; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0004252 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004252
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr03:9834601..9835437
RNA-Seq ExpressionPI0004252
SyntenyPI0004252
Gene Ontology termsGO:0071897 - DNA biosynthetic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0034061 - DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036947.1 uncharacterized protein E6C27_scaffold86G00270 [Cucumis melo var. makuwa]2.7e-10481.28Show/hide
Query:  MEKKSSESFKEYVQRWRDKAAEVQPPLTDKEMTSMFMNTLRAPFYDRMIGNATTNFSDIIVIGERIEYGIKYGRIVEAPTEYGGIKRGAASKKKEGE---
        MEKKSSESFKEY QRWRD  AEVQPPLTDKEMTSMF+NTLRAPFY+RMIGNA+TNFSDIIVIGERIEYGIK+GR+ EA TEYGGIK+G  SKKKEGE   
Subjt:  MEKKSSESFKEYVQRWRDKAAEVQPPLTDKEMTSMFMNTLRAPFYDRMIGNATTNFSDIIVIGERIEYGIKYGRIVEAPTEYGGIKRGAASKKKEGE---

Query:  ----------PVNSNSPRPFAQGQGSKANSDTWRLDPIPMTYTELLPQLIQNRQLAPIPMIPIQPPYPKWYDPNARCDYHAGGAGHSTENCLALKRKVQS
                  PVNSNSPRPF QGQGSK N DTW+ DPIPMTYTELLPQLIQNRQ+A IPMIPIQPPYPKWYD NARCDYHAGG GHSTENCLALKR VQS
Subjt:  ----------PVNSNSPRPFAQGQGSKANSDTWRLDPIPMTYTELLPQLIQNRQLAPIPMIPIQPPYPKWYDPNARCDYHAGGAGHSTENCLALKRKVQS

Query:  LINAGWLSFKKASEKPDVNNNPLLNHENSKVNVVD
        LINAGWLSFKK+ +KP+VN NPL +HEN KVNVVD
Subjt:  LINAGWLSFKKASEKPDVNNNPLLNHENSKVNVVD

XP_031737539.1 uncharacterized protein LOC116402431 [Cucumis sativus]1.1e-10270.4Show/hide
Query:  MEKKSSESFKEYVQRWRDKAAEVQPPLTDKEMTSMFMNTLRAPFYDRMIGNATTNFSDIIVIGERIEYGIKYGRIVEAPTEYGGIKRGAASKKKEGEP--
        MEKKSSESFKEY QRWRD AAEVQPPLTDKEMT MFMNTLRAPFYDRMIGNATTNFSDIIVIGERIEYGIK+GR++E   EYGG+K+GA  KKKEGE   
Subjt:  MEKKSSESFKEYVQRWRDKAAEVQPPLTDKEMTSMFMNTLRAPFYDRMIGNATTNFSDIIVIGERIEYGIKYGRIVEAPTEYGGIKRGAASKKKEGEP--

Query:  -------------------------------------------------VNSNSPRPFAQGQGSKANSDTWRLDPIPMTYTELLPQLIQNRQLAPIPMIP
                                                         VNSN  RPF QGQGSK NS+T+R DPIPMTYTELLPQL+ NRQLAPIP+ P
Subjt:  -------------------------------------------------VNSNSPRPFAQGQGSKANSDTWRLDPIPMTYTELLPQLIQNRQLAPIPMIP

Query:  IQPPYPKWYDPNARCDYHAGGAGHSTENCLALKRKVQSLINAGWLSFKKASEKPDVNNNPLLNHENSKVNVVDCFDG
        IQPPYPKWYDPNARCDYHAGG GHSTENCLALKRKVQSLINAGWLSFKKA EKPDVNNNPL NHENSKVN +DCF G
Subjt:  IQPPYPKWYDPNARCDYHAGGAGHSTENCLALKRKVQSLINAGWLSFKKASEKPDVNNNPLLNHENSKVNVVDCFDG

XP_031737550.1 uncharacterized protein LOC116402440 [Cucumis sativus]3.0e-10370.76Show/hide
Query:  MEKKSSESFKEYVQRWRDKAAEVQPPLTDKEMTSMFMNTLRAPFYDRMIGNATTNFSDIIVIGERIEYGIKYGRIVEAPTEYGGIKRGAASKKKEGEP--
        MEKKSSESFKEY QRWRD AAEVQPPLTDKEMT MFMNTLRAPFYDRMIGNATTNFSDIIVIGERIEYGIK+GR++E   EYGG+K+GA  KKKEGE   
Subjt:  MEKKSSESFKEYVQRWRDKAAEVQPPLTDKEMTSMFMNTLRAPFYDRMIGNATTNFSDIIVIGERIEYGIKYGRIVEAPTEYGGIKRGAASKKKEGEP--

