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PI0004274 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004274
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionIntegrase catalytic domain-containing protein
Genome locationchr01:20299000..20299266
RNA-Seq ExpressionPI0004274
SyntenyPI0004274
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR041373 - Reverse transcriptase, RNase H-like domain
IPR043502 - DNA/RNA polymerase superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062295.1 hypothetical protein E6C27_scaffold154G00380 [Cucumis melo var. makuwa]6.8e-2773.56Show/hide
Query:  MCDASDMVVEAMLGQKKDKVIHPIYYASKTLTDVQKNYTTTKKELLAVVFTIEKFRSYIVGSKVTVHSDHSVIRFLMAKKDTKPWLI
        MCDASD+V+ AMLGQK DKVI+PIY  SKTL + Q+NYTTT+KELLAVVF IEK+ SYIVGSKVT+HSDH  IR+LM KKD +P LI
Subjt:  MCDASDMVVEAMLGQKKDKVIHPIYYASKTLTDVQKNYTTTKKELLAVVFTIEKFRSYIVGSKVTVHSDHSVIRFLMAKKDTKPWLI

KAA0062414.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]5.5e-2976.14Show/hide
Query:  MCDASDMVVEAMLGQKKDKVIHPIYYASKTLTDVQKNYTTTKKELLAVVFTIEKFRSYIVGSKVTVHSDHSVIRFLMAKKDTKPWLIR
        MCDASD+VV  M GQKKDKV  PIYYA KTL + ++NYTT +KELLA+VF IEKFRSYIVGSKVT+HSDHS IR+LMAKKD K WLIR
Subjt:  MCDASDMVVEAMLGQKKDKVIHPIYYASKTLTDVQKNYTTTKKELLAVVFTIEKFRSYIVGSKVTVHSDHSVIRFLMAKKDTKPWLIR

TYK26567.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]5.5e-2976.14Show/hide
Query:  MCDASDMVVEAMLGQKKDKVIHPIYYASKTLTDVQKNYTTTKKELLAVVFTIEKFRSYIVGSKVTVHSDHSVIRFLMAKKDTKPWLIR
        MCDASD+VV  M GQKKDKV  PIYYA KTL + ++NYTT +KELLA+VF IEKFRSYIVGSKVT+HSDHS IR+LMAKKD K WLIR
Subjt:  MCDASDMVVEAMLGQKKDKVIHPIYYASKTLTDVQKNYTTTKKELLAVVFTIEKFRSYIVGSKVTVHSDHSVIRFLMAKKDTKPWLIR

WP_217833163.1 Ty3/Gypsy family RNase HI domain-containing protein, partial [Synechococcus sp. PCC 7002]5.2e-2767.05Show/hide
Query:  MCDASDMVVEAMLGQKKDKVIHPIYYASKTLTDVQKNYTTTKKELLAVVFTIEKFRSYIVGSKVTVHSDHSVIRFLMAKKDTKPWLIR
        MCDAS+ VV A+LGQ+K+K++HPIYYASKTL   Q+NYTTT+KE+LA+VF ++KFR+Y +GSKVT++SDHS I++LM KKD KP LIR
Subjt:  MCDASDMVVEAMLGQKKDKVIHPIYYASKTLTDVQKNYTTTKKELLAVVFTIEKFRSYIVGSKVTVHSDHSVIRFLMAKKDTKPWLIR

XP_017970395.1 PREDICTED: uncharacterized protein LOC108660654 [Theobroma cacao]4.0e-2771.59Show/hide
Query:  MCDASDMVVEAMLGQKKDKVIHPIYYASKTLTDVQKNYTTTKKELLAVVFTIEKFRSYIVGSKVTVHSDHSVIRFLMAKKDTKPWLIR
        MCDASD  V A+LGQ+KDK+ H IYYASKTL + QKNYTTT+KELLAVVFT +KF SY+VG+KV V+ DHS I++L+AKKDTKP LIR
Subjt:  MCDASDMVVEAMLGQKKDKVIHPIYYASKTLTDVQKNYTTTKKELLAVVFTIEKFRSYIVGSKVTVHSDHSVIRFLMAKKDTKPWLIR

