; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0004313 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004313
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr06:19799031..19799942
RNA-Seq ExpressionPI0004313
SyntenyPI0004313
Gene Ontology termsNA
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
WP_217833177.1 retrotransposon gag domain-containing protein, partial [Synechococcus sp. PCC 7002]3.2e-5447.3Show/hide
Query:  MSDSEQPPFELDPKIERTFQSNWRRARQRQARRLENNNRNA-----------------PPPHADPEPNAAYIAHDLDRPIRSYAAPNLYNFKPGIAYLTF
        MS+ + P F++DP+IERTF+   R+ +QR++ +    N +A                    HA+ + N   +AHD +RP+R YA+PNLYNF PGI   TF
Subjt:  MSDSEQPPFELDPKIERTFQSNWRRARQRQARRLENNNRNA-----------------PPPHADPEPNAAYIAHDLDRPIRSYAAPNLYNFKPGIAYLTF

Query:  GENARFEIKHVMLQMIQNAGQFGGHTGEDPHEHIRSFYSICASFHMPGISPEELRFTLFPLTLRDEAKRWANALEDGELETWDQLIEKFMKKYFPPHENA
          N RFE+K VMLQM+Q AGQFGG TGEDPH H++SF  IC++F M G+  + +R TLFP +LRDEA++WA + E GE+ TW +++EKFM+KYFPP  +A
Subjt:  GENARFEIKHVMLQMIQNAGQFGGHTGEDPHEHIRSFYSICASFHMPGISPEELRFTLFPLTLRDEAKRWANALEDGELETWDQLIEKFMKKYFPPHENA

Query:  RRRKELMSFQQKDRENLHDAWS
        +RR+++++F+QKD E   +AW+
Subjt:  RRRKELMSFQQKDRENLHDAWS

XP_017233063.1 PREDICTED: uncharacterized protein LOC108207110 [Daucus carota subsp. sativus]4.1e-3834.07Show/hide
Query:  MSDSEQPPFELDPKIERTFQSNWRRARQRQARR----LENNNRNAPPPHADPEPNAAYIAHDLDRPIRSYAAPNLYNFKPGIAYLTFGENARFEIKHVML
        MS      F  DP+IERTF  N RR  QR+ ++    +++N  N   P     P  A+I  D DR IR YAAP       GI      +  +FE+K VM 
Subjt:  MSDSEQPPFELDPKIERTFQSNWRRARQRQARR----LENNNRNAPPPHADPEPNAAYIAHDLDRPIRSYAAPNLYNFKPGIAYLTFGENARFEIKHVML

Query:  QMIQNAGQFGGHTGEDPHEHIRSFYSICASFHMPGISPEELRFTLFPLTLRDEAKRWANALEDGELETWDQLIEKFMKKYFPPHENARRRKELMSFQQKD
        QM+Q  GQF G   EDPH H+R F  I  SF   G+  + LR  LFP ++RD A+ W N+L  G + TW+ L EKF+ KYFPP+ NA+ R E+ SFQQ+D
Subjt:  QMIQNAGQFGGHTGEDPHEHIRSFYSICASFHMPGISPEELRFTLFPLTLRDEAKRWANALEDGELETWDQLIEKFMKKYFPPHENARRRKELMSFQQKD

Query:  RENLHDAW-------------------------------------SYTTDGMLKSTYNQIKTTLDTMASNNEEWDEDDFGNRRGGRSKGDECMDKNAVVA
         E+L+DAW                                     +     +L  +YNQ    L+T+A+ N +W      +R     K     D +++ +
Subjt:  RENLHDAW-------------------------------------SYTTDGMLKSTYNQIKTTLDTMASNNEEWDEDDFGNRRGGRSKGDECMDKNAVVA

Query:  LQGQMTAMNNLLKSMAI
        ++ Q+ +M ++LK++++
Subjt:  LQGQMTAMNNLLKSMAI

XP_030508936.1 uncharacterized protein LOC115723589 [Cannabis sativa]1.1e-3835.88Show/hide
Query:  LDPKIERTFQSNWRRARQRQARRLENNNRNAPPPHADPEPNAAYIAHDLDRPIRSYAAPNLYNFKPGIAYLTFGENARFEIKHVMLQMIQNAGQFGGHTG
        +DP+IERTF+   +R ++++A++  N            E N   +A D  R IR YAAP      PGI      +   FE+K VM QM+Q  GQFGG   
Subjt:  LDPKIERTFQSNWRRARQRQARRLENNNRNAPPPHADPEPNAAYIAHDLDRPIRSYAAPNLYNFKPGIAYLTFGENARFEIKHVMLQMIQNAGQFGGHTG

