Query:  VDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKS
             +  +LVL+    P+ +  + G+  D +S++L +P E +   I    D G +Y+TID+ H+KS
Subjt:  VDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKS

Q6K9U2 Replication protein A 32 kDa subunit A5.9e-4843.06Show/hide
Query:  FSSTQFDSASGFTSSQ---TNDSSSAKSRESPGLVPVTVKQISEASHS---GEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRW
        FS     S S FTSSQ    + ++ +KSR +   +P+TVKQISEA  S   GE+ A FV++GV+  NV +VG VS K ERNTD++FT+DDGTG +   RW
Subjt:  FSSTQFDSASGFTSSQ---TNDSSSAKSRESPGLVPVTVKQISEASHS---GEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRW

Query:  VNDAFDTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQ------NLKGDGSTQLQTSDSIVTTPVQNGSNGY
        VND  D+ +   +Q+GMYV V G LK  Q  K+  AF++RPVT++NE+T HFI+C+  HL N+K Q           GS+      S +TTP    SN  
Subjt:  VNDAFDTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQ------NLKGDGSTQLQTSDSIVTTPVQNGSNGY

Query:  HTISLAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSA
          +S+       T   K   +  VL+  + P++V  E G+H DE+ ++ ++P  KI  +I  L D G IYSTIDE H+KSA
Subjt:  HTISLAIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSA

Q8LFJ8 Replication protein A 32 kDa subunit B2.5e-4640.51Show/hide
Query:  SASGFTSSQT-----NDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDAFDTK
        +  GF  SQ        SSS K+R+   L+P+T+KQ+S AS +GE  +NF I+GVDI  V IVG++S    R T + F VDDGTG + C RW +   +T+
Subjt:  SASGFTSSQT-----NDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDAFDTK

Query:  QMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQ--NLKGDGST-QLQTSDSIVTTPVQNGSNGYHTISLAIPSEQ
        +ME ++ GMYVR++GHLK+FQ  + +  FSVRPVT+FNEI  HF EC++ H+ N+KL+  ++  D +T + Q   S + TP +    G        PS Q
Subjt:  QMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQ--NLKGDGST-QLQTSDSIVTTPVQNGSNGYHTISLAIPSEQ

Query:  ---HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
              D      + VL+YL  P  +  E G+H D ++++L+IP+ ++ +++  L ++G IYST+DE  FKS A
Subjt:  ---HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

Q9ZQ19 Replication protein A 32 kDa subunit A6.2e-6648.75Show/hide
Query:  MFSSTQFD-----SASGFTSSQ-----TNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFTVDDGTGT
        MFSS+QF+     S  GF SSQ      + SS+AK+R+  GLVPVTVKQI+E   S  EK+  VING+ +TNV++VG V +K E + T++ FT+DDGTG 
Subjt:  MFSSTQFD-----SASGFTSSQ-----TNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFTVDDGTGT

Query:  IGCKRWVNDAFDTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQNLKGDGSTQLQTSDSIVTTPVQNGSNGY
        I CKRWV++ FD ++ME ++DG YVR++GHLK FQ   Q+  FSVRP+ +FNE+TFH+IECIH + +NS+ Q  +    TQ       V T  Q GSN  
Subjt:  IGCKRWVNDAFDTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQNLKGDGSTQLQTSDSIVTTPVQNGSNGY

Query:  HTISL--AIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFK
            L   + S+ +  + +K+ D+++LDYL+ P+  A+++GIH DE++QQLKIP  K+   ++SLE +GLIYSTIDE+HFK
Subjt:  HTISL--AIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFK

Arabidopsis top hitse value%identityAlignment
AT2G24490.1 replicon protein A24.4e-6748.75Show/hide
Query:  MFSSTQFD-----SASGFTSSQ-----TNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFTVDDGTGT
        MFSS+QF+     S  GF SSQ      + SS+AK+R+  GLVPVTVKQI+E   S  EK+  VING+ +TNV++VG V +K E + T++ FT+DDGTG 
Subjt:  MFSSTQFD-----SASGFTSSQ-----TNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFTVDDGTGT

Query:  IGCKRWVNDAFDTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQNLKGDGSTQLQTSDSIVTTPVQNGSNGY
        I CKRWV++ FD ++ME ++DG YVR++GHLK FQ   Q+  FSVRP+ +FNE+TFH+IECIH + +NS+ Q  +    TQ       V T  Q GSN  
Subjt:  IGCKRWVNDAFDTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQNLKGDGSTQLQTSDSIVTTPVQNGSNGY