TrEMBL top hitse value%identityAlignment
A0A2G9HH15 Reverse transcriptase5.6e-2768.18Show/hide
Query:  MCDASDMVVEAMLGQKKDKVIHPIYYASKTLTDVQKNYTTTKKELLAVVFTIEKFRSYIVGSKVTVHSDHSVIRFLMAKKDTKPWLIR
        MCDASD  + A+LGQ+KDK+   IYYASKTL D Q NYTTT+KELLAVVF  +KFRSY+VG+KV V++DH+ IR+L+ KKD KPWLIR
Subjt:  MCDASDMVVEAMLGQKKDKVIHPIYYASKTLTDVQKNYTTTKKELLAVVFTIEKFRSYIVGSKVTVHSDHSVIRFLMAKKDTKPWLIR

A0A5A7V586 Retrovirus-related Pol polyprotein from transposon 17.62.7e-2976.14Show/hide
Query:  MCDASDMVVEAMLGQKKDKVIHPIYYASKTLTDVQKNYTTTKKELLAVVFTIEKFRSYIVGSKVTVHSDHSVIRFLMAKKDTKPWLIR
        MCDASD+VV  M GQKKDKV  PIYYA KTL + ++NYTT +KELLA+VF IEKFRSYIVGSKVT+HSDHS IR+LMAKKD K WLIR
Subjt:  MCDASDMVVEAMLGQKKDKVIHPIYYASKTLTDVQKNYTTTKKELLAVVFTIEKFRSYIVGSKVTVHSDHSVIRFLMAKKDTKPWLIR

A0A5A7V8R9 RT_RNaseH domain-containing protein3.3e-2773.56Show/hide
Query:  MCDASDMVVEAMLGQKKDKVIHPIYYASKTLTDVQKNYTTTKKELLAVVFTIEKFRSYIVGSKVTVHSDHSVIRFLMAKKDTKPWLI
        MCDASD+V+ AMLGQK DKVI+PIY  SKTL + Q+NYTTT+KELLAVVF IEK+ SYIVGSKVT+HSDH  IR+LM KKD +P LI
Subjt:  MCDASDMVVEAMLGQKKDKVIHPIYYASKTLTDVQKNYTTTKKELLAVVFTIEKFRSYIVGSKVTVHSDHSVIRFLMAKKDTKPWLI

A0A5D3DS34 Retrovirus-related Pol polyprotein from transposon 17.62.7e-2976.14Show/hide
Query:  MCDASDMVVEAMLGQKKDKVIHPIYYASKTLTDVQKNYTTTKKELLAVVFTIEKFRSYIVGSKVTVHSDHSVIRFLMAKKDTKPWLIR
        MCDASD+VV  M GQKKDKV  PIYYA KTL + ++NYTT +KELLA+VF IEKFRSYIVGSKVT+HSDHS IR+LMAKKD K WLIR
Subjt:  MCDASDMVVEAMLGQKKDKVIHPIYYASKTLTDVQKNYTTTKKELLAVVFTIEKFRSYIVGSKVTVHSDHSVIRFLMAKKDTKPWLIR

A0A6J1DHH9 LOW QUALITY PROTEIN: uncharacterized protein LOC1110201109.5e-2767.05Show/hide
Query:  MCDASDMVVEAMLGQKKDKVIHPIYYASKTLTDVQKNYTTTKKELLAVVFTIEKFRSYIVGSKVTVHSDHSVIRFLMAKKDTKPWLIR
        MCDASD  + AMLGQ+K+K++HP+YYASKTLT  Q NYTTT+KELLAVVF  +KFRSY++G+KV V +DHS +++L AKKD KP LIR
Subjt:  MCDASDMVVEAMLGQKKDKVIHPIYYASKTLTDVQKNYTTTKKELLAVVFTIEKFRSYIVGSKVTVHSDHSVIRFLMAKKDTKPWLIR

SwissProt top hitse value%identityAlignment
P04323 Retrovirus-related Pol polyprotein from transposon 17.61.7e-0939.53Show/hide
Query:  DASDMVVEAMLGQKKDKVIHPIYYASKTLTDVQKNYTTTKKELLAVVFTIEKFRSYIVGSKVTVHSDHSVIRFLMAKKDTKPWLIR
        DASD+ + A+L Q      HP+ Y S+TL + + NY+T +KELLA+V+  + FR Y++G    + SDH  + +L   KD    L R
Subjt:  DASDMVVEAMLGQKKDKVIHPIYYASKTLTDVQKNYTTTKKELLAVVFTIEKFRSYIVGSKVTVHSDHSVIRFLMAKKDTKPWLIR

P10394 Retrovirus-related Pol polyprotein from transposon 4121.2e-0534.88Show/hide
Query:  DASDMVVEAMLGQKKDKVIHPIYYASKTLTDVQKNYTTTKKELLAVVFTIEKFRSYIVGSKVTVHSDHSVIRFLMAKKDTKPWLIR
        DAS     A+L Q  +    P+ YAS+  T  + N +TT++EL A+ + I  FR YI G   TV +DH  + +L +  +    L R
Subjt:  DASDMVVEAMLGQKKDKVIHPIYYASKTLTDVQKNYTTTKKELLAVVFTIEKFRSYIVGSKVTVHSDHSVIRFLMAKKDTKPWLIR

P10401 Retrovirus-related Pol polyprotein from transposon gypsy1.5e-0533.33Show/hide
Query:  DASDMVVEAMLGQKKDKVIHPIYYASKTLTDVQKNYTTTKKELLAVVFTIEKFRSYIVGSK-VTVHSDHSVIRFLMAKKDT
        DAS   + A+L Q+      PI   S+TL   ++NY T ++ELLA+V+ + K ++++ GS+ + + +DH  + F +A ++T
Subjt:  DASDMVVEAMLGQKKDKVIHPIYYASKTLTDVQKNYTTTKKELLAVVFTIEKFRSYIVGSK-VTVHSDHSVIRFLMAKKDT

P20825 Retrovirus-related Pol polyprotein from transposon 2971.9e-0839.24Show/hide
Query:  DASDMVVEAMLGQKKDKVIHPIYYASKTLTDVQKNYTTTKKELLAVVFTIEKFRSYIVGSKVTVHSDHSVIRFLMAKKD
        DAS++ + A+L Q      HPI + S+TL D + NY+  +KELLA+V+  + FR Y++G +  + SDH  +R+L   K+
Subjt:  DASDMVVEAMLGQKKDKVIHPIYYASKTLTDVQKNYTTTKKELLAVVFTIEKFRSYIVGSKVTVHSDHSVIRFLMAKKD

Q8I7P9 Retrovirus-related Pol polyprotein from transposon opus2.8e-0731.25Show/hide
Query:  DASDMVVEAMLGQKKDKVIHPIYYASKTLTDVQKNYTTTKKELLAVVFTIEKFRSYIVGS-KVTVHSDHSVIRFLMAKKD
        DAS+  + A+L Q       PI Y S++L   ++NY T +KE+LA++++++  R+Y+ G+  + V++DH  + F +  ++
Subjt:  DASDMVVEAMLGQKKDKVIHPIYYASKTLTDVQKNYTTTKKELLAVVFTIEKFRSYIVGS-KVTVHSDHSVIRFLMAKKD

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTGTGACGCAAGTGATATGGTGGTAGAGGCTATGCTAGGTCAAAAGAAAGATAAAGTGATCCACCCTATATACTACGCGAGCAAGACTCTCACTGATGTTCAAAAGAA
TTATACAACCACAAAGAAGGAATTGCTTGCAGTAGTATTCACGATTGAAAAGTTTAGGAGTTATATTGTTGGCTCCAAAGTTACGGTACATTCTGATCACTCTGTGATCA
GATTCCTCATGGCGAAAAAGGACACCAAGCCGTGGTTAATTAGATGA
mRNA sequenceShow/hide mRNA sequence
ATGTGTGACGCAAGTGATATGGTGGTAGAGGCTATGCTAGGTCAAAAGAAAGATAAAGTGATCCACCCTATATACTACGCGAGCAAGACTCTCACTGATGTTCAAAAGAA
TTATACAACCACAAAGAAGGAATTGCTTGCAGTAGTATTCACGATTGAAAAGTTTAGGAGTTATATTGTTGGCTCCAAAGTTACGGTACATTCTGATCACTCTGTGATCA
GATTCCTCATGGCGAAAAAGGACACCAAGCCGTGGTTAATTAGATGA
Protein sequenceShow/hide protein sequence
MCDASDMVVEAMLGQKKDKVIHPIYYASKTLTDVQKNYTTTKKELLAVVFTIEKFRSYIVGSKVTVHSDHSVIRFLMAKKDTKPWLIR