Query:  EDPHEHIRSFYSICASFHMPGISPEELRFTLFPLTLRDEAKRWANALEDGELETWDQLIEKFMKKYFPPHENARRRKELMSFQQKDRENLHDAW------
        EDPH HIRSF  +  SF + G+S E LR  LFP +LRD A+ W N L    +  W+ L EKF++KYFPP  NA+ R E+MSFQQ + E   DAW      
Subjt:  EDPHEHIRSFYSICASFHMPGISPEELRFTLFPLTLRDEAKRWANALEDGELETWDQLIEKFMKKYFPPHENARRRKELMSFQQKDRENLHDAW------

Query:  -------------------------------SYTTDGMLKSTYNQIKTTLDTMASNNEEWDEDDFGNRRGGRSKGDECMDKNAVVALQGQMTAMNNLLKS
                                       ++    +L  +YN+    L+ +ASNN +W      NR     K    ++ +A+ AL  QM +M N+LK+
Subjt:  -------------------------------SYTTDGMLKSTYNQIKTTLDTMASNNEEWDEDDFGNRRGGRSKGDECMDKNAVVALQGQMTAMNNLLKS

Query:  M
        M
Subjt:  M

XP_038880527.1 uncharacterized protein LOC120072192 [Benincasa hispida]4.3e-4338.7Show/hide
Query:  IAHDLDRPIRSYAAPNLYNFKPGIAYLTFGENARFEIKHVMLQMIQNAGQFGGHTGEDPHEHIRSFYSICASFHMPGISPEELRFTLFPLTLRDEAKRWA
        +A++  RP+R YA+P LY+F PGI Y    +  RFE+K VMLQM+Q A QFGG  GEDPH H++ F   C  F +P I+PE++R +LFP +LRD+AK+W 
Subjt:  IAHDLDRPIRSYAAPNLYNFKPGIAYLTFGENARFEIKHVMLQMIQNAGQFGGHTGEDPHEHIRSFYSICASFHMPGISPEELRFTLFPLTLRDEAKRWA

Query:  NALEDGELETWDQLIEKFMKKYFPPHENARRRKELMSFQQKDRENLHDAW-------------------------------------SYTTDGMLKSTYN
        ++LE  E+ TW++L+EKFM+KYFPP  NARRR+E+M+F+Q+D E L  A                                      +   +G++  +Y 
Subjt:  NALEDGELETWDQLIEKFMKKYFPPHENARRRKELMSFQQKDRENLHDAW-------------------------------------SYTTDGMLKSTYN

Query:  QIKTTLDTMASNNEEWDEDDFGNR--RGGRSKGDECMDKNAVVALQGQMTAMNNLLKSMAI
        + K  L  +A +N EW +D +  R  R  RS+    +D NA+  L  Q+  M +LL+++ +
Subjt:  QIKTTLDTMASNNEEWDEDDFGNR--RGGRSKGDECMDKNAVVALQGQMTAMNNLLKSMAI

XP_038887458.1 uncharacterized protein LOC120077591 [Benincasa hispida]8.3e-4737.3Show/hide
Query:  MSDSEQPPFELDPKIERTF--QSNWRRARQRQARRLENNNRNAPPPHAD---PEPNAAYIAHDLDRPIRSYAAPNLYNFKPGIAYLTFGENARFEIKHVM
        MS    P FE +P+I+ TF  +++  RA +R+    +NNN  AP  +     P  +  ++A D + PIR+YAAPNLY+F PGI+     ENARFEIK VM
Subjt:  MSDSEQPPFELDPKIERTF--QSNWRRARQRQARRLENNNRNAPPPHAD---PEPNAAYIAHDLDRPIRSYAAPNLYNFKPGIAYLTFGENARFEIKHVM

Query:  LQMIQNAGQFGGHTGEDPHEHIRSFYSICASFHMPGISPEELRFTLFPLTLRDEAKRWANALEDGELETWDQLIEKFMKKYFPPHENARRRKELMSFQQK
        +QMIQN  QF     E+PH H+  F  +C++F +PGI+P  +R  LFP TLRD+AKRWA++LE  E+ + DQL+E FMKK+FPP  N RRRK +++F++ 
Subjt:  LQMIQNAGQFGGHTGEDPHEHIRSFYSICASFHMPGISPEELRFTLFPLTLRDEAKRWANALEDGELETWDQLIEKFMKKYFPPHENARRRKELMSFQQK

