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PI0004298 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004298
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase Ty1/copia-type domain-containing protein
Genome locationchr06:21582598..21582929
RNA-Seq ExpressionPI0004298
SyntenyPI0004298
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0048414.1 uncharacterized protein E6C27_scaffold264G001400 [Cucumis melo var. makuwa]3.0e-2862.39Show/hide
Query:  MVGLIQGDMLTTDFHRPFHFKGAHFKHWKQKMLFYLTLKKVATAYITKVPKIPKIDLTEEQF-------------KNLILNGLTDEFYDYYSTMSTAKEV
        M G IQ D++++D +RPF F+GAHFK WKQKMLF+LTLKKVATA  T+  K+ + D TEEQ              KNLILNGLT+E YDYYSTM+T KEV
Subjt:  MVGLIQGDMLTTDFHRPFHFKGAHFKHWKQKMLFYLTLKKVATAYITKVPKIPKIDLTEEQF-------------KNLILNGLTDEFYDYYSTMSTAKEV

Query:  WDALQKKYD
        WDALQKKYD
Subjt:  WDALQKKYD

KAA0055814.1 hypothetical protein E6C27_scaffold181G002040 [Cucumis melo var. makuwa]6.8e-2862.39Show/hide
Query:  MVGLIQGDMLTTDFHRPFHFKGAHFKHWKQKMLFYLTLKKVATAYITKVPKIPKIDLTEEQF-------------KNLILNGLTDEFYDYYSTMSTAKEV
        M   IQ D++++DF+RPF F+GA+FK WKQKMLF+LTLKKV TA  T+  K+ + D TEEQ              KNLILNGLTDE YDYYSTM+TAKEV
Subjt:  MVGLIQGDMLTTDFHRPFHFKGAHFKHWKQKMLFYLTLKKVATAYITKVPKIPKIDLTEEQF-------------KNLILNGLTDEFYDYYSTMSTAKEV

Query:  WDALQKKYD
        WDALQKKYD
Subjt:  WDALQKKYD

KAA0058200.1 uncharacterized protein E6C27_scaffold274G005210 [Cucumis melo var. makuwa]6.1e-2963.3Show/hide
Query:  MVGLIQGDMLTTDFHRPFHFKGAHFKHWKQKMLFYLTLKKVATAYITKVPKIPKIDLTEEQF-------------KNLILNGLTDEFYDYYSTMSTAKEV
        M G IQ D+++ D +RPF F+GAHFK WKQKMLF+LTLKKVATA  T+ P++ + D TE+Q              KNLILNGLTDE YDYYSTM+TAKEV
Subjt:  MVGLIQGDMLTTDFHRPFHFKGAHFKHWKQKMLFYLTLKKVATAYITKVPKIPKIDLTEEQF-------------KNLILNGLTDEFYDYYSTMSTAKEV

Query:  WDALQKKYD
        WDALQKKYD
Subjt:  WDALQKKYD

KAA0060458.1 uncharacterized protein E6C27_scaffold22G002860 [Cucumis melo var. makuwa]6.1e-2963.3Show/hide
Query:  MVGLIQGDMLTTDFHRPFHFKGAHFKHWKQKMLFYLTLKKVATAYITKVPKIPKIDLTEEQF-------------KNLILNGLTDEFYDYYSTMSTAKEV
        M G IQ D++++D +R F F+GAHFK WKQK+LF+LTLKKVATA  T+ PK+ + D TEEQ              KNLILNGLTDE YDYYSTM+TAKEV
Subjt:  MVGLIQGDMLTTDFHRPFHFKGAHFKHWKQKMLFYLTLKKVATAYITKVPKIPKIDLTEEQF-------------KNLILNGLTDEFYDYYSTMSTAKEV

Query:  WDALQKKYD
        WDALQKKYD
Subjt:  WDALQKKYD

KAA0065374.1 uncharacterized protein E6C27_scaffold17G00360 [Cucumis melo var. makuwa]1.4e-2863.3Show/hide
Query:  MVGLIQGDMLTTDFHRPFHFKGAHFKHWKQKMLFYLTLKKVATAYITKVPKIPKIDLTEEQF-------------KNLILNGLTDEFYDYYSTMSTAKEV
        MVG IQ D++++D +RPF F+GAHFK WKQKMLF+LTLKKVATA  T+  K+ + D  EEQ              KNLILNGLTDE YDYYSTM+T KEV
Subjt:  MVGLIQGDMLTTDFHRPFHFKGAHFKHWKQKMLFYLTLKKVATAYITKVPKIPKIDLTEEQF-------------KNLILNGLTDEFYDYYSTMSTAKEV

Query:  WDALQKKYD
        WDALQKKYD
Subjt:  WDALQKKYD

TrEMBL top hitse value%identityAlignment
A0A5A7USR3 Uncharacterized protein3.0e-2963.3Show/hide
Query:  MVGLIQGDMLTTDFHRPFHFKGAHFKHWKQKMLFYLTLKKVATAYITKVPKIPKIDLTEEQF-------------KNLILNGLTDEFYDYYSTMSTAKEV
        M G IQ D+++ D +RPF F+GAHFK WKQKMLF+LTLKKVATA  T+ P++ + D TE+Q              KNLILNGLTDE YDYYSTM+TAKEV
Subjt:  MVGLIQGDMLTTDFHRPFHFKGAHFKHWKQKMLFYLTLKKVATAYITKVPKIPKIDLTEEQF-------------KNLILNGLTDEFYDYYSTMSTAKEV

