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PI0004309 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004309
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTy3/gypsy retrotransposon protein
Genome locationchr03:19376444..19376872
RNA-Seq ExpressionPI0004309
SyntenyPI0004309
Gene Ontology termsGO:0032456 - endocytic recycling (biological process)
GO:0042147 - retrograde transport, endosome to Golgi (biological process)
GO:0005829 - cytosol (cellular component)
GO:1990745 - EARP complex (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0041225.1 uncharacterized protein E6C27_scaffold128G001860 [Cucumis melo var. makuwa]7.9e-3962.41Show/hide
Query:  MVNKQMDERLENTEKEVMGLKEMMLEMKKAFDRLSEDLKEGSSYRKREESET-------------------------VDRSKYKKLEMPLFVGENPESWV
        M  +QM+ERLE TEKEV+ LKEMMLEMKK+ DRL+++L+E  SY+K+EES T                         VDRSKYKKLEMP+F+GENPESWV
Subjt:  MVNKQMDERLENTEKEVMGLKEMMLEMKKAFDRLSEDLKEGSSYRKREESET-------------------------VDRSKYKKLEMPLFVGENPESWV

Query:  YRAGHFFEINELNETEKVKVAVVSFGQDEINWFRWSNNRKK
        YRA HFFEIN L E EKVKVAVVSFGQDE++W+RWS+NRKK
Subjt:  YRAGHFFEINELNETEKVKVAVVSFGQDEINWFRWSNNRKK

KAA0065912.1 syndetin [Cucumis melo var. makuwa]9.3e-4072.27Show/hide
Query:  MVNKQMDERLENTEKEVMGLKEMMLEMKKAFDRLSEDLKEGSSYRKREES---ETVDRSKYKKLEMPLFVGENPESWVYRAGHFFEINELNETEKVKVAV
        M  +  +ER+E TEKEV+ L+EMMLEMKK+ DRLSE+++E  SYRKREES    TVDRSKYKKLEMP+F+GENPESWV+RA HFF+IN L ETEKVKVAV
Subjt:  MVNKQMDERLENTEKEVMGLKEMMLEMKKAFDRLSEDLKEGSSYRKREES---ETVDRSKYKKLEMPLFVGENPESWVYRAGHFFEINELNETEKVKVAV

Query:  VSFGQDEINWFRWSNNRKK
        VSFGQDE++W+RWS+NRKK
Subjt:  VSFGQDEINWFRWSNNRKK

TYK15104.1 syndetin [Cucumis melo var. makuwa]9.3e-4072.27Show/hide
Query:  MVNKQMDERLENTEKEVMGLKEMMLEMKKAFDRLSEDLKEGSSYRKREES---ETVDRSKYKKLEMPLFVGENPESWVYRAGHFFEINELNETEKVKVAV
        M  +  +ER+E TEKEV+ L+EMMLEMKK+ DRLSE+++E  SYRKREES    TVDRSKYKKLEMP+F+GENPESWV+RA HFF+IN L ETEKVKVAV
Subjt:  MVNKQMDERLENTEKEVMGLKEMMLEMKKAFDRLSEDLKEGSSYRKREES---ETVDRSKYKKLEMPLFVGENPESWVYRAGHFFEINELNETEKVKVAV

Query:  VSFGQDEINWFRWSNNRKK
        VSFGQDE++W+RWS+NRKK
Subjt:  VSFGQDEINWFRWSNNRKK

TYK16028.1 uncharacterized protein E5676_scaffold32G00230 [Cucumis melo var. makuwa]7.9e-3962.41Show/hide
Query:  MVNKQMDERLENTEKEVMGLKEMMLEMKKAFDRLSEDLKEGSSYRKREESET-------------------------VDRSKYKKLEMPLFVGENPESWV
        M  +QM+ERLE TEKEV+ LKEMMLEMKK+ DRL+++L+E  SY+K+EES T                         VDRSKYKKLEMP+F+GENPESWV
Subjt:  MVNKQMDERLENTEKEVMGLKEMMLEMKKAFDRLSEDLKEGSSYRKREESET-------------------------VDRSKYKKLEMPLFVGENPESWV

