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PI0004424 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004424
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr02:9501543..9503764
RNA-Seq ExpressionPI0004424
SyntenyPI0004424
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.2e-3571.57Show/hide
Query:  LLGIAHLRESDRYSGPLKVTKCGVCGLVGHPNDKCLKLTKDVDVIRMYDSHGNIYNSGWRDNPNLRWGNDNQKSTQATSSFSNQGINLEDIVKALATNTL
        +L +  L  S     PLKVTKCGVCGLVGHPNDKC ++ +DV+++R YD HGN YNSGWRDNPNLRWGNDNQK TQA S+ SNQG NLEDI+KALATNTL
Subjt:  LLGIAHLRESDRYSGPLKVTKCGVCGLVGHPNDKCLKLTKDVDVIRMYDSHGNIYNSGWRDNPNLRWGNDNQKSTQATSSFSNQGINLEDIVKALATNTL

Query:  SF
        SF
Subjt:  SF

KAA0053321.1 retrotransposon gag protein [Cucumis melo var. makuwa]1.4e-3369.61Show/hide
Query:  LLGIAHLRESDRYSGPLKVTKCGVCGLVGHPNDKCLKLTKDVDVIRMYDSHGNIYNSGWRDNPNLRWGNDNQKSTQATSSFSNQGINLEDIVKALATNTL
        +L +  L  S     PLKVTKCGVCGLVGHPNDKC ++ +DV+++R YD +GN YNSGWRDNPNLRWGNDNQK TQA  + SNQG NLEDI+KALATNTL
Subjt:  LLGIAHLRESDRYSGPLKVTKCGVCGLVGHPNDKCLKLTKDVDVIRMYDSHGNIYNSGWRDNPNLRWGNDNQKSTQATSSFSNQGINLEDIVKALATNTL

Query:  SF
        SF
Subjt:  SF

KAA0061138.1 retrotransposon gag protein [Cucumis melo var. makuwa]4.7e-3445.19Show/hide
Query:  MVENSLSFGNRALELYNSLTKEHSFLSSLRVVSPSSPLPLEKSLALRVVSPPGAPSLPARTAGNPCRLFVWPGLVRLARLCDLWSHRGEHLELTRPRDSD
        MVENS SFGNRA EL NSLTKE S L S                                                                        
Subjt:  MVENSLSFGNRALELYNSLTKEHSFLSSLRVVSPSSPLPLEKSLALRVVSPPGAPSLPARTAGNPCRLFVWPGLVRLARLCDLWSHRGEHLELTRPRDSD

Query:  PFLPRVLLGIAHLRESDRYSGPLKVTKCGVCGLVGHPNDKCLKLTKDVDVIRMYDSHGNIYNSGWRDNPNLRWGNDNQKSTQATSSFSNQGINLEDIVKA
              +L +  L  S     P KVTKCGVCGLVGHPNDKCLK+ +DV+++R YD H N YNSGWRDNPNLRWGNDNQK TQA S+ SNQG NLEDI+KA
Subjt:  PFLPRVLLGIAHLRESDRYSGPLKVTKCGVCGLVGHPNDKCLKLTKDVDVIRMYDSHGNIYNSGWRDNPNLRWGNDNQKSTQATSSFSNQGINLEDIVKA

Query:  LATNTLSF
        L TNTLSF
Subjt:  LATNTLSF

KAA0063974.1 retrotransposon gag protein [Cucumis melo var. makuwa]7.7e-3759.4Show/hide
Query:  RLARLCDLWSHRGEHLELTRPRDSDPFLPRVLLGIAHLRESDRYSGPLKVTKCGVCGLVGHPNDKCLKLTKDVDVIRMYDSHGNIYNSGWRDNPNLRWGN
        R+A+    + +RG  L+ +  ++    L   +L +  L  S     PL VTKCGVCGLVGHPNDKCL++ +DV+++R YD HGN YNSGWRDNPNLRWGN
Subjt:  RLARLCDLWSHRGEHLELTRPRDSDPFLPRVLLGIAHLRESDRYSGPLKVTKCGVCGLVGHPNDKCLKLTKDVDVIRMYDSHGNIYNSGWRDNPNLRWGN

Query:  DNQKSTQATSSFSNQGINLEDIVKALATNTLSF
        DNQK TQA  +FSNQG NLEDI+KALATNTLSF
Subjt:  DNQKSTQATSSFSNQGINLEDIVKALATNTLSF

TYK07549.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.3e-3357.14Show/hide
Query:  RLARLCDLWSHRGEHLELTRPRDSDPFLPRVLLGIAHLRESDRYSGPLKVTKCGVCGLVGHPNDKCLKLTKDVDVIRMYDSHGNIYNSGWRDNPNLRWGN
        R+A   + + +R   L+ +  ++    L   +L +  L  S     P KVTKCGVCGLVGHPNDKC K+ +DV+++R YD H N YNSGWRDN NLRWGN
Subjt:  RLARLCDLWSHRGEHLELTRPRDSDPFLPRVLLGIAHLRESDRYSGPLKVTKCGVCGLVGHPNDKCLKLTKDVDVIRMYDSHGNIYNSGWRDNPNLRWGN

Query:  DNQKSTQATSSFSNQGINLEDIVKALATNTLSF
        DNQK TQA S+ SNQG NLEDI+KALATNTLSF
Subjt:  DNQKSTQATSSFSNQGINLEDIVKALATNTLSF

TrEMBL top hitse value%identityAlignment
A0A5A7UID2 Retrotransposon gag protein6.6e-3469.61Show/hide
Query:  LLGIAHLRESDRYSGPLKVTKCGVCGLVGHPNDKCLKLTKDVDVIRMYDSHGNIYNSGWRDNPNLRWGNDNQKSTQATSSFSNQGINLEDIVKALATNTL
        +L +  L  S     PLKVTKCGVCGLVGHPNDKC ++ +DV+++R YD +GN YNSGWRDNPNLRWGNDNQK TQA  + SNQG NLEDI+KALATNTL
Subjt:  LLGIAHLRESDRYSGPLKVTKCGVCGLVGHPNDKCLKLTKDVDVIRMYDSHGNIYNSGWRDNPNLRWGNDNQKSTQATSSFSNQGINLEDIVKALATNTL

Query:  SF
        SF
Subjt:  SF

A0A5A7V0Q7 Retrotransposon gag protein2.3e-3445.19Show/hide
Query:  MVENSLSFGNRALELYNSLTKEHSFLSSLRVVSPSSPLPLEKSLALRVVSPPGAPSLPARTAGNPCRLFVWPGLVRLARLCDLWSHRGEHLELTRPRDSD
        MVENS SFGNRA EL NSLTKE S L S                                                                        
Subjt:  MVENSLSFGNRALELYNSLTKEHSFLSSLRVVSPSSPLPLEKSLALRVVSPPGAPSLPARTAGNPCRLFVWPGLVRLARLCDLWSHRGEHLELTRPRDSD

Query:  PFLPRVLLGIAHLRESDRYSGPLKVTKCGVCGLVGHPNDKCLKLTKDVDVIRMYDSHGNIYNSGWRDNPNLRWGNDNQKSTQATSSFSNQGINLEDIVKA
              +L +  L  S     P KVTKCGVCGLVGHPNDKCLK+ +DV+++R YD H N YNSGWRDNPNLRWGNDNQK TQA S+ SNQG NLEDI+KA
Subjt:  PFLPRVLLGIAHLRESDRYSGPLKVTKCGVCGLVGHPNDKCLKLTKDVDVIRMYDSHGNIYNSGWRDNPNLRWGNDNQKSTQATSSFSNQGINLEDIVKA

Query:  LATNTLSF
        L TNTLSF
Subjt:  LATNTLSF

A0A5A7V9S2 Retrotransposon gag protein3.7e-3759.4Show/hide
Query:  RLARLCDLWSHRGEHLELTRPRDSDPFLPRVLLGIAHLRESDRYSGPLKVTKCGVCGLVGHPNDKCLKLTKDVDVIRMYDSHGNIYNSGWRDNPNLRWGN
        R+A+    + +RG  L+ +  ++    L   +L +  L  S     PL VTKCGVCGLVGHPNDKCL++ +DV+++R YD HGN YNSGWRDNPNLRWGN
Subjt:  RLARLCDLWSHRGEHLELTRPRDSDPFLPRVLLGIAHLRESDRYSGPLKVTKCGVCGLVGHPNDKCLKLTKDVDVIRMYDSHGNIYNSGWRDNPNLRWGN

Query:  DNQKSTQATSSFSNQGINLEDIVKALATNTLSF
        DNQK TQA  +FSNQG NLEDI+KALATNTLSF
Subjt:  DNQKSTQATSSFSNQGINLEDIVKALATNTLSF

A0A5D3CB46 Retrotransposon gag protein1.1e-3357.14Show/hide
Query:  RLARLCDLWSHRGEHLELTRPRDSDPFLPRVLLGIAHLRESDRYSGPLKVTKCGVCGLVGHPNDKCLKLTKDVDVIRMYDSHGNIYNSGWRDNPNLRWGN
        R+A   + + +R   L+ +  ++    L   +L +  L  S     P KVTKCGVCGLVGHPNDKC K+ +DV+++R YD H N YNSGWRDN NLRWGN
Subjt:  RLARLCDLWSHRGEHLELTRPRDSDPFLPRVLLGIAHLRESDRYSGPLKVTKCGVCGLVGHPNDKCLKLTKDVDVIRMYDSHGNIYNSGWRDNPNLRWGN

Query:  DNQKSTQATSSFSNQGINLEDIVKALATNTLSF
        DNQK TQA S+ SNQG NLEDI+KALATNTLSF
Subjt:  DNQKSTQATSSFSNQGINLEDIVKALATNTLSF

A0A5D3CRR8 Retrotransposon gag protein3.5e-3571.57Show/hide
Query:  LLGIAHLRESDRYSGPLKVTKCGVCGLVGHPNDKCLKLTKDVDVIRMYDSHGNIYNSGWRDNPNLRWGNDNQKSTQATSSFSNQGINLEDIVKALATNTL
        +L +  L  S     PLKVTKCGVCGLVGHPNDKC ++ +DV+++R YD HGN YNSGWRDNPNLRWGNDNQK TQA S+ SNQG NLEDI+KALATNTL
Subjt:  LLGIAHLRESDRYSGPLKVTKCGVCGLVGHPNDKCLKLTKDVDVIRMYDSHGNIYNSGWRDNPNLRWGNDNQKSTQATSSFSNQGINLEDIVKALATNTL

Query:  SF
        SF
Subjt:  SF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGAGAATTCTCTAAGTTTTGGGAATAGAGCATTGGAACTCTACAACTCTCTAACAAAAGAGCACTCATTCCTTTCCTCTTTGCGTGTGGTTTCCCCGAGCAGCCC
ACTCCCTCTCGAAAAATCCCTAGCGTTGCGCGTTGTCTCGCCGCCCGGAGCTCCCTCTCTGCCTGCCCGTACCGCCGGAAACCCTTGCCGCTTGTTTGTGTGGCCTGGGT
TGGTTCGTTTAGCAAGGTTGTGCGATTTGTGGTCTCACCGAGGAGAGCATTTGGAGCTCACTCGTCCTCGCGATTCAGATCCCTTCTTGCCGCGTGTGCTTCTTGGAATA
GCACATTTGAGAGAGTCGGATCGTTACAGTGGTCCTCTCAAAGTAACCAAGTGTGGAGTTTGTGGTTTGGTTGGACATCCAAATGACAAATGTCTCAAGTTAACCAAGGA
TGTGGATGTTATTAGGATGTATGATTCCCACGGTAATATATACAATTCAGGATGGAGAGACAACCCAAACTTGAGATGGGGGAATGACAACCAAAAGTCCACTCAAGCAA
CATCCTCATTTTCAAACCAAGGTATAAATCTTGAAGACATAGTCAAGGCTTTAGCTACTAATACTCTTTCTTTTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGTGGAGAATTCTCTAAGTTTTGGGAATAGAGCATTGGAACTCTACAACTCTCTAACAAAAGAGCACTCATTCCTTTCCTCTTTGCGTGTGGTTTCCCCGAGCAGCCC
ACTCCCTCTCGAAAAATCCCTAGCGTTGCGCGTTGTCTCGCCGCCCGGAGCTCCCTCTCTGCCTGCCCGTACCGCCGGAAACCCTTGCCGCTTGTTTGTGTGGCCTGGGT
TGGTTCGTTTAGCAAGGTTGTGCGATTTGTGGTCTCACCGAGGAGAGCATTTGGAGCTCACTCGTCCTCGCGATTCAGATCCCTTCTTGCCGCGTGTGCTTCTTGGAATA
GCACATTTGAGAGAGTCGGATCGTTACAGTGGTCCTCTCAAAGTAACCAAGTGTGGAGTTTGTGGTTTGGTTGGACATCCAAATGACAAATGTCTCAAGTTAACCAAGGA
TGTGGATGTTATTAGGATGTATGATTCCCACGGTAATATATACAATTCAGGATGGAGAGACAACCCAAACTTGAGATGGGGGAATGACAACCAAAAGTCCACTCAAGCAA
CATCCTCATTTTCAAACCAAGGTATAAATCTTGAAGACATAGTCAAGGCTTTAGCTACTAATACTCTTTCTTTTTAA
Protein sequenceShow/hide protein sequence
MVENSLSFGNRALELYNSLTKEHSFLSSLRVVSPSSPLPLEKSLALRVVSPPGAPSLPARTAGNPCRLFVWPGLVRLARLCDLWSHRGEHLELTRPRDSDPFLPRVLLGI
AHLRESDRYSGPLKVTKCGVCGLVGHPNDKCLKLTKDVDVIRMYDSHGNIYNSGWRDNPNLRWGNDNQKSTQATSSFSNQGINLEDIVKALATNTLSF