Query:  WDALQKKYD
        WDALQKKYD
Subjt:  WDALQKKYD

A0A5A7UYY4 Uncharacterized protein3.0e-2963.3Show/hide
Query:  MVGLIQGDMLTTDFHRPFHFKGAHFKHWKQKMLFYLTLKKVATAYITKVPKIPKIDLTEEQF-------------KNLILNGLTDEFYDYYSTMSTAKEV
        M G IQ D++++D +R F F+GAHFK WKQK+LF+LTLKKVATA  T+ PK+ + D TEEQ              KNLILNGLTDE YDYYSTM+TAKEV
Subjt:  MVGLIQGDMLTTDFHRPFHFKGAHFKHWKQKMLFYLTLKKVATAYITKVPKIPKIDLTEEQF-------------KNLILNGLTDEFYDYYSTMSTAKEV

Query:  WDALQKKYD
        WDALQKKYD
Subjt:  WDALQKKYD

A0A5D3BEH3 Uncharacterized protein1.5e-2862.39Show/hide
Query:  MVGLIQGDMLTTDFHRPFHFKGAHFKHWKQKMLFYLTLKKVATAYITKVPKIPKIDLTEEQF-------------KNLILNGLTDEFYDYYSTMSTAKEV
        M G IQ D++++D +RPF F+GAHFK WKQKMLF+LTLKKVATA  T+  K+ + D TEEQ              KNLILNGLT+E YDYYSTM+T KEV
Subjt:  MVGLIQGDMLTTDFHRPFHFKGAHFKHWKQKMLFYLTLKKVATAYITKVPKIPKIDLTEEQF-------------KNLILNGLTDEFYDYYSTMSTAKEV

Query:  WDALQKKYD
        WDALQKKYD
Subjt:  WDALQKKYD

A0A5D3CEV3 Uncharacterized protein3.3e-2862.39Show/hide
Query:  MVGLIQGDMLTTDFHRPFHFKGAHFKHWKQKMLFYLTLKKVATAYITKVPKIPKIDLTEEQF-------------KNLILNGLTDEFYDYYSTMSTAKEV
        M   IQ D++++DF+RPF F+GA+FK WKQKMLF+LTLKKV TA  T+  K+ + D TEEQ              KNLILNGLTDE YDYYSTM+TAKEV
Subjt:  MVGLIQGDMLTTDFHRPFHFKGAHFKHWKQKMLFYLTLKKVATAYITKVPKIPKIDLTEEQF-------------KNLILNGLTDEFYDYYSTMSTAKEV

Query:  WDALQKKYD
        WDALQKKYD
Subjt:  WDALQKKYD

A0A5D3DC59 Reverse transcriptase Ty1/copia-type domain-containing protein6.6e-2963.3Show/hide
Query:  MVGLIQGDMLTTDFHRPFHFKGAHFKHWKQKMLFYLTLKKVATAYITKVPKIPKIDLTEEQF-------------KNLILNGLTDEFYDYYSTMSTAKEV
        MVG IQ D++++D +RPF F+GAHFK WKQKMLF+LTLKKVATA  T+  K+ + D  EEQ              KNLILNGLTDE YDYYSTM+T KEV
Subjt:  MVGLIQGDMLTTDFHRPFHFKGAHFKHWKQKMLFYLTLKKVATAYITKVPKIPKIDLTEEQF-------------KNLILNGLTDEFYDYYSTMSTAKEV

Query:  WDALQKKYD
        WDALQKKYD
Subjt:  WDALQKKYD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGGTCTAATCCAAGGCGATATGCTAACCACAGATTTCCATCGACCATTCCATTTCAAAGGAGCTCATTTCAAGCATTGGAAACAAAAAATGTTGTTTTACTTGAC
CTTGAAGAAGGTTGCTACTGCCTATATTACCAAAGTGCCAAAAATTCCAAAAATTGATCTAACAGAGGAGCAATTCAAAAATTTAATACTTAATGGACTTACTGACGAGT
TTTATGACTACTACAGTACCATGTCCACTGCGAAAGAAGTTTGGGATGCGCTGCAAAAGAAGTATGACATGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTCGGTCTAATCCAAGGCGATATGCTAACCACAGATTTCCATCGACCATTCCATTTCAAAGGAGCTCATTTCAAGCATTGGAAACAAAAAATGTTGTTTTACTTGAC
CTTGAAGAAGGTTGCTACTGCCTATATTACCAAAGTGCCAAAAATTCCAAAAATTGATCTAACAGAGGAGCAATTCAAAAATTTAATACTTAATGGACTTACTGACGAGT
TTTATGACTACTACAGTACCATGTCCACTGCGAAAGAAGTTTGGGATGCGCTGCAAAAGAAGTATGACATGTAA
Protein sequenceShow/hide protein sequence
MVGLIQGDMLTTDFHRPFHFKGAHFKHWKQKMLFYLTLKKVATAYITKVPKIPKIDLTEEQFKNLILNGLTDEFYDYYSTMSTAKEVWDALQKKYDM