Query:  -------------------------------------------------VNSNSPRPFAQGQGSKANSDTWRLDPIPMTYTELLPQLIQNRQLAPIPMIP
                                                         VNSN  RPF QGQGSK NS+T+R DPIPMTYTELLPQL+QNRQLAPIP+ P
Subjt:  -------------------------------------------------VNSNSPRPFAQGQGSKANSDTWRLDPIPMTYTELLPQLIQNRQLAPIPMIP

Query:  IQPPYPKWYDPNARCDYHAGGAGHSTENCLALKRKVQSLINAGWLSFKKASEKPDVNNNPLLNHENSKVNVVDCFDG
        IQPPYPKWYDPNARCDYHAGG GHSTENCLALKRKVQSLINAGWLSFKKA EKPDVNNNPL NHENSKVN +DCF G
Subjt:  IQPPYPKWYDPNARCDYHAGGAGHSTENCLALKRKVQSLINAGWLSFKKASEKPDVNNNPLLNHENSKVNVVDCFDG

XP_031738551.1 LOW QUALITY PROTEIN: uncharacterized protein LOC101203611 [Cucumis sativus]1.1e-10270.4Show/hide
Query:  MEKKSSESFKEYVQRWRDKAAEVQPPLTDKEMTSMFMNTLRAPFYDRMIGNATTNFSDIIVIGERIEYGIKYGRIVEAPTEYGGIKRGAASKKKEGEP--
        MEKKSSESFKEY QRWRD AAEVQPPLTDKEMT MFMNTLRAPFYDRMIGNATTNFSDIIVIGERIEYGIK+GR++E   EYGG+K+GA  KKKEGE   
Subjt:  MEKKSSESFKEYVQRWRDKAAEVQPPLTDKEMTSMFMNTLRAPFYDRMIGNATTNFSDIIVIGERIEYGIKYGRIVEAPTEYGGIKRGAASKKKEGEP--

Query:  -------------------------------------------------VNSNSPRPFAQGQGSKANSDTWRLDPIPMTYTELLPQLIQNRQLAPIPMIP
                                                         VNSN  RPF QGQGSK NS+T+R DPIPMTYTELLPQL+ NRQLAPIP+ P
Subjt:  -------------------------------------------------VNSNSPRPFAQGQGSKANSDTWRLDPIPMTYTELLPQLIQNRQLAPIPMIP

Query:  IQPPYPKWYDPNARCDYHAGGAGHSTENCLALKRKVQSLINAGWLSFKKASEKPDVNNNPLLNHENSKVNVVDCFDG
        IQPPYPKWYDPNARCDYHAGG GHSTENCLALKRKVQSLINAGWLSFKKA EKPDVNNNPL NHENSKVN +DCF G
Subjt:  IQPPYPKWYDPNARCDYHAGGAGHSTENCLALKRKVQSLINAGWLSFKKASEKPDVNNNPLLNHENSKVNVVDCFDG

XP_031741698.1 uncharacterized protein LOC116403895 [Cucumis sativus]1.1e-10270.4Show/hide
Query:  MEKKSSESFKEYVQRWRDKAAEVQPPLTDKEMTSMFMNTLRAPFYDRMIGNATTNFSDIIVIGERIEYGIKYGRIVEAPTEYGGIKRGAASKKKEGEP--
        MEKKSSESFKEY QRWRD AAEVQPPLTDKEMT MFMNTLRAPFYDRMIGNATTNFSDIIVIGERIEYGIK+GR++E   EYGG+K+GA  KKKEGE   
Subjt:  MEKKSSESFKEYVQRWRDKAAEVQPPLTDKEMTSMFMNTLRAPFYDRMIGNATTNFSDIIVIGERIEYGIKYGRIVEAPTEYGGIKRGAASKKKEGEP--

Query:  -------------------------------------------------VNSNSPRPFAQGQGSKANSDTWRLDPIPMTYTELLPQLIQNRQLAPIPMIP
                                                         VNSN  RPF QGQGSK NS+T+R DPIPMTYTELLPQL+ NRQLAPIP+ P
Subjt:  -------------------------------------------------VNSNSPRPFAQGQGSKANSDTWRLDPIPMTYTELLPQLIQNRQLAPIPMIP

