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PI0004306 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004306
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon 17.6
Genome locationchr03:13141057..13142025
RNA-Seq ExpressionPI0004306
SyntenyPI0004306
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035763.1 hypothetical protein E6C27_scaffold403G00380 [Cucumis melo var. makuwa]4.4e-1365.67Show/hide
Query:  IKATLDTMANNNEEWDEDDFNNRRGGRGRSDEGMDKNAVVALKGRMTAMNNLLKSMAISQVNVVGSS
        IKATLD+M NNNEE D+DDF + R GRG+++EG+D N VVAL+G+MT MNNLL+S+ +SQVNV  SS
Subjt:  IKATLDTMANNNEEWDEDDFNNRRGGRGRSDEGMDKNAVVALKGRMTAMNNLLKSMAISQVNVVGSS

KAA0051815.1 hypothetical protein E6C27_scaffold60G002300 [Cucumis melo var. makuwa]1.9e-1170.59Show/hide
Query:  NNRNVPPQQAAQEQNAAYMAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENI
        NN+N P  Q  QEQN AY+AHDLD+PI+SYA+PNLY+FNPGIAY  FGEN+
Subjt:  NNRNVPPQQAAQEQNAAYMAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENI

KAA0060833.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]1.9e-1659.09Show/hide
Query:  MSEGEQPKFELDPEIELTFRRNRRRRRQRNAQRMENN-NNRNVPPQQAAQEQNAAYMAHDLDRPIRSYAAPNLYNFNPGIAYPVFGEN
        MSEGEQPKF +D EIE  F+RNRR+R++R      N+ NN+  P  QA Q  N  Y+AH+ DRPIRS  +PNLY FNPGI YP FGEN
Subjt:  MSEGEQPKFELDPEIELTFRRNRRRRRQRNAQRMENN-NNRNVPPQQAAQEQNAAYMAHDLDRPIRSYAAPNLYNFNPGIAYPVFGEN

TYK08803.1 Retrovirus-related Pol polyprotein from transposon 17.6 [Cucumis melo var. makuwa]1.9e-1659.09Show/hide
Query:  MSEGEQPKFELDPEIELTFRRNRRRRRQRNAQRMENN-NNRNVPPQQAAQEQNAAYMAHDLDRPIRSYAAPNLYNFNPGIAYPVFGEN
        MSEGEQPKF +D EIE  F+RNRR+R++R      N+ NN+  P  QA Q  N  Y+AH+ DRPIRS  +PNLY FNPGI YP FGEN
Subjt:  MSEGEQPKFELDPEIELTFRRNRRRRRQRNAQRMENN-NNRNVPPQQAAQEQNAAYMAHDLDRPIRSYAAPNLYNFNPGIAYPVFGEN

TYK29856.1 hypothetical protein E5676_scaffold208G001000 [Cucumis melo var. makuwa]1.7e-1264.18Show/hide
Query:  IKATLDTMANNNEEWDEDDFNNRRGGRGRSDEGMDKNAVVALKGRMTAMNNLLKSMAISQVNVVGSS
        IKA+LD+M NNNEE D+DDF + R GRG+++EG+D N VVAL+G+M AMNNLL+S+ +SQVNV  SS
Subjt:  IKATLDTMANNNEEWDEDDFNNRRGGRGRSDEGMDKNAVVALKGRMTAMNNLLKSMAISQVNVVGSS

TrEMBL top hitse value%identityAlignment
A0A5A7SYS5 Uncharacterized protein2.1e-1365.67Show/hide
Query:  IKATLDTMANNNEEWDEDDFNNRRGGRGRSDEGMDKNAVVALKGRMTAMNNLLKSMAISQVNVVGSS
        IKATLD+M NNNEE D+DDF + R GRG+++EG+D N VVAL+G+MT MNNLL+S+ +SQVNV  SS
Subjt:  IKATLDTMANNNEEWDEDDFNNRRGGRGRSDEGMDKNAVVALKGRMTAMNNLLKSMAISQVNVVGSS

A0A5A7UDN8 Uncharacterized protein9.0e-1270.59Show/hide
Query:  NNRNVPPQQAAQEQNAAYMAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENI
        NN+N P  Q  QEQN AY+AHDLD+PI+SYA+PNLY+FNPGIAY  FGEN+
Subjt:  NNRNVPPQQAAQEQNAAYMAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENI

A0A5A7UXZ2 Retrovirus-related Pol polyprotein from transposon 17.69.2e-1759.09Show/hide
Query:  MSEGEQPKFELDPEIELTFRRNRRRRRQRNAQRMENN-NNRNVPPQQAAQEQNAAYMAHDLDRPIRSYAAPNLYNFNPGIAYPVFGEN
        MSEGEQPKF +D EIE  F+RNRR+R++R      N+ NN+  P  QA Q  N  Y+AH+ DRPIRS  +PNLY FNPGI YP FGEN
Subjt:  MSEGEQPKFELDPEIELTFRRNRRRRRQRNAQRMENN-NNRNVPPQQAAQEQNAAYMAHDLDRPIRSYAAPNLYNFNPGIAYPVFGEN

A0A5D3CAB5 Retrovirus-related Pol polyprotein from transposon 17.69.2e-1759.09Show/hide
Query:  MSEGEQPKFELDPEIELTFRRNRRRRRQRNAQRMENN-NNRNVPPQQAAQEQNAAYMAHDLDRPIRSYAAPNLYNFNPGIAYPVFGEN
        MSEGEQPKF +D EIE  F+RNRR+R++R      N+ NN+  P  QA Q  N  Y+AH+ DRPIRS  +PNLY FNPGI YP FGEN
Subjt:  MSEGEQPKFELDPEIELTFRRNRRRRRQRNAQRMENN-NNRNVPPQQAAQEQNAAYMAHDLDRPIRSYAAPNLYNFNPGIAYPVFGEN

A0A5D3E1V8 Uncharacterized protein8.1e-1364.18Show/hide
Query:  IKATLDTMANNNEEWDEDDFNNRRGGRGRSDEGMDKNAVVALKGRMTAMNNLLKSMAISQVNVVGSS
        IKA+LD+M NNNEE D+DDF + R GRG+++EG+D N VVAL+G+M AMNNLL+S+ +SQVNV  SS
Subjt:  IKATLDTMANNNEEWDEDDFNNRRGGRGRSDEGMDKNAVVALKGRMTAMNNLLKSMAISQVNVVGSS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGAAGGTGAACAACCAAAATTTGAACTTGACCCTGAAATTGAACTAACCTTTCGGCGTAATAGAAGAAGAAGGAGGCAGAGAAACGCACAAAGAATGGAGAACAA
CAATAACAGAAATGTGCCGCCTCAGCAAGCTGCCCAAGAACAGAATGCCGCCTACATGGCGCATGATTTAGACAGACCAATTAGATCTTATGCCGCACCCAACCTTTATA
ACTTCAACCCAGGAATCGCCTACCCTGTGTTCGGCGAGAACATAAAGGCGACGCTAGATACAATGGCCAACAATAATGAAGAATGGGATGAAGATGATTTCAACAATCGC
CGAGGAGGACGAGGAAGAAGTGATGAAGGAATGGATAAGAACGCCGTGGTGGCGTTGAAAGGACGAATGACTGCGATGAACAATCTTTTAAAATCAATGGCAATATCGCA
GGTTAATGTCGTCGGAAGCTCCGTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTGAAGGTGAACAACCAAAATTTGAACTTGACCCTGAAATTGAACTAACCTTTCGGCGTAATAGAAGAAGAAGGAGGCAGAGAAACGCACAAAGAATGGAGAACAA
CAATAACAGAAATGTGCCGCCTCAGCAAGCTGCCCAAGAACAGAATGCCGCCTACATGGCGCATGATTTAGACAGACCAATTAGATCTTATGCCGCACCCAACCTTTATA
ACTTCAACCCAGGAATCGCCTACCCTGTGTTCGGCGAGAACATAAAGGCGACGCTAGATACAATGGCCAACAATAATGAAGAATGGGATGAAGATGATTTCAACAATCGC
CGAGGAGGACGAGGAAGAAGTGATGAAGGAATGGATAAGAACGCCGTGGTGGCGTTGAAAGGACGAATGACTGCGATGAACAATCTTTTAAAATCAATGGCAATATCGCA
GGTTAATGTCGTCGGAAGCTCCGTGTAG
Protein sequenceShow/hide protein sequence
MSEGEQPKFELDPEIELTFRRNRRRRRQRNAQRMENNNNRNVPPQQAAQEQNAAYMAHDLDRPIRSYAAPNLYNFNPGIAYPVFGENIKATLDTMANNNEEWDEDDFNNR
RGGRGRSDEGMDKNAVVALKGRMTAMNNLLKSMAISQVNVVGSSV