Query:  HTISL--AIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFK
            L   + S+ +  + +K+ D+++LDYL+ P+  A+++GIH DE++QQLKIP  K+   ++SLE +GLIYSTIDE+HFK
Subjt:  HTISL--AIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFK

AT2G24490.2 replicon protein A24.4e-6748.75Show/hide
Query:  MFSSTQFD-----SASGFTSSQ-----TNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFTVDDGTGT
        MFSS+QF+     S  GF SSQ      + SS+AK+R+  GLVPVTVKQI+E   S  EK+  VING+ +TNV++VG V +K E + T++ FT+DDGTG 
Subjt:  MFSSTQFD-----SASGFTSSQ-----TNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAE-RNTDITFTVDDGTGT

Query:  IGCKRWVNDAFDTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQNLKGDGSTQLQTSDSIVTTPVQNGSNGY
        I CKRWV++ FD ++ME ++DG YVR++GHLK FQ   Q+  FSVRP+ +FNE+TFH+IECIH + +NS+ Q  +    TQ       V T  Q GSN  
Subjt:  IGCKRWVNDAFDTKQMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQNLKGDGSTQLQTSDSIVTTPVQNGSNGY

Query:  HTISL--AIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFK
            L   + S+ +  + +K+ D+++LDYL+ P+  A+++GIH DE++QQLKIP  K+   ++SLE +GLIYSTIDE+HFK
Subjt:  HTISL--AIPSEQHTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFK

AT3G02920.1 Replication protein A, subunit RPA321.8e-4740.51Show/hide
Query:  SASGFTSSQT-----NDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDAFDTK
        +  GF  SQ        SSS K+R+   L+P+T+KQ+S AS +GE  +NF I+GVDI  V IVG++S    R T + F VDDGTG + C RW +   +T+
Subjt:  SASGFTSSQT-----NDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDAFDTK

Query:  QMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQ--NLKGDGST-QLQTSDSIVTTPVQNGSNGYHTISLAIPSEQ
        +ME ++ GMYVR++GHLK+FQ  + +  FSVRPVT+FNEI  HF EC++ H+ N+KL+  ++  D +T + Q   S + TP +    G        PS Q
Subjt:  QMEEIQDGMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQ--NLKGDGST-QLQTSDSIVTTPVQNGSNGYHTISLAIPSEQ

Query:  ---HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
              D      + VL+YL  P  +  E G+H D ++++L+IP+ ++ +++  L ++G IYST+DE  FKS A
Subjt:  ---HTVDVKKSCDELVLDYLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA

AT3G02920.2 Replication protein A, subunit RPA323.0e-4741.02Show/hide
Query:  SSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDAFDTKQMEEIQDGMYVRVNGHLK
        SS ++R+   L+P+T+KQ+S AS +GE  +NF I+GVDI  V IVG++S    R T + F VDDGTG + C RW +   +T++ME ++ GMYVR++GHLK
Subjt:  SSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDAFDTKQMEEIQDGMYVRVNGHLK

Query:  MFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQ--NLKGDGST-QLQTSDSIVTTPVQNGSNGYHTISLAIPSEQ---HTVDVKKSCDELVLD
        +FQ  + +  FSVRPVT+FNEI  HF EC++ H+ N+KL+  ++  D +T + Q   S + TP +    G        PS Q      D      + VL+
Subjt:  MFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQ--NLKGDGST-QLQTSDSIVTTPVQNGSNGYHTISLAIPSEQ---HTVDVKKSCDELVLD

Query:  YLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA
        YL  P  +  E G+H D ++++L+IP+ ++ +++  L ++G IYST+DE  FKS A
Subjt:  YLQLPSSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTCTCCAGTACCCAGTTTGATTCCGCCAGCGGATTTACGTCTTCTCAGACCAATGACTCCTCTTCAGCGAAGAGTCGAGAATCTCCGGGCTTGGTTCCGGTAACTGT
GAAACAGATCAGTGAAGCTTCACATTCTGGCGAAGAGAAGGCCAACTTTGTAATCAACGGCGTTGATATTACAAATGTTACAATCGTTGGGAAGGTCTCTGAGAAAGCTG
AAAGGAATACGGACATCACATTCACTGTAGACGATGGAACAGGAACAATTGGTTGCAAAAGATGGGTAAACGACGCTTTTGACACCAAGCAAATGGAGGAAATACAAGAT
GGAATGTATGTTCGGGTGAATGGGCATTTGAAAATGTTCCAAAGCAACAAGCAAATATTTGCATTCTCCGTAAGGCCTGTTACAAACTTTAATGAAATTACCTTCCACTT
TATTGAATGCATACATGATCACTTGCGGAATTCCAAGTTACAGAATCTCAAAGGCGATGGATCAACACAGCTCCAAACCTCAGATTCAATTGTGACGACTCCAGTGCAGA
ATGGCTCGAATGGATATCATACAATATCTTTAGCAATACCATCTGAGCAGCACACTGTTGATGTTAAAAAGAGCTGTGATGAATTGGTTCTTGACTATCTGCAGCTGCCC
TCCAGCGTTGCAAAAGAAAGAGGGATACACAGAGATGAACTTTCCCAACAACTGAAAATTCCAATGGAGAAAATACTGGATTCCATAAGGTCTCTTGAAGATGAAGGTTT
GATATATTCCACCATAGATGAGTTTCATTTCAAGTCTGCTGCATAG
mRNA sequenceShow/hide mRNA sequence
GTTCATATTTGTTCCGTAATTCTCTTCCATTTCTCCATTTTTGATTGTTCATCGCCTTAGTACTCACATTTGAAGAATGTTCTCCAGTACCCAGTTTGATTCCGCCAGCG
GATTTACGTCTTCTCAGACCAATGACTCCTCTTCAGCGAAGAGTCGAGAATCTCCGGGCTTGGTTCCGGTAACTGTGAAACAGATCAGTGAAGCTTCACATTCTGGCGAA
GAGAAGGCCAACTTTGTAATCAACGGCGTTGATATTACAAATGTTACAATCGTTGGGAAGGTCTCTGAGAAAGCTGAAAGGAATACGGACATCACATTCACTGTAGACGA
TGGAACAGGAACAATTGGTTGCAAAAGATGGGTAAACGACGCTTTTGACACCAAGCAAATGGAGGAAATACAAGATGGAATGTATGTTCGGGTGAATGGGCATTTGAAAA
TGTTCCAAAGCAACAAGCAAATATTTGCATTCTCCGTAAGGCCTGTTACAAACTTTAATGAAATTACCTTCCACTTTATTGAATGCATACATGATCACTTGCGGAATTCC
AAGTTACAGAATCTCAAAGGCGATGGATCAACACAGCTCCAAACCTCAGATTCAATTGTGACGACTCCAGTGCAGAATGGCTCGAATGGATATCATACAATATCTTTAGC
AATACCATCTGAGCAGCACACTGTTGATGTTAAAAAGAGCTGTGATGAATTGGTTCTTGACTATCTGCAGCTGCCCTCCAGCGTTGCAAAAGAAAGAGGGATACACAGAG
ATGAACTTTCCCAACAACTGAAAATTCCAATGGAGAAAATACTGGATTCCATAAGGTCTCTTGAAGATGAAGGTTTGATATATTCCACCATAGATGAGTTTCATTTCAAG
TCTGCTGCATAGAATTAATCATGACTTTATAGTTTTTTTGTTTTTTTTTTTGTTTTTGGTTGCTATGCTTTAGATGTGGTTTAGACAGACATGTACTGTTTGCTTGAATT
GAAGCATATCTGTTTTACTGGCTTGTTCAATGTATAGGTGTTTTGAAGCTTGTTTTCCCTAATTCCAATACTAGATTAAGCCTTCTCTTAGGGGTGTTTTTCCTAATTCC
AATACTAGATTAAG
Protein sequenceShow/hide protein sequence
MFSSTQFDSASGFTSSQTNDSSSAKSRESPGLVPVTVKQISEASHSGEEKANFVINGVDITNVTIVGKVSEKAERNTDITFTVDDGTGTIGCKRWVNDAFDTKQMEEIQD
GMYVRVNGHLKMFQSNKQIFAFSVRPVTNFNEITFHFIECIHDHLRNSKLQNLKGDGSTQLQTSDSIVTTPVQNGSNGYHTISLAIPSEQHTVDVKKSCDELVLDYLQLP
SSVAKERGIHRDELSQQLKIPMEKILDSIRSLEDEGLIYSTIDEFHFKSAA