Query:  YRAGHFFEINELNETEKVKVAVVSFGQDEINWFRWSNNRKK
        YRA HFFEIN L E EKVKVAVVSFGQDE++W+RWS+NRKK
Subjt:  YRAGHFFEINELNETEKVKVAVVSFGQDEINWFRWSNNRKK

XP_031745528.1 uncharacterized protein LOC116405915 [Cucumis sativus]8.7e-3859.57Show/hide
Query:  MVNKQMDERLENTEKEVMGLKEMMLEMKKAFDRLSEDLKEGSSYRKREESETV-------------------------DRSKYKKLEMPLFVGENPESWV
        M  +Q+++R++ TEKE+MGLKEM+LEMKKA +R++EDL+E  SY++REES T                          DRSKYKKLEMP+F+GENPESWV
Subjt:  MVNKQMDERLENTEKEVMGLKEMMLEMKKAFDRLSEDLKEGSSYRKREESETV-------------------------DRSKYKKLEMPLFVGENPESWV

Query:  YRAGHFFEINELNETEKVKVAVVSFGQDEINWFRWSNNRKK
        YRA HFFEIN L ETEKVKVAVVSFGQDE++W+RWS+NR+K
Subjt:  YRAGHFFEINELNETEKVKVAVVSFGQDEINWFRWSNNRKK

TrEMBL top hitse value%identityAlignment
A0A5A7TII1 Uncharacterized protein3.8e-3962.41Show/hide
Query:  MVNKQMDERLENTEKEVMGLKEMMLEMKKAFDRLSEDLKEGSSYRKREESET-------------------------VDRSKYKKLEMPLFVGENPESWV
        M  +QM+ERLE TEKEV+ LKEMMLEMKK+ DRL+++L+E  SY+K+EES T                         VDRSKYKKLEMP+F+GENPESWV
Subjt:  MVNKQMDERLENTEKEVMGLKEMMLEMKKAFDRLSEDLKEGSSYRKREESET-------------------------VDRSKYKKLEMPLFVGENPESWV

Query:  YRAGHFFEINELNETEKVKVAVVSFGQDEINWFRWSNNRKK
        YRA HFFEIN L E EKVKVAVVSFGQDE++W+RWS+NRKK
Subjt:  YRAGHFFEINELNETEKVKVAVVSFGQDEINWFRWSNNRKK

A0A5A7VC68 Syndetin4.5e-4072.27Show/hide
Query:  MVNKQMDERLENTEKEVMGLKEMMLEMKKAFDRLSEDLKEGSSYRKREES---ETVDRSKYKKLEMPLFVGENPESWVYRAGHFFEINELNETEKVKVAV
        M  +  +ER+E TEKEV+ L+EMMLEMKK+ DRLSE+++E  SYRKREES    TVDRSKYKKLEMP+F+GENPESWV+RA HFF+IN L ETEKVKVAV
Subjt:  MVNKQMDERLENTEKEVMGLKEMMLEMKKAFDRLSEDLKEGSSYRKREES---ETVDRSKYKKLEMPLFVGENPESWVYRAGHFFEINELNETEKVKVAV

Query:  VSFGQDEINWFRWSNNRKK
        VSFGQDE++W+RWS+NRKK
Subjt:  VSFGQDEINWFRWSNNRKK

A0A5D3CVZ5 Syndetin4.5e-4072.27Show/hide
Query:  MVNKQMDERLENTEKEVMGLKEMMLEMKKAFDRLSEDLKEGSSYRKREES---ETVDRSKYKKLEMPLFVGENPESWVYRAGHFFEINELNETEKVKVAV
        M  +  +ER+E TEKEV+ L+EMMLEMKK+ DRLSE+++E  SYRKREES    TVDRSKYKKLEMP+F+GENPESWV+RA HFF+IN L ETEKVKVAV
Subjt:  MVNKQMDERLENTEKEVMGLKEMMLEMKKAFDRLSEDLKEGSSYRKREES---ETVDRSKYKKLEMPLFVGENPESWVYRAGHFFEINELNETEKVKVAV

Query:  VSFGQDEINWFRWSNNRKK
        VSFGQDE++W+RWS+NRKK
Subjt:  VSFGQDEINWFRWSNNRKK

A0A5D3CXP0 Uncharacterized protein3.8e-3962.41Show/hide
Query:  MVNKQMDERLENTEKEVMGLKEMMLEMKKAFDRLSEDLKEGSSYRKREESET-------------------------VDRSKYKKLEMPLFVGENPESWV
        M  +QM+ERLE TEKEV+ LKEMMLEMKK+ DRL+++L+E  SY+K+EES T                         VDRSKYKKLEMP+F+GENPESWV
Subjt:  MVNKQMDERLENTEKEVMGLKEMMLEMKKAFDRLSEDLKEGSSYRKREESET-------------------------VDRSKYKKLEMPLFVGENPESWV

Query:  YRAGHFFEINELNETEKVKVAVVSFGQDEINWFRWSNNRKK
        YRA HFFEIN L E EKVKVAVVSFGQDE++W+RWS+NRKK
Subjt:  YRAGHFFEINELNETEKVKVAVVSFGQDEINWFRWSNNRKK

A0A5D3DVI3 Uncharacterized protein7.2e-3859.86Show/hide
Query:  MVNKQMDERLENTEKEVMGLKEMMLEMKKAFDRLSEDLKEGSSYRKREESET-------------------------VDRSKYKKLEMPLFVGENPESWV
        M  +QM+ERLE T+KEV+ LKEMMLEMKK+ DR +++L+E  SY+K+EES T                         VDRSKYKKLEMP+F+GENPESWV
Subjt:  MVNKQMDERLENTEKEVMGLKEMMLEMKKAFDRLSEDLKEGSSYRKREESET-------------------------VDRSKYKKLEMPLFVGENPESWV

Query:  YRAGHFFEINELNETEKVKVAVVSFGQDEINWFRWSNNRKKS
        YRA HFFEIN L+E EKVKVAVVSFG+DE++W+RWS+NRKK+
Subjt:  YRAGHFFEINELNETEKVKVAVVSFGQDEINWFRWSNNRKKS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTAAACAAGCAAATGGACGAACGACTGGAGAATACAGAGAAAGAAGTCATGGGTTTGAAAGAGATGATGCTGGAAATGAAAAAGGCTTTCGATCGGCTATCTGAAGA
CCTGAAGGAGGGAAGTTCTTACAGAAAAAGAGAGGAATCAGAGACAGTGGACAGAAGTAAGTATAAAAAGCTGGAAATGCCCCTGTTTGTGGGAGAGAATCCGGAATCTT
GGGTGTATAGAGCTGGACATTTTTTTGAGATTAATGAACTGAATGAAACAGAGAAGGTAAAGGTTGCGGTTGTTAGTTTTGGACAAGATGAAATCAACTGGTTTAGATGG
TCCAACAACAGAAAAAAAAGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGGTAAACAAGCAAATGGACGAACGACTGGAGAATACAGAGAAAGAAGTCATGGGTTTGAAAGAGATGATGCTGGAAATGAAAAAGGCTTTCGATCGGCTATCTGAAGA
CCTGAAGGAGGGAAGTTCTTACAGAAAAAGAGAGGAATCAGAGACAGTGGACAGAAGTAAGTATAAAAAGCTGGAAATGCCCCTGTTTGTGGGAGAGAATCCGGAATCTT
GGGTGTATAGAGCTGGACATTTTTTTGAGATTAATGAACTGAATGAAACAGAGAAGGTAAAGGTTGCGGTTGTTAGTTTTGGACAAGATGAAATCAACTGGTTTAGATGG
TCCAACAACAGAAAAAAAAGTTGA
Protein sequenceShow/hide protein sequence
MVNKQMDERLENTEKEVMGLKEMMLEMKKAFDRLSEDLKEGSSYRKREESETVDRSKYKKLEMPLFVGENPESWVYRAGHFFEINELNETEKVKVAVVSFGQDEINWFRW
SNNRKKS