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PI0004248 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004248
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionPentatricopeptide repeat-containing protein
Genome locationchr12:10497666..10500814
RNA-Seq ExpressionPI0004248
SyntenyPI0004248
Gene Ontology termsGO:0005515 - protein binding (molecular function)
InterPro domainsIPR002885 - Pentatricopeptide repeat
IPR011990 - Tetratricopeptide-like helical domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
CAD1820551.1 unnamed protein product [Ananas comosus var. bracteatus]8.8e-1750.5Show/hide
Query:  PSTDIYTMLINVFGKVSL-----------------------------NSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLHEGDQ---EKLK
        PS + YT++IN++GK  L                              SRAGFPYG++EIFSLMQHMGC+PDRASYNI+VDA+GRAGLHE  Q   E+LK
Subjt:  PSTDIYTMLINVFGKVSL-----------------------------NSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLHEGDQ---EKLK

Query:  R
        R
Subjt:  R

DAD43917.1 TPA_asm: hypothetical protein HUJ06_002147 [Nelumbo nucifera]2.6e-1665.75Show/hide
Query:  QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLHEGDQ---EKLKR
        +P    Y  L+  +      SRAGFPYGA EIFSLMQHMGC+PDRASYNIMVDAYGRAGLHE  Q   E+LKR
Subjt:  QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLHEGDQ---EKLKR

KAE8653657.1 hypothetical protein Csa_007366 [Cucumis sativus]7.2e-2791.18Show/hide
Query:  MAAKGQPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLHEG
        MAAK QPSTDIYTMLINV+GKVSLNS AGFP+GATEIFSLMQ+MGC PDRASYNIMVDAYGRAGLHEG
Subjt:  MAAKGQPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLHEG

KAF9587603.1 hypothetical protein IFM89_004435 [Coptis chinensis]2.6e-1664.38Show/hide
Query:  QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLHEGDQ---EKLKR
        +P   +Y  L+  +      SRAGFPYGA EIFSLMQHMGC+PDRASYNIMVDAYGRAGLHE  +   E+LKR
Subjt:  QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLHEGDQ---EKLKR

XP_010276204.1 PREDICTED: pentatricopeptide repeat-containing protein At2g35130 [Nelumbo nucifera]2.6e-1665.75Show/hide
Query:  QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLHEGDQ---EKLKR
        +P    Y  L+  +      SRAGFPYGA EIFSLMQHMGC+PDRASYNIMVDAYGRAGLHE  Q   E+LKR
Subjt:  QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLHEGDQ---EKLKR

TrEMBL top hitse value%identityAlignment
A0A0A0LYJ9 Uncharacterized protein4.2e-4188.3Show/hide
Query:  MAAKGQPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLHEGDQEKLKRWVEAFDCEVGSLPFSYLEL
        MAAK QPSTDIYTMLINV+GKVSLNS AGFP+GATEIFSLMQ+MGC PDRASYNIMVDAYGRAGLHEGDQ+KLK+W EAFDCEVGSLP SYL L
Subjt:  MAAKGQPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLHEGDQEKLKRWVEAFDCEVGSLPFSYLEL

A0A1U8B5N5 pentatricopeptide repeat-containing protein At2g351301.2e-1665.75Show/hide
Query:  QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLHEGDQ---EKLKR
        +P    Y  L+  +      SRAGFPYGA EIFSLMQHMGC+PDRASYNIMVDAYGRAGLHE  Q   E+LKR
Subjt:  QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLHEGDQ---EKLKR

A0A2P2L2Y1 Uncharacterized protein1.5e-1764.38Show/hide
Query:  QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLHEGDQEKLKRWVE
        +P    Y  L+  +G      RAGFPYG+ EIFSLMQHMGC+PDRASYNIMVDAYGRAGLH+G  + LKRW E
Subjt:  QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLHEGDQEKLKRWVE

A0A6P6FTH9 pentatricopeptide repeat-containing protein At2g35130 isoform X21.6e-1653.76Show/hide
Query:  KGQPSTDIYTMLINVFGKVSL------------------NSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLHEGDQ---EKLKR
        K +P+   YT L+N F +  L                  + RAGFPYGA EIFSLMQHMGC+PDRASYNI+VDAYGRAGLHE  Q   E++KR
Subjt:  KGQPSTDIYTMLINVFGKVSL------------------NSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLHEGDQ---EKLKR

A0A6V7NPK6 PPR_long domain-containing protein4.3e-1750.5Show/hide
Query:  PSTDIYTMLINVFGKVSL-----------------------------NSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLHEGDQ---EKLK
        PS + YT++IN++GK  L                              SRAGFPYG++EIFSLMQHMGC+PDRASYNI+VDA+GRAGLHE  Q   E+LK
Subjt:  PSTDIYTMLINVFGKVSL-----------------------------NSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLHEGDQ---EKLK

Query:  R
        R
Subjt:  R

SwissProt top hitse value%identityAlignment
O82178 Pentatricopeptide repeat-containing protein At2g351306.3e-1861.64Show/hide
Query:  QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLH---EGDQEKLKR
        +P   +Y  L+  +      SRAG+PYGA EIFSLMQHMGC+PDRASYNIMVDAYGRAGLH   E   E++KR
Subjt:  QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLH---EGDQEKLKR

Q10PZ4 Pentatricopeptide repeat-containing protein ATP4 homolog, chloroplastic3.1e-0436.67Show/hide
Query:  VSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAG-----LHEGDQEKLKRW
        +S     G P  A E F  M   GC PD  +Y+ ++DAYGRAG     L   D+ + ++W
Subjt:  VSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAG-----LHEGDQEKLKRW

Q8GWE0 Pentatricopeptide repeat-containing protein At4g16390, chloroplastic6.8e-0436.67Show/hide
Query:  VSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAG-----LHEGDQEKLKRW
        +S   + G P  A E F  M   GC+PD  +   M+DAYGRAG     L   D+ + ++W
Subjt:  VSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAG-----LHEGDQEKLKRW

Q8GYP6 Pentatricopeptide repeat-containing protein At1g189001.8e-0437.29Show/hide
Query:  QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAG
        QP+T  Y  LI+ +G      RA +   A  +F+ MQ  GC PDR +Y  ++D + +AG
Subjt:  QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAG

Q9SSF9 Pentatricopeptide repeat-containing protein At1g747503.6e-0532.43Show/hide
Query:  QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLHEGDQEKLKRWVEA
        +P+T  Y  LI+ +G      RA +   A  +F+ MQ  GC+PDR +Y  ++D + +AG  +   +  +R  EA
Subjt:  QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLHEGDQEKLKRWVEA

Arabidopsis top hitse value%identityAlignment
AT1G18900.1 Pentatricopeptide repeat (PPR) superfamily protein1.3e-0537.29Show/hide
Query:  QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAG
        QP+T  Y  LI+ +G      RA +   A  +F+ MQ  GC PDR +Y  ++D + +AG
Subjt:  QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAG

AT1G18900.2 Pentatricopeptide repeat (PPR) superfamily protein1.3e-0537.29Show/hide
Query:  QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAG
        QP+T  Y  LI+ +G      RA +   A  +F+ MQ  GC PDR +Y  ++D + +AG
Subjt:  QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAG

AT1G74750.1 Pentatricopeptide repeat (PPR) superfamily protein2.6e-0632.43Show/hide
Query:  QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLHEGDQEKLKRWVEA
        +P+T  Y  LI+ +G      RA +   A  +F+ MQ  GC+PDR +Y  ++D + +AG  +   +  +R  EA
Subjt:  QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLHEGDQEKLKRWVEA

AT2G35130.1 Tetratricopeptide repeat (TPR)-like superfamily protein4.5e-1961.64Show/hide
Query:  QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLH---EGDQEKLKR
        +P   +Y  L+  +      SRAG+PYGA EIFSLMQHMGC+PDRASYNIMVDAYGRAGLH   E   E++KR
Subjt:  QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLH---EGDQEKLKR

AT2G35130.2 Tetratricopeptide repeat (TPR)-like superfamily protein4.5e-1961.64Show/hide
Query:  QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLH---EGDQEKLKR
        +P   +Y  L+  +      SRAG+PYGA EIFSLMQHMGC+PDRASYNIMVDAYGRAGLH   E   E++KR
Subjt:  QPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLH---EGDQEKLKR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTGCCAAGGGTCAACCCTCTACAGATATTTACACAATGTTAATAAACGTGTTTGGAAAGGTGAGCCTAAACAGTCGTGCTGGTTTTCCATATGGAGCTACAGAAAT
ATTTTCACTCATGCAACACATGGGATGTGATCCAGATAGAGCTTCATACAACATCATGGTGGATGCATATGGAAGAGCTGGCCTTCACGAAGGTGATCAAGAAAAGCTCA
AGAGGTGGGTGGAGGCATTTGATTGTGAGGTGGGTTCTCTCCCTTTTTCTTACCTTGAGCTTCCGTTGGGTGGTAACTTGAGAGCTACAACATTCTGGAATCCAATTTGT
GAGAAGATTCAAAAGAGGCTTTTAAGGGTTTCTCTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCTGCCAAGGGTCAACCCTCTACAGATATTTACACAATGTTAATAAACGTGTTTGGAAAGGTGAGCCTAAACAGTCGTGCTGGTTTTCCATATGGAGCTACAGAAAT
ATTTTCACTCATGCAACACATGGGATGTGATCCAGATAGAGCTTCATACAACATCATGGTGGATGCATATGGAAGAGCTGGCCTTCACGAAGGTGATCAAGAAAAGCTCA
AGAGGTGGGTGGAGGCATTTGATTGTGAGGTGGGTTCTCTCCCTTTTTCTTACCTTGAGCTTCCGTTGGGTGGTAACTTGAGAGCTACAACATTCTGGAATCCAATTTGT
GAGAAGATTCAAAAGAGGCTTTTAAGGGTTTCTCTCTAA
Protein sequenceShow/hide protein sequence
MAAKGQPSTDIYTMLINVFGKVSLNSRAGFPYGATEIFSLMQHMGCDPDRASYNIMVDAYGRAGLHEGDQEKLKRWVEAFDCEVGSLPFSYLELPLGGNLRATTFWNPIC
EKIQKRLLRVSL