CuGenDBv2

Gene ID	PI0004260
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	50S ribosomal protein L33-like
Genome location	chr12:7109927..7111441
RNA-Seq Expression	PI0004260
Synteny	PI0004260
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0009536 - plastid (cellular component) GO:0015934 - large ribosomal subunit (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003676 - nucleic acid binding (molecular function) GO:0003735 - structural constituent of ribosome (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	IPR001705 - Ribosomal protein L33 IPR011332 - Zinc-binding ribosomal protein IPR038584 - Ribosomal protein L33 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6575038.1 hypothetical protein SDJN03_25677, partial [Cucurbita argyrosperma subsp. sororia]

5.0e-23

100

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Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

KAG7013613.1 rpmG, partial [Cucurbita argyrosperma subsp. argyrosperma]

5.0e-23

100

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Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

XP_004135554.1 uncharacterized protein LOC101212288 [Cucumis sativus]

5.0e-23

100

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Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

XP_007223555.1 uncharacterized protein LOC18791548 [Prunus persica]

5.6e-22

94.74

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Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKKAT+FIRLVSAAGTGFFYVKRKPTK+TEKLEFRK+DPRVNRHVLFTEAKMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

XP_022137876.1 uncharacterized protein LOC111009198 [Momordica charantia]

8.6e-23

98.25

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Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK+TEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LVW9 Uncharacterized protein

2.4e-23

100

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Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

A0A1S3BBV4 50S ribosomal protein L33-like

2.4e-23

100

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Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

A0A6J1CA39 uncharacterized protein LOC111009599

2.4e-23

100

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Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

A0A6J1H6A1 uncharacterized protein LOC111459991

2.4e-23

100

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Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

A0A6J1KVU2 uncharacterized protein LOC111499157

2.4e-23

100

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Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

SwissProt top hits

e value

%identity

Alignment

A8GY80 50S ribosomal protein L33

6.0e-11

62.96

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Query:  KKKATMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        KK   + +RLVS AGTGFF V KR P   TEKL FRKYDP+V +HVLF E K+K
Subjt:  KKKATMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

B3CRY6 50S ribosomal protein L33

6.0e-11

61.11

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Query:  KKKATMFIRLVSAAGTGFFYVK-RKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        +KK  + ++LVS+AGTG F+VK R P   TEKL FRKYDP+V +HV FTEAK+K
Subjt:  KKKATMFIRLVSAAGTGFFYVK-RKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

B6IN38 50S ribosomal protein L33

5.4e-12

66.04

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Query:  KKATMFIRLVSAAGTGFFYVKRK-PTKITEKLEFRKYDPRVNRHVLFTEAKMK
        K+ T+ I+LVS+A TGFFYVK+K P K TEKLEF+KYDP   +HV+F EAKMK
Subjt:  KKATMFIRLVSAAGTGFFYVKRK-PTKITEKLEFRKYDPRVNRHVLFTEAKMK

Q1RGQ4 50S ribosomal protein L33

6.0e-11

62.96

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Query:  KKKATMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        KK   + +RLVS AGTGFF V KR P   TEKL FRKYDP+V +HVLF E K+K
Subjt:  KKKATMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

Q2W1A2 50S ribosomal protein L33

3.2e-12

67.92

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Query:  KKATMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK
        K AT+ I+L+S AGTGFFYV K+ P K TEKLEFRKYDP V +HV F EAK+K
Subjt:  KKATMFIRLVSAAGTGFFYV-KRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

Arabidopsis top hits

e value

%identity

Alignment

AT3G06320.1 Ribosomal protein L33 family protein

1.3e-21

86.21

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Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK-ITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDK+KK  MFIRLVSAAGTGFFYVKRK TK + EKLEFRKYDPRVNRHVLFTE KMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK-ITEKLEFRKYDPRVNRHVLFTEAKMK

AT5G18790.1 Ribosomal protein L33 family protein

1.3e-21

86.21

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Query:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK-ITEKLEFRKYDPRVNRHVLFTEAKMK
        MGDK+KK  MFIRLVSAAGTGFFYVKRK TK + EKLEFRKYDPRVNRHVLFTE KMK
Subjt:  MGDKKKKATMFIRLVSAAGTGFFYVKRKPTK-ITEKLEFRKYDPRVNRHVLFTEAKMK

Sequences

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CDS sequence

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ATGGGTGACAAGAAAAAGAAAGCTACCATGTTCATCCGACTTGTATCAGCTGCTGGGACTGGATTCTTCTATGTTAAAAGAAAGCCAACCAAAATTACGGAGAAGCTCGA
GTTCCGAAAATACGATCCTCGGGTCAATCGACATGTTTTGTTTACAGAAGCGAAAATGAAATAA

mRNA sequence

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AAAAGTCAGACCTCGTCTTCTTCACATTTCTTCCACTAATCCCCTCCATCTACCCTTGCCGACGATCAGCTGCCTTCCCGCCGCCGCCGGAAATGGGTGACAAGAAAAAG
AAAGCTACCATGTTCATCCGACTTGTATCAGCTGCTGGGACTGGATTCTTCTATGTTAAAAGAAAGCCAACCAAAATTACGGAGAAGCTCGAGTTCCGAAAATACGATCC
TCGGGTCAATCGACATGTTTTGTTTACAGAAGCGAAAATGAAATAAAAGAAGAAAGGAATAAAAATCAATTACCCTTTCAACTTGGACCTATTCTTCTTTCGGTCCATAG
GTTTTGGAGCTTTGCAATTAGTCTTCTCCATTTTAGACTGATGTTTCATATTTGCTAGTCTTTTCCCTTGGCTCATCTTCAGCCTTTGTGAAACAGTATGTTTGTACATC
AAATTCTATGGCCTGGAATTGTTTGCCCCTTGATCTCTTGTGGTCAAATGTGTTGAGATAATTTATAAGATATAGTTTTGAATT

Protein sequence

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MGDKKKKATMFIRLVSAAGTGFFYVKRKPTKITEKLEFRKYDPRVNRHVLFTEAKMK

PI0004260 (gene) of Melon (PI 482460) v1 genome