Query:  IQPPYPKWYDPNARCDYHAGGAGHSTENCLALKRKVQSLINAGWLSFKKASEKPDVNNNPLLNHENSKVNVVDCFDG
        IQPPYPKWYDPNARCDYHAGG GHSTENCLALKRKVQSLINAGWLSFKKA EKPDVNNNPL NHENSKVN +DCF G
Subjt:  IQPPYPKWYDPNARCDYHAGGAGHSTENCLALKRKVQSLINAGWLSFKKASEKPDVNNNPLLNHENSKVNVVDCFDG

TrEMBL top hitse value%identityAlignment
A0A5A7T0H8 Uncharacterized protein2.0e-10070.7Show/hide
Query:  MEKKSSESFKEYVQRWRDKAAEVQPPLTDKEMTSMFMNTLRAPFYDRMIGNATTNFSDIIVIGERIEYGIKYGRIVEAPTEYGGIKRGAASKKKEGE---
        +EKKSSESFKEY QRWRD  AEVQPPLTDKEMTSMFMNTLRAPFY+RMIGNA+TNFSDIIVIGERIEYGIK+GR+ EA TEYGGIK+G  SKKKEGE   
Subjt:  MEKKSSESFKEYVQRWRDKAAEVQPPLTDKEMTSMFMNTLRAPFYDRMIGNATTNFSDIIVIGERIEYGIKYGRIVEAPTEYGGIKRGAASKKKEGE---

Query:  ------------------------------------------------PVNSNSPRPFAQGQGSKANSDTWRLDPIPMTYTELLPQLIQNRQLAPIPMIP
                                                        PVNSNSPRPF QGQGSK NSDTWR DPIPMTYTELLPQLIQNRQLA IPMIP
Subjt:  ------------------------------------------------PVNSNSPRPFAQGQGSKANSDTWRLDPIPMTYTELLPQLIQNRQLAPIPMIP

Query:  IQPPYPKWYDPNARCDYHAGGAGHSTENCLALKRKVQSLINAGWLSFKKASEKPDVNNNPLLNHENSKVNVVD
        IQPPYPKWYD NARCDYHAGG GHSTENCLALKR VQSLINAGWLSFKK+ EK +V  NPL +HEN KVNVVD
Subjt:  IQPPYPKWYDPNARCDYHAGGAGHSTENCLALKRKVQSLINAGWLSFKKASEKPDVNNNPLLNHENSKVNVVD

A0A5A7T0R1 Uncharacterized protein3.4e-10071.06Show/hide
Query:  MEKKSSESFKEYVQRWRDKAAEVQPPLTDKEMTSMFMNTLRAPFYDRMIGNATTNFSDIIVIGERIEYGIKYGRIVEAPTEYGGIKRGAASKKKEGE---
        MEKKSSESFKEY QRWRD AAEVQPPLTDKEMTSMFMNTLRAPFY+RMIGNA+TNFSDIIVIGERIEYGIK+GR+ EA TEYGGIK+G  SKKKEGE   
Subjt:  MEKKSSESFKEYVQRWRDKAAEVQPPLTDKEMTSMFMNTLRAPFYDRMIGNATTNFSDIIVIGERIEYGIKYGRIVEAPTEYGGIKRGAASKKKEGE---

Query:  ------------------------------------------------PVNSNSPRPFAQGQGSKANSDTWRLDPIPMTYTELLPQLIQNRQLAPIPMIP
                                                        PVNSNSPRPF QGQGSK NSDTWR DPIPMTYTELLPQLIQNRQLA IPMIP
Subjt:  ------------------------------------------------PVNSNSPRPFAQGQGSKANSDTWRLDPIPMTYTELLPQLIQNRQLAPIPMIP

Query:  IQPPYPKWYDPNARCDYHAGGAGHSTENCLALKRKVQSLINAGWLSFKKASEKPDVNNNPLLNHENSKVNVVD
        IQPPYPKWYD NAR DYHAGG GHSTENCLALKR VQSLINA WLSFKK+ EK +VN NPL +HEN KVNVVD
Subjt:  IQPPYPKWYDPNARCDYHAGGAGHSTENCLALKRKVQSLINAGWLSFKKASEKPDVNNNPLLNHENSKVNVVD

