; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0004243 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004243
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr11:23010451..23014964
RNA-Seq ExpressionPI0004243
SyntenyPI0004243
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0031678.1 retrotransposon protein [Cucumis melo var. makuwa]4.0e-1183.33Show/hide
Query:  KSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGS
        +SHP AKGLLHKSFPYYD+LSYVFG D ATGAH+ETFAD GS
Subjt:  KSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGS

KAA0043158.1 retrotransposon protein [Cucumis melo var. makuwa]3.1e-1161.43Show/hide
Query:  MKSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGSKCQTVLMKMFHLMIYMMKTSRRCIAKE
        ++SHP AKGLL+KSFPYYD L+YVFGRDRATG  AETFADVGS         F  M    +TSR C A+E
Subjt:  MKSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGSKCQTVLMKMFHLMIYMMKTSRRCIAKE

KAA0050293.1 retrotransposon protein [Cucumis melo var. makuwa]5.2e-1181.4Show/hide
Query:  MKSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGS
        ++SHPEAKGLL+K FPYYD L+YVFGRDRATG  AETFADVGS
Subjt:  MKSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGS

KAA0062747.1 retrotransposon protein [Cucumis melo var. makuwa]1.4e-1181.4Show/hide
Query:  MKSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGS
        +KSHP  KGLLHKSFPYYD+LSYVFG+DRATGA +ETF DVGS
Subjt:  MKSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGS

XP_008441954.1 PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo]2.3e-1181.4Show/hide
Query:  MKSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGS
        +KSHP AKGLLHKSFPYYD+LSYVFG+DRATGA +ETF +VGS
Subjt:  MKSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGS

TrEMBL top hitse value%identityAlignment
A0A1S3B4L3 uncharacterized protein LOC1034859531.1e-1181.4Show/hide
Query:  MKSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGS
        +KSHP AKGLLHKSFPYYD+LSYVFG+DRATGA +ETF +VGS
Subjt:  MKSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGS

A0A5A7TK19 Retrotransposon protein1.5e-1161.43Show/hide
Query:  MKSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGSKCQTVLMKMFHLMIYMMKTSRRCIAKE
        ++SHP AKGLL+KSFPYYD L+YVFGRDRATG  AETFADVGS         F  M    +TSR C A+E
Subjt:  MKSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGSKCQTVLMKMFHLMIYMMKTSRRCIAKE

A0A5A7U0H7 Retrotransposon protein1.1e-1181.4Show/hide
Query:  MKSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGS
        +KSHP AKGLLHKSFPYYD+LSYVFG+DRATGA +ETF +VGS
Subjt:  MKSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGS

A0A5D3BZU3 Retrotransposon protein1.9e-1183.33Show/hide
Query:  KSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGS
        +SHP AKGLLHKSFPYYD+LSYVFG D ATGAH+ETFAD GS
Subjt:  KSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGS

A0A5D3DG22 Retrotransposon protein6.6e-1281.4Show/hide
Query:  MKSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGS
        +KSHP  KGLLHKSFPYYD+LSYVFG+DRATGA +ETF DVGS
Subjt:  MKSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGAGTCATCCTGAGGCCAAAGGACTTTTACACAAATCATTTCCATATTATGACAATCTGTCGTATGTGTTCGGTAGAGATCGGGCAACAGGAGCACATGCGGAGAC
CTTTGCTGACGTGGGATCTAAATGCCAAACAGTTTTAATGAAGATGTTCCACTTGATGATCTACATGATGAAGACATCCCGACGATGTATAGCCAAAGAAAGAAAGGTGA
TCTGTTCTATCCTGGGAGACAATTACTCTCGAAACTCTGGCACTAGGGAACATGTGGAGGTCGATCAAGTGAAGGACGAAATTGTTCAAGTGGGAGTAAGAGGAAACGGG
GTGGCCAACATAATGAAACAGTGGAGCTCGCCGTTACGGTCTACATCTCCATCTCAGATTGTCAGCTCTTCTCACACCATCTTCACACCTCAGTGTTTGGCCTACCTCCT
TAGTCGAGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGAGTCATCCTGAGGCCAAAGGACTTTTACACAAATCATTTCCATATTATGACAATCTGTCGTATGTGTTCGGTAGAGATCGGGCAACAGGAGCACATGCGGAGAC
CTTTGCTGACGTGGGATCTAAATGCCAAACAGTTTTAATGAAGATGTTCCACTTGATGATCTACATGATGAAGACATCCCGACGATGTATAGCCAAAGAAAGAAAGGTGA
TCTGTTCTATCCTGGGAGACAATTACTCTCGAAACTCTGGCACTAGGGAACATGTGGAGGTCGATCAAGTGAAGGACGAAATTGTTCAAGTGGGAGTAAGAGGAAACGGG
GTGGCCAACATAATGAAACAGTGGAGCTCGCCGTTACGGTCTACATCTCCATCTCAGATTGTCAGCTCTTCTCACACCATCTTCACACCTCAGTGTTTGGCCTACCTCCT
TAGTCGAGGTTGA
Protein sequenceShow/hide protein sequence
MKSHPEAKGLLHKSFPYYDNLSYVFGRDRATGAHAETFADVGSKCQTVLMKMFHLMIYMMKTSRRCIAKERKVICSILGDNYSRNSGTREHVEVDQVKDEIVQVGVRGNG
VANIMKQWSSPLRSTSPSQIVSSSHTIFTPQCLAYLLSRG