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PI0004345 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004345
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr03:19844786..19846077
RNA-Seq ExpressionPI0004345
SyntenyPI0004345
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033247.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.1e-2467.61Show/hide
Query:  GGNMKVAKCGVCGFIGHPNDKCPDLVEEANVIRKYDPHGKTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQ
        G  +KV KCGVCG +GHPNDKCP ++E+ N++RKYDPHG TYN+GWRDNPNLRWGND Q+  QA   S+NQ
Subjt:  GGNMKVAKCGVCGFIGHPNDKCPDLVEEANVIRKYDPHGKTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQ
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.1e-2569.01Show/hide
Query:  GGNMKVAKCGVCGFIGHPNDKCPDLVEEANVIRKYDPHGKTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQ
        G  +KV KCGVCG +GHPNDKCP+++E+ N++RKYDPHG TYN+GWRDNPNLRWGND Q+  QA S S+NQ
Subjt:  GGNMKVAKCGVCGFIGHPNDKCPDLVEEANVIRKYDPHGKTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQ
KAA0051761.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.4e-2466.2Show/hide
Query:  GGNMKVAKCGVCGFIGHPNDKCPDLVEEANVIRKYDPHGKTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQ
        G  +KV KCGVCG +GHPNDKCP+++E+ N+++KYDPHG TYN+GWRDNPNLRWGND Q+  QA   S+NQ
Subjt:  GGNMKVAKCGVCGFIGHPNDKCPDLVEEANVIRKYDPHGKTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQ
TYK19600.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-2467.61Show/hide
Query:  GGNMKVAKCGVCGFIGHPNDKCPDLVEEANVIRKYDPHGKTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQ
        G  +KV KCGVCG +GHPNDKCP+++E+ N++RKYDPHG TYN+GWRDNPNLRWGND Q+  QA   S+NQ
Subjt:  GGNMKVAKCGVCGFIGHPNDKCPDLVEEANVIRKYDPHGKTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQ
XP_016902871.1 PREDICTED: uncharacterized protein LOC107991910 [Cucumis melo]2.4e-2466.2Show/hide
Query:  GGNMKVAKCGVCGFIGHPNDKCPDLVEEANVIRKYDPHGKTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQ
        G  +KV KCGVCG +GHPNDKCP+++E+ N+++KYDPHG TYN+GWRDNPNLRWGND Q+  QA   S+NQ
Subjt:  GGNMKVAKCGVCGFIGHPNDKCPDLVEEANVIRKYDPHGKTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQ
TrEMBL top hitse value%identityAlignment
A0A1S4E3R2 uncharacterized protein LOC1079919101.1e-2466.2Show/hide
Query:  GGNMKVAKCGVCGFIGHPNDKCPDLVEEANVIRKYDPHGKTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQ
        G  +KV KCGVCG +GHPNDKCP+++E+ N+++KYDPHG TYN+GWRDNPNLRWGND Q+  QA   S+NQ
Subjt:  GGNMKVAKCGVCGFIGHPNDKCPDLVEEANVIRKYDPHGKTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQ
A0A5A7SVA1 Retrotransposon gag protein1.5e-2467.61Show/hide
Query:  GGNMKVAKCGVCGFIGHPNDKCPDLVEEANVIRKYDPHGKTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQ
        G  +KV KCGVCG +GHPNDKCP ++E+ N++RKYDPHG TYN+GWRDNPNLRWGND Q+  QA   S+NQ
Subjt:  GGNMKVAKCGVCGFIGHPNDKCPDLVEEANVIRKYDPHGKTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQ
A0A5D3CRR8 Retrotransposon gag protein1.0e-2569.01Show/hide
Query:  GGNMKVAKCGVCGFIGHPNDKCPDLVEEANVIRKYDPHGKTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQ
        G  +KV KCGVCG +GHPNDKCP+++E+ N++RKYDPHG TYN+GWRDNPNLRWGND Q+  QA S S+NQ
Subjt:  GGNMKVAKCGVCGFIGHPNDKCPDLVEEANVIRKYDPHGKTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQ
A0A5D3D815 Retrotransposon gag protein6.7e-2567.61Show/hide
Query:  GGNMKVAKCGVCGFIGHPNDKCPDLVEEANVIRKYDPHGKTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQ
        G  +KV KCGVCG +GHPNDKCP+++E+ N++RKYDPHG TYN+GWRDNPNLRWGND Q+  QA   S+NQ
Subjt:  GGNMKVAKCGVCGFIGHPNDKCPDLVEEANVIRKYDPHGKTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQ
A0A5D3DCG3 Retrotransposon gag protein1.1e-2466.2Show/hide
Query:  GGNMKVAKCGVCGFIGHPNDKCPDLVEEANVIRKYDPHGKTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQ
        G  +KV KCGVCG +GHPNDKCP+++E+ N+++KYDPHG TYN+GWRDNPNLRWGND Q+  QA   S+NQ
Subjt:  GGNMKVAKCGVCGFIGHPNDKCPDLVEEANVIRKYDPHGKTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCGTTGCCGGGGAGCGACGGTGGAAATATGAAAGTTGCAAAATGTGGAGTTTGCGGTTTCATTGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCTCATGGAAAAACTTATAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACACCCAACGACCCGCACAAGCAACTT
CACCCTCAAATAATCAAGTAGTAATTTGGAAGATTTGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCGTTGCCGGGGAGCGACGGTGGAAATATGAAAGTTGCAAAATGTGGAGTTTGCGGTTTCATTGGACATCCTAATGACAAGTGTCCCGACCTTGTGGAAGAGGC
AAATGTCATTAGGAAGTACGATCCTCATGGAAAAACTTATAATGCCGGTTGGAGAGACAACCCTAACCTTAGATGGGGAAATGACACCCAACGACCCGCACAAGCAACTT
CACCCTCAAATAATCAAGTAGTAATTTGGAAGATTTGGTAA
Protein sequenceShow/hide protein sequence
MASLPGSDGGNMKVAKCGVCGFIGHPNDKCPDLVEEANVIRKYDPHGKTYNAGWRDNPNLRWGNDTQRPAQATSPSNNQVVIWKIW