A0A5A7T1W2 Retrotrans_gag domain-containing protein4.0e-10171.43Show/hide
Query:  MEKKSSESFKEYVQRWRDKAAEVQPPLTDKEMTSMFMNTLRAPFYDRMIGNATTNFSDIIVIGERIEYGIKYGRIVEAPTEYGGIKRGAASKKKEGE---
        MEKKSSESFKEY QRWRD AAEVQPPLTDKEMTSMFMNTLRAPFY+RMIGNA+TNFSDIIVIGERIEYGIK+GR+ EA TEYGGIK+G  SKKKEGE   
Subjt:  MEKKSSESFKEYVQRWRDKAAEVQPPLTDKEMTSMFMNTLRAPFYDRMIGNATTNFSDIIVIGERIEYGIKYGRIVEAPTEYGGIKRGAASKKKEGE---

Query:  ------------------------------------------------PVNSNSPRPFAQGQGSKANSDTWRLDPIPMTYTELLPQLIQNRQLAPIPMIP
                                                        PVNSNSPRPF QGQGSK NSDTWR DPIPMTYTELLPQLIQNRQLA IPMIP
Subjt:  ------------------------------------------------PVNSNSPRPFAQGQGSKANSDTWRLDPIPMTYTELLPQLIQNRQLAPIPMIP

Query:  IQPPYPKWYDPNARCDYHAGGAGHSTENCLALKRKVQSLINAGWLSFKKASEKPDVNNNPLLNHENSKVNVVD
        IQPPYPKWYD NARCDYHAGG GHSTENCLALKR VQSLINAGWLSFKK+ EK +VN NPL + EN KVNVVD
Subjt:  IQPPYPKWYDPNARCDYHAGGAGHSTENCLALKRKVQSLINAGWLSFKKASEKPDVNNNPLLNHENSKVNVVD

A0A5A7T5W2 Retrotrans_gag domain-containing protein1.3e-10481.28Show/hide
Query:  MEKKSSESFKEYVQRWRDKAAEVQPPLTDKEMTSMFMNTLRAPFYDRMIGNATTNFSDIIVIGERIEYGIKYGRIVEAPTEYGGIKRGAASKKKEGE---
        MEKKSSESFKEY QRWRD  AEVQPPLTDKEMTSMF+NTLRAPFY+RMIGNA+TNFSDIIVIGERIEYGIK+GR+ EA TEYGGIK+G  SKKKEGE   
Subjt:  MEKKSSESFKEYVQRWRDKAAEVQPPLTDKEMTSMFMNTLRAPFYDRMIGNATTNFSDIIVIGERIEYGIKYGRIVEAPTEYGGIKRGAASKKKEGE---

Query:  ----------PVNSNSPRPFAQGQGSKANSDTWRLDPIPMTYTELLPQLIQNRQLAPIPMIPIQPPYPKWYDPNARCDYHAGGAGHSTENCLALKRKVQS
                  PVNSNSPRPF QGQGSK N DTW+ DPIPMTYTELLPQLIQNRQ+A IPMIPIQPPYPKWYD NARCDYHAGG GHSTENCLALKR VQS
Subjt:  ----------PVNSNSPRPFAQGQGSKANSDTWRLDPIPMTYTELLPQLIQNRQLAPIPMIPIQPPYPKWYDPNARCDYHAGGAGHSTENCLALKRKVQS

Query:  LINAGWLSFKKASEKPDVNNNPLLNHENSKVNVVD
        LINAGWLSFKK+ +KP+VN NPL +HEN KVNVVD
Subjt:  LINAGWLSFKKASEKPDVNNNPLLNHENSKVNVVD

A0A5A7V3W7 Retrotrans_gag domain-containing protein2.8e-10271.06Show/hide
Query:  MEKKSSESFKEYVQRWRDKAAEVQPPLTDKEMTSMFMNTLRAPFYDRMIGNATTNFSDIIVIGERIEYGIKYGRIVEAPTEYGGIKRGAASKKKEGE---
        MEKKSSESFKEY QRW+D  AEVQPPLTDKEMTSMFMNTLRAPFY+RMIGNA+TNFSDIIVIGERIEYGIK+GR+ E  TEYGGIK+G  SKKKEGE   
Subjt:  MEKKSSESFKEYVQRWRDKAAEVQPPLTDKEMTSMFMNTLRAPFYDRMIGNATTNFSDIIVIGERIEYGIKYGRIVEAPTEYGGIKRGAASKKKEGE---

Query:  ------------------------------------------------PVNSNSPRPFAQGQGSKANSDTWRLDPIPMTYTELLPQLIQNRQLAPIPMIP
                                                        PVNSNSPRPF QGQGSK NSDTWR DPIPMTYTELLPQLIQNRQLAPIPMIP
Subjt:  ------------------------------------------------PVNSNSPRPFAQGQGSKANSDTWRLDPIPMTYTELLPQLIQNRQLAPIPMIP

Query:  IQPPYPKWYDPNARCDYHAGGAGHSTENCLALKRKVQSLINAGWLSFKKASEKPDVNNNPLLNHENSKVNVVD
        IQPPYPKWYD NARCDYHAGG GHSTENC ALKR VQSLINAGWLSFKK+ EKP+VN NPL NHEN KVN VD
Subjt:  IQPPYPKWYDPNARCDYHAGGAGHSTENCLALKRKVQSLINAGWLSFKKASEKPDVNNNPLLNHENSKVNVVD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGAAGAAGAGTTCTGAAAGTTTCAAAGAATATGTTCAACGATGGAGAGACAAGGCCGCTGAGGTTCAGCCACCATTAACAGACAAAGAAATGACATCTATGTTTAT
GAATACTTTACGGGCTCCATTCTATGATCGAATGATTGGTAATGCAACAACGAATTTTTCTGACATTATCGTTATTGGTGAAAGAATTGAATATGGGATAAAGTACGGGA
GGATAGTAGAGGCGCCAACTGAATATGGAGGAATAAAGAGAGGGGCAGCATCTAAGAAGAAAGAAGGAGAGCCTGTTAACTCAAACTCTCCTCGGCCATTTGCACAAGGT
CAAGGTAGCAAAGCCAATTCAGATACTTGGCGATTGGATCCAATTCCCATGACCTATACAGAGCTTTTACCCCAACTAATTCAAAATCGACAGTTAGCTCCTATTCCAAT
GATCCCTATACAACCTCCTTATCCAAAATGGTATGATCCAAATGCTCGATGTGATTATCATGCTGGAGGGGCAGGACACTCAACTGAAAATTGTTTGGCTTTGAAAAGGA
AGGTGCAATCTCTGATTAATGCTGGATGGTTAAGCTTTAAGAAAGCTAGTGAGAAGCCAGATGTGAATAATAATCCACTCCTTAATCATGAAAATTCAAAGGTGAATGTT
GTGGATTGCTTTGACGGAGTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGAGAAGAAGAGTTCTGAAAGTTTCAAAGAATATGTTCAACGATGGAGAGACAAGGCCGCTGAGGTTCAGCCACCATTAACAGACAAAGAAATGACATCTATGTTTAT
GAATACTTTACGGGCTCCATTCTATGATCGAATGATTGGTAATGCAACAACGAATTTTTCTGACATTATCGTTATTGGTGAAAGAATTGAATATGGGATAAAGTACGGGA
GGATAGTAGAGGCGCCAACTGAATATGGAGGAATAAAGAGAGGGGCAGCATCTAAGAAGAAAGAAGGAGAGCCTGTTAACTCAAACTCTCCTCGGCCATTTGCACAAGGT
CAAGGTAGCAAAGCCAATTCAGATACTTGGCGATTGGATCCAATTCCCATGACCTATACAGAGCTTTTACCCCAACTAATTCAAAATCGACAGTTAGCTCCTATTCCAAT
GATCCCTATACAACCTCCTTATCCAAAATGGTATGATCCAAATGCTCGATGTGATTATCATGCTGGAGGGGCAGGACACTCAACTGAAAATTGTTTGGCTTTGAAAAGGA
AGGTGCAATCTCTGATTAATGCTGGATGGTTAAGCTTTAAGAAAGCTAGTGAGAAGCCAGATGTGAATAATAATCCACTCCTTAATCATGAAAATTCAAAGGTGAATGTT
GTGGATTGCTTTGACGGAGTGTAA
Protein sequenceShow/hide protein sequence
MEKKSSESFKEYVQRWRDKAAEVQPPLTDKEMTSMFMNTLRAPFYDRMIGNATTNFSDIIVIGERIEYGIKYGRIVEAPTEYGGIKRGAASKKKEGEPVNSNSPRPFAQG
QGSKANSDTWRLDPIPMTYTELLPQLIQNRQLAPIPMIPIQPPYPKWYDPNARCDYHAGGAGHSTENCLALKRKVQSLINAGWLSFKKASEKPDVNNNPLLNHENSKVNV
VDCFDGV