Query:  DRENLHDAW-------------------------------------SYTTDGMLKSTYNQIKTTLDTMASNNEEWDEDDFGNRRGGRSKGDEC-MDKNAV
        D E L  AW                                     +   +  +  TY + K  LD ++ N ++W +D +  R   R + D   +  N +
Subjt:  DRENLHDAW-------------------------------------SYTTDGMLKSTYNQIKTTLDTMASNNEEWDEDDFGNRRGGRSKGDEC-MDKNAV

Query:  VALQGQMTAMNNLLKSMAI
          L  QM  + +LL+ MA+
Subjt:  VALQGQMTAMNNLLKSMAI

TrEMBL top hitse value%identityAlignment
A0A5A7V2U7 Putative disease resistance RPP13-like protein 14.3e-3368.52Show/hide
Query:  NNRNAPPPHADPEPNAAYIAHDLDRPIRSYAAPNLYNFKPGIAYLTFGENARFEIKHVMLQMIQNAGQFGGHTGEDPHEHIRSFYSICASFHMPGISPEE
        NN+  P   A    N  Y+A D DRPIRSYA+PNLY+F PGIAY TF EN RFEIK VMLQ+IQNAGQF  H  +DPH++IR+FYSICASFHMPGIS EE
Subjt:  NNRNAPPPHADPEPNAAYIAHDLDRPIRSYAAPNLYNFKPGIAYLTFGENARFEIKHVMLQMIQNAGQFGGHTGEDPHEHIRSFYSICASFHMPGISPEE

Query:  LRFTLFPL
        LRFT F L
Subjt:  LRFTLFPL

A0A6J1DW02 uncharacterized protein LOC1110248971.2e-3031.56Show/hide
Query:  LDPKIERTFQSNWRRARQRQARRLENNNRN-----------------APPPHADP-----------------EPNAAYIAHDLDRPIRSYAAPNLYNFKP
        LDP+IERT +    R  QR  ++LE                      A  P  DP                 E N   +A + D  +R YAA    NF  
Subjt:  LDPKIERTFQSNWRRARQRQARRLENNNRN-----------------APPPHADP-----------------EPNAAYIAHDLDRPIRSYAAPNLYNFKP

Query:  GIAYLTFGENARFEIKHVMLQMIQNAGQFGGHTGEDPHEHIRSFYSICASFHMPGISPEELRFTLFPLTLRDEAKRWANALEDGELETWDQLIEKFMKKY
        GI       +  FE+K +M QM+Q  G FGG   EDPH+H++SF  I  +F +PGI+ +    TLFP +L+D+A+   NA   G + TW  L+EKF+ K+
Subjt:  GIAYLTFGENARFEIKHVMLQMIQNAGQFGGHTGEDPHEHIRSFYSICASFHMPGISPEELRFTLFPLTLRDEAKRWANALEDGELETWDQLIEKFMKKY

Query:  FPPHENARRRKELMSFQQKDRENLHDAW----------------------------SYTTDGML---------KSTYNQIKTTLDTMASNNEEWDEDDFG
        FPP  +A  R+E++SF+Q DRE +H+AW                             + T  ML         K T+N+I   L+ +AS+NE W      
Subjt:  FPPHENARRRKELMSFQQKDRENLHDAW----------------------------SYTTDGML---------KSTYNQIKTTLDTMASNNEEWDEDDFG

Query:  NRRGGRSKGDEC--MDKNAVVALQGQMTAMNNLLKSMAI
          R    K D    +  +   ++Q +M  MN  LK MA+
Subjt:  NRRGGRSKGDEC--MDKNAVVALQGQMTAMNNLLKSMAI

A0A6J1EEI2 uncharacterized protein LOC1114333941.8e-3132.32Show/hide
Query:  NAAYIAHDLDRPIRSYAAPNLYNFKPGIAYLTFGENARFEIKHVMLQMIQNAGQFGGHTGEDPHEHIRSFYSICASFHMPGISPEELRFTLFPLTLRDEA
        NA ++A D +R IR+YA P +    P I      +   FE+K VM QM+Q  GQF G   EDPH H++SF  +  SF    +  + +R +LFP +LRD A
Subjt:  NAAYIAHDLDRPIRSYAAPNLYNFKPGIAYLTFGENARFEIKHVMLQMIQNAGQFGGHTGEDPHEHIRSFYSICASFHMPGISPEELRFTLFPLTLRDEA

Query:  KRWANALEDGELETWDQLIEKFMKKYFPPHENARRRKELMSFQQKDRENLHDAW-------------------------------------SYTTDGMLK
        K W N L  G +++W+ L+EKF+ KYFPP  NAR R E++ FQQ + + L +AW                                     +     +L 
Subjt:  KRWANALEDGELETWDQLIEKFMKKYFPPHENARRRKELMSFQQKDRENLHDAW-------------------------------------SYTTDGMLK

Query:  STYNQIKTTLDTMASNNEEWDEDDFGNRRGGRSKGDECMDKNAVVALQGQMTAMNNLLKSMAI
         TYN+    L+ +ASNN +W   D  +  G +++G   ++ +A+ ++  Q+ ++ N+L+++A+
Subjt:  STYNQIKTTLDTMASNNEEWDEDDFGNRRGGRSKGDECMDKNAVVALQGQMTAMNNLLKSMAI

A0A6J1H7E4 uncharacterized protein LOC1114611688.2e-3233.21Show/hide
Query:  NAAYIAHDLDRPIRSYAAPNLYNFKPGIAYLTFGENARFEIKHVMLQMIQNAGQFGGHTGEDPHEHIRSFYSICASFHMPGISPEELRFTLFPLTLRDEA
        NA  +A D +R IR+YA P +    P I      +   FE+K VM QM+Q  GQF G   EDPH H++SF  +  SF   G+  + +R +LFP +LRD A
Subjt:  NAAYIAHDLDRPIRSYAAPNLYNFKPGIAYLTFGENARFEIKHVMLQMIQNAGQFGGHTGEDPHEHIRSFYSICASFHMPGISPEELRFTLFPLTLRDEA

Query:  KRWANALEDGELETWDQLIEKFMKKYFPPHENARRRKELMSFQQKDRENLHDAW-------------------------------------SYTTDGMLK
        K W N L    +++W+ L EKF+ KYFPP  NAR R E+++FQQ + E L +AW                                     +     ML 
Subjt:  KRWANALEDGELETWDQLIEKFMKKYFPPHENARRRKELMSFQQKDRENLHDAW-------------------------------------SYTTDGMLK

Query:  STYNQIKTTLDTMASNNEEWDEDDFGNRRGGRSKGDECMDKNAVVALQGQMTAMNNLLKSMA
         TYN+    L+ +ASNN +W   D  +  G +++G   ++ +A+ ++  Q+ ++ N+L+++A
Subjt:  STYNQIKTTLDTMASNNEEWDEDDFGNRRGGRSKGDECMDKNAVVALQGQMTAMNNLLKSMA

U5CUI2 Retrotrans_gag domain-containing protein7.1e-3636.12Show/hide
Query:  NAAYIAHDLDRPIRSYAAPNLYNFKPGIAYLTFGENARFEIKHVMLQMIQNAGQFGGHTGEDPHEHIRSFYSICASFHMPGISPEELRFTLFPLTLRDEA
        N   +A D  R IR YAAP      PGI      +  +FE+K VM QM+Q  GQF G   EDPH H+RSF  +  SF + G+S E LR  LFP +LRD A
Subjt:  NAAYIAHDLDRPIRSYAAPNLYNFKPGIAYLTFGENARFEIKHVMLQMIQNAGQFGGHTGEDPHEHIRSFYSICASFHMPGISPEELRFTLFPLTLRDEA

Query:  KRWANALEDGELETWDQLIEKFMKKYFPPHENARRRKELMSFQQKDRENLHDAW-------------------------------------SYTTDGMLK
        + W N L    +  W+ L EKF++KYFPP  NA+ R E+MSFQQ + E+  DAW                                     +     +L 
Subjt:  KRWANALEDGELETWDQLIEKFMKKYFPPHENARRRKELMSFQQKDRENLHDAW-------------------------------------SYTTDGMLK

Query:  STYNQIKTTLDTMASNNEEWDEDDFGNRRGGRSKGDECMDKNAVVALQGQMTAMNNLLKSMAI
         +YN+    L+T+ASNN +W       R     K    ++ +A+ AL  QM +M N+LK+++I
Subjt:  STYNQIKTTLDTMASNNEEWDEDDFGNRRGGRSKGDECMDKNAVVALQGQMTAMNNLLKSMAI

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGTGATAGCGAACAACCACCATTCGAACTTGACCCTAAAATTGAGCGAACATTTCAGAGTAACTGGCGAAGAGCAAGGCAGAGACAAGCTAGAAGGTTGGAAAATAA
CAACAGAAATGCCCCTCCGCCGCATGCTGACCCAGAACCAAATGCTGCTTACATAGCACACGACTTGGATAGGCCAATTAGATCTTATGCGGCACCCAACCTCTACAACT
TTAAGCCAGGAATCGCCTACCTTACATTCGGCGAGAACGCCAGGTTTGAAATCAAACATGTTATGCTTCAGATGATTCAGAACGCTGGACAATTCGGCGGACATACTGGG
GAAGATCCACATGAACATATAAGGAGTTTCTACTCCATCTGCGCTTCCTTCCACATGCCAGGCATTTCACCTGAAGAATTGAGATTCACCCTCTTCCCGTTAACTCTGAG
GGATGAGGCGAAGAGGTGGGCAAATGCTCTGGAAGATGGCGAGCTGGAAACATGGGACCAACTAATAGAGAAATTTATGAAGAAATATTTTCCACCTCACGAAAACGCTA
GAAGAAGGAAGGAGCTTATGAGCTTTCAGCAGAAGGATAGAGAAAACCTACATGACGCGTGGAGCTACACAACAGACGGTATGCTAAAAAGTACATACAACCAGATTAAG
ACGACGCTGGATACGATGGCCAGCAACAATGAGGAATGGGATGAAGATGATTTCGGCAATCGCCGAGGAGGACGATCAAAAGGTGATGAATGCATGGATAAGAACGCCGT
GGTGGCGTTGCAAGGACAAATGACTGCGATGAACAATCTACTCAAATCAATGGCAATATTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGAGTGATAGCGAACAACCACCATTCGAACTTGACCCTAAAATTGAGCGAACATTTCAGAGTAACTGGCGAAGAGCAAGGCAGAGACAAGCTAGAAGGTTGGAAAATAA
CAACAGAAATGCCCCTCCGCCGCATGCTGACCCAGAACCAAATGCTGCTTACATAGCACACGACTTGGATAGGCCAATTAGATCTTATGCGGCACCCAACCTCTACAACT
TTAAGCCAGGAATCGCCTACCTTACATTCGGCGAGAACGCCAGGTTTGAAATCAAACATGTTATGCTTCAGATGATTCAGAACGCTGGACAATTCGGCGGACATACTGGG
GAAGATCCACATGAACATATAAGGAGTTTCTACTCCATCTGCGCTTCCTTCCACATGCCAGGCATTTCACCTGAAGAATTGAGATTCACCCTCTTCCCGTTAACTCTGAG
GGATGAGGCGAAGAGGTGGGCAAATGCTCTGGAAGATGGCGAGCTGGAAACATGGGACCAACTAATAGAGAAATTTATGAAGAAATATTTTCCACCTCACGAAAACGCTA
GAAGAAGGAAGGAGCTTATGAGCTTTCAGCAGAAGGATAGAGAAAACCTACATGACGCGTGGAGCTACACAACAGACGGTATGCTAAAAAGTACATACAACCAGATTAAG
ACGACGCTGGATACGATGGCCAGCAACAATGAGGAATGGGATGAAGATGATTTCGGCAATCGCCGAGGAGGACGATCAAAAGGTGATGAATGCATGGATAAGAACGCCGT
GGTGGCGTTGCAAGGACAAATGACTGCGATGAACAATCTACTCAAATCAATGGCAATATTGTAG
Protein sequenceShow/hide protein sequence
MSDSEQPPFELDPKIERTFQSNWRRARQRQARRLENNNRNAPPPHADPEPNAAYIAHDLDRPIRSYAAPNLYNFKPGIAYLTFGENARFEIKHVMLQMIQNAGQFGGHTG
EDPHEHIRSFYSICASFHMPGISPEELRFTLFPLTLRDEAKRWANALEDGELETWDQLIEKFMKKYFPPHENARRRKELMSFQQKDRENLHDAWSYTTDGMLKSTYNQIK
TTLDTMASNNEEWDEDDFGNRRGGRSKGDECMDKNAVVALQGQMTAMNNLLKSMAIL