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PI0004404 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004404
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr01:14044999..14046033
RNA-Seq ExpressionPI0004404
SyntenyPI0004404
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0037721.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]3.0e-3340.09Show/hide
Query:  MVAMFLHVLAHDVKNRVIQREFVRSDETVSRHFNLVLLAVLRLHDELLAKPQPVTSTCSDAWWRWF----------------------------------
        MVAMFLH++AHDVKNR+IQREFVRS ET SRHFNL LLAVLRLHDEL  KPQPVT+ C++  W+WF                                  
Subjt:  MVAMFLHVLAHDVKNRVIQREFVRSDETVSRHFNLVLLAVLRLHDELLAKPQPVTSTCSDAWWRWF----------------------------------

Query:  --------------------------------------------------------------------EMTNADIPDEVDEGDSTYATTGGEEIHYIETS
                                                                            EMTN++I D +DEGDSTY TTGG+EI+YIE S
Subjt:  --------------------------------------------------------------------EMTNADIPDEVDEGDSTYATTGGEEIHYIETS

Query:  SAWSQWRDELAERMFSDWELRN
        + WS+WRD+LA  MFSDWELR+
Subjt:  SAWSQWRDELAERMFSDWELRN

KAA0047074.1 retrotransposon protein [Cucumis melo var. makuwa]4.2e-3545.79Show/hide
Query:  MVAMFLHVLAHDVKNRVIQREFVRSDETVSRHFNLVLLAVLRLHDELLAKPQPVTSTCSDAWWRWFE---------MTNADIP-----------------
        MVAMFLH+LAHDVKNRVIQREF+RS ET+SRHFN+VLLAV+RLH+ELL KPQPV + C+D  WRWFE             ++P                 
Subjt:  MVAMFLHVLAHDVKNRVIQREFVRSDETVSRHFNLVLLAVLRLHDELLAKPQPVTSTCSDAWWRWFE---------MTNADIP-----------------

Query:  -------------------------------------------DEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWELRNQ
                                                   D +DE DST+ATT  ++IHYIETS+ WSQWRD+LAE MF++WELRNQ
Subjt:  -------------------------------------------DEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWELRNQ

KAA0060656.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]8.4e-3650Show/hide
Query:  MVAMFLHVLAHDVKNRVIQREFVRSDETVSRHFNLVLLAVLRLHDELLAKPQPVTSTCSDAWWRWF----------------------------------
        MVAMFLH++A+DVKNRVIQREF+R D+T+  HFN+VLLAV RLHDELL KPQPV + C++  WRWF                                  
Subjt:  MVAMFLHVLAHDVKNRVIQREFVRSDETVSRHFNLVLLAVLRLHDELLAKPQPVTSTCSDAWWRWF----------------------------------

Query:  ---------------EMTNADIPDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWELRNQ
                       E+TN DI D++DE DST+ATT   +IHYIETS  W+QWRD+LAE MFSDWEL NQ
Subjt:  ---------------EMTNADIPDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWELRNQ

TYK08389.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]2.7e-3441.55Show/hide
Query:  MVAMFLHVLAHDVKNRVIQREFVRSDETVSRHFNLVLLAVLRLHDELLAKPQPVTSTCSDAWWRWF----------------------------------
        MVAMFLH+LAHDVKNR+IQ+EF RS ETVSRHFN+VLLA+LRLHDELL KPQPVT++C+D  W+WF                                  
Subjt:  MVAMFLHVLAHDVKNRVIQREFVRSDETVSRHFNLVLLAVLRLHDELLAKPQPVTSTCSDAWWRWF----------------------------------

Query:  ----------------------------------------------------------------EMTNADIPDEVDEGDSTYATTGGEEIHYIETSSAWS
                                                                        EMTN +I D++DEGDSTYATTGG+EI+YIE S+ WS
Subjt:  ----------------------------------------------------------------EMTNADIPDEVDEGDSTYATTGGEEIHYIETSSAWS

Query:  QWRDELAERMFSDWELRNQ
        + RD+LA  MFSDWELR+Q
Subjt:  QWRDELAERMFSDWELRNQ

XP_008441953.1 PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo]2.7e-3441.55Show/hide
Query:  MVAMFLHVLAHDVKNRVIQREFVRSDETVSRHFNLVLLAVLRLHDELLAKPQPVTSTCSDAWWRWF----------------------------------
        MVAMFLH+LAHDVKNR+IQ+EF RS ETVSRHFN+VLLA+LRLHDELL KPQPVT++C+D  W+WF                                  
Subjt:  MVAMFLHVLAHDVKNRVIQREFVRSDETVSRHFNLVLLAVLRLHDELLAKPQPVTSTCSDAWWRWF----------------------------------

Query:  ----------------------------------------------------------------EMTNADIPDEVDEGDSTYATTGGEEIHYIETSSAWS
                                                                        EMTN +I D++DEGDSTYATTGG+EI+YIE S+ WS
Subjt:  ----------------------------------------------------------------EMTNADIPDEVDEGDSTYATTGGEEIHYIETSSAWS

Query:  QWRDELAERMFSDWELRNQ
        + RD+LA  MFSDWELR+Q
Subjt:  QWRDELAERMFSDWELRNQ

TrEMBL top hitse value%identityAlignment
A0A1S3B4J8 uncharacterized protein LOC1034859521.3e-3441.55Show/hide
Query:  MVAMFLHVLAHDVKNRVIQREFVRSDETVSRHFNLVLLAVLRLHDELLAKPQPVTSTCSDAWWRWF----------------------------------
        MVAMFLH+LAHDVKNR+IQ+EF RS ETVSRHFN+VLLA+LRLHDELL KPQPVT++C+D  W+WF                                  
Subjt:  MVAMFLHVLAHDVKNRVIQREFVRSDETVSRHFNLVLLAVLRLHDELLAKPQPVTSTCSDAWWRWF----------------------------------

Query:  ----------------------------------------------------------------EMTNADIPDEVDEGDSTYATTGGEEIHYIETSSAWS
                                                                        EMTN +I D++DEGDSTYATTGG+EI+YIE S+ WS
Subjt:  ----------------------------------------------------------------EMTNADIPDEVDEGDSTYATTGGEEIHYIETSSAWS

Query:  QWRDELAERMFSDWELRNQ
        + RD+LA  MFSDWELR+Q
Subjt:  QWRDELAERMFSDWELRNQ

A0A5A7U0J9 Putative nuclease HARBI11.3e-3441.55Show/hide
Query:  MVAMFLHVLAHDVKNRVIQREFVRSDETVSRHFNLVLLAVLRLHDELLAKPQPVTSTCSDAWWRWF----------------------------------
        MVAMFLH+LAHDVKNR+IQ+EF RS ETVSRHFN+VLLA+LRLHDELL KPQPVT++C+D  W+WF                                  
Subjt:  MVAMFLHVLAHDVKNRVIQREFVRSDETVSRHFNLVLLAVLRLHDELLAKPQPVTSTCSDAWWRWF----------------------------------

Query:  ----------------------------------------------------------------EMTNADIPDEVDEGDSTYATTGGEEIHYIETSSAWS
                                                                        EMTN +I D++DEGDSTYATTGG+EI+YIE S+ WS
Subjt:  ----------------------------------------------------------------EMTNADIPDEVDEGDSTYATTGGEEIHYIETSSAWS

Query:  QWRDELAERMFSDWELRNQ
        + RD+LA  MFSDWELR+Q
Subjt:  QWRDELAERMFSDWELRNQ

A0A5A7V2D2 Putative nuclease HARBI14.1e-3650Show/hide
Query:  MVAMFLHVLAHDVKNRVIQREFVRSDETVSRHFNLVLLAVLRLHDELLAKPQPVTSTCSDAWWRWF----------------------------------
        MVAMFLH++A+DVKNRVIQREF+R D+T+  HFN+VLLAV RLHDELL KPQPV + C++  WRWF                                  
Subjt:  MVAMFLHVLAHDVKNRVIQREFVRSDETVSRHFNLVLLAVLRLHDELLAKPQPVTSTCSDAWWRWF----------------------------------

Query:  ---------------EMTNADIPDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWELRNQ
                       E+TN DI D++DE DST+ATT   +IHYIETS  W+QWRD+LAE MFSDWEL NQ
Subjt:  ---------------EMTNADIPDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWELRNQ

A0A5D3BZB1 Retrotransposon protein2.0e-3545.79Show/hide
Query:  MVAMFLHVLAHDVKNRVIQREFVRSDETVSRHFNLVLLAVLRLHDELLAKPQPVTSTCSDAWWRWFE---------MTNADIP-----------------
        MVAMFLH+LAHDVKNRVIQREF+RS ET+SRHFN+VLLAV+RLH+ELL KPQPV + C+D  WRWFE             ++P                 
Subjt:  MVAMFLHVLAHDVKNRVIQREFVRSDETVSRHFNLVLLAVLRLHDELLAKPQPVTSTCSDAWWRWFE---------MTNADIP-----------------

Query:  -------------------------------------------DEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWELRNQ
                                                   D +DE DST+ATT  ++IHYIETS+ WSQWRD+LAE MF++WELRNQ
Subjt:  -------------------------------------------DEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAERMFSDWELRNQ

A0A5D3CDG6 Putative nuclease HARBI11.3e-3441.55Show/hide
Query:  MVAMFLHVLAHDVKNRVIQREFVRSDETVSRHFNLVLLAVLRLHDELLAKPQPVTSTCSDAWWRWF----------------------------------
        MVAMFLH+LAHDVKNR+IQ+EF RS ETVSRHFN+VLLA+LRLHDELL KPQPVT++C+D  W+WF                                  
Subjt:  MVAMFLHVLAHDVKNRVIQREFVRSDETVSRHFNLVLLAVLRLHDELLAKPQPVTSTCSDAWWRWF----------------------------------

Query:  ----------------------------------------------------------------EMTNADIPDEVDEGDSTYATTGGEEIHYIETSSAWS
                                                                        EMTN +I D++DEGDSTYATTGG+EI+YIE S+ WS
Subjt:  ----------------------------------------------------------------EMTNADIPDEVDEGDSTYATTGGEEIHYIETSSAWS

Query:  QWRDELAERMFSDWELRNQ
        + RD+LA  MFSDWELR+Q
Subjt:  QWRDELAERMFSDWELRNQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G41980.1 CONTAINS InterPro DOMAIN/s: Putative harbinger transposase-derived nuclease (InterPro:IPR006912)1.8e-0445.24Show/hide
Query:  VAMFLHVLAHDVKNRVIQREFVRSDETVSRHFNLVLLAVLRL
        +A+FL ++ H+++ R +Q  F  S ET+SRHFN VL AV+ +
Subjt:  VAMFLHVLAHDVKNRVIQREFVRSDETVSRHFNLVLLAVLRL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTCGCCATGTTCCTTCACGTACTGGCGCACGACGTGAAAAATCGTGTGATTCAACGTGAGTTTGTGCGGTCCGATGAGACTGTTTCACGTCATTTCAATCTTGTACT
GCTGGCCGTTTTACGACTCCACGACGAGCTTTTGGCAAAACCCCAACCGGTGACGAGCACTTGCTCTGATGCATGGTGGAGGTGGTTCGAGATGACAAACGCTGACATAC
CGGACGAAGTTGATGAAGGTGACTCAACGTACGCCACCACTGGCGGTGAGGAAATTCACTACATAGAGACGTCCAGCGCATGGAGTCAATGGAGGGACGAGCTTGCCGAA
AGAATGTTCAGTGATTGGGAGTTGCGTAATCAGTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTCGCCATGTTCCTTCACGTACTGGCGCACGACGTGAAAAATCGTGTGATTCAACGTGAGTTTGTGCGGTCCGATGAGACTGTTTCACGTCATTTCAATCTTGTACT
GCTGGCCGTTTTACGACTCCACGACGAGCTTTTGGCAAAACCCCAACCGGTGACGAGCACTTGCTCTGATGCATGGTGGAGGTGGTTCGAGATGACAAACGCTGACATAC
CGGACGAAGTTGATGAAGGTGACTCAACGTACGCCACCACTGGCGGTGAGGAAATTCACTACATAGAGACGTCCAGCGCATGGAGTCAATGGAGGGACGAGCTTGCCGAA
AGAATGTTCAGTGATTGGGAGTTGCGTAATCAGTAA
Protein sequenceShow/hide protein sequence
MVAMFLHVLAHDVKNRVIQREFVRSDETVSRHFNLVLLAVLRLHDELLAKPQPVTSTCSDAWWRWFEMTNADIPDEVDEGDSTYATTGGEEIHYIETSSAWSQWRDELAE
RMFSDWELRNQ