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PI0004428 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004428
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionSWIM-type domain-containing protein
Genome locationchr08:2633278..2634711
RNA-Seq ExpressionPI0004428
SyntenyPI0004428
Gene Ontology termsGO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006564 - Zinc finger, PMZ-type
IPR007527 - Zinc finger, SWIM-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0051992.1 protein FAR1-RELATED SEQUENCE 3-like [Cucumis melo var. makuwa]4.8e-3856.71Show/hide
Query:  MLKVKELPISSMFEVLRMMLQQWFFDRRNEAKYQVTDFTKSIEQLLREQIECGRSMKVNSINNMKYQVIDGTNQYVVNLPSKICSCKMWDILQIPCSHAC
        MLK +ELPI SM EVLRMMLQ+WFF+RRN+A YQVTDFTK+I  LLREQIE  RSMKVN +NN+KYQVI+GT+QYV+ LP+K              SH  
Subjt:  MLKVKELPISSMFEVLRMMLQQWFFDRRNEAKYQVTDFTKSIEQLLREQIECGRSMKVNSINNMKYQVIDGTNQYVVNLPSKICSCKMWDILQIPCSHAC

Query:  AALTTKYLSIKFYVSPYYFKSTLSSIHRGLIHPLGNRRQWKILEDVRFTVILPPNVKYPVGRSK
                     VSP Y  STLSS +R +I+PLG+  QW+I +D+   VILPPNVK  VGR K
Subjt:  AALTTKYLSIKFYVSPYYFKSTLSSIHRGLIHPLGNRRQWKILEDVRFTVILPPNVKYPVGRSK

XP_008465177.1 PREDICTED: uncharacterized protein LOC103502841 [Cucumis melo]5.9e-3668.22Show/hide
Query:  MLKVKELPISSMFEVLRMMLQQWFFDRRNEAKYQVTDFTKSIEQLLREQIECGRSMKVNSINNMKYQVIDGTNQYVVNLPSKICSCKMWDILQIPCSHAC
        MLK +ELP+ SM E LRMMLQ+WFF+ RN+A+YQVTDFTK+IE +LR+QIE  RS+KVN +NNMKYQVIDG +QYV+ LP+K+CSC+MWDIL+IPC+H C
Subjt:  MLKVKELPISSMFEVLRMMLQQWFFDRRNEAKYQVTDFTKSIEQLLREQIECGRSMKVNSINNMKYQVIDGTNQYVVNLPSKICSCKMWDILQIPCSHAC

Query:  AALTTKY
        A  T K+
Subjt:  AALTTKY

XP_022134813.1 uncharacterized protein LOC111006994 [Momordica charantia]1.0e-2745.12Show/hide
Query:  MLKVKELPISSMFEVLRMMLQQWFFDRRNEAKYQVTDFTKSIEQLLREQIECGRSMKVNSINNMKYQVIDGTNQYVVNLPSKICSCKMWDILQIPCSHAC
        M   +ELPI+SM EV+RMMLQ+WF++R+N A +Q+T+FTKS+E+ LREQI  GR+M V ++NN  YQVID   Q                          
Subjt:  MLKVKELPISSMFEVLRMMLQQWFFDRRNEAKYQVTDFTKSIEQLLREQIECGRSMKVNSINNMKYQVIDGTNQYVVNLPSKICSCKMWDILQIPCSHAC

Query:  AALTTKYLSIKFYVSPYYFKSTLSSIHRGLIHPLGNRRQWKILEDVRFTVILPPNVKYPVGRSK
             K+L  K YVS YY  + L S + G IHPLG++  W I EDV+   +LPPNVK P GR K
Subjt:  AALTTKYLSIKFYVSPYYFKSTLSSIHRGLIHPLGNRRQWKILEDVRFTVILPPNVKYPVGRSK

XP_038880504.1 uncharacterized protein LOC120072166 [Benincasa hispida]1.8e-2942.29Show/hide
Query:  KELPISSMFEVLRMMLQQWFFDRRNEAKYQVTDFTKSIEQLLREQIECGRSMKVNSINNMKYQVIDGTNQYVVNLPSKICSCKMWDILQIPCSHACAALT
        +E P++S+ + +R +LQ WF+++           T   E  LREQ    RS KV+ INN +Y+VIDG N ++VNL  K CSC++WD+++IPC+HACA + 
Subjt:  KELPISSMFEVLRMMLQQWFFDRRNEAKYQVTDFTKSIEQLLREQIECGRSMKVNSINNMKYQVIDGTNQYVVNLPSKICSCKMWDILQIPCSHACAALT

Query:  TKYLSIKFYVSPYYFKSTLSSIHRGLIHPLGNRRQWKILEDVRFTVILPPNVKYPVGRSKCNDRKFGLDNKSPSS
           L I  +V  YYF STL S ++G ++P+GN   W+ + DV   V LPP VK PVGR +   R   +  K  SS
Subjt:  TKYLSIKFYVSPYYFKSTLSSIHRGLIHPLGNRRQWKILEDVRFTVILPPNVKYPVGRSKCNDRKFGLDNKSPSS

XP_038907134.1 uncharacterized protein LOC120092945 [Benincasa hispida]6.3e-3046.25Show/hide
Query:  KELPISSMFEVLRMMLQQWFFDRRNEAKYQVTDFTKSIEQLLREQIECGRSMKVNSINNMKYQVIDGTNQYVVNLPSKICSCKMWDILQIPCSHACAALT
        +E PI+S+ + +R +LQ WF++R   A    T  T   E  LR+Q    R+ KV+SINN +Y+V+DG N YVVN+ SK CSC  WD+ +IPC+HACA L+
Subjt:  KELPISSMFEVLRMMLQQWFFDRRNEAKYQVTDFTKSIEQLLREQIECGRSMKVNSINNMKYQVIDGTNQYVVNLPSKICSCKMWDILQIPCSHACAALT

Query:  TKYLSIKFYVSPYYFKSTLSSIHRGLIHPLGNRRQWKILEDVRFTVILPPNVKYPVGRSK
           L    +VS YYF +T SS ++  IHP+GN   W  + DV   V LPP VK  VGR +
Subjt:  TKYLSIKFYVSPYYFKSTLSSIHRGLIHPLGNRRQWKILEDVRFTVILPPNVKYPVGRSK

TrEMBL top hitse value%identityAlignment
A0A1S3CNA2 uncharacterized protein LOC1035028412.9e-3668.22Show/hide
Query:  MLKVKELPISSMFEVLRMMLQQWFFDRRNEAKYQVTDFTKSIEQLLREQIECGRSMKVNSINNMKYQVIDGTNQYVVNLPSKICSCKMWDILQIPCSHAC
        MLK +ELP+ SM E LRMMLQ+WFF+ RN+A+YQVTDFTK+IE +LR+QIE  RS+KVN +NNMKYQVIDG +QYV+ LP+K+CSC+MWDIL+IPC+H C
Subjt:  MLKVKELPISSMFEVLRMMLQQWFFDRRNEAKYQVTDFTKSIEQLLREQIECGRSMKVNSINNMKYQVIDGTNQYVVNLPSKICSCKMWDILQIPCSHAC

Query:  AALTTKY
        A  T K+
Subjt:  AALTTKY

A0A5A7V6U1 Protein FAR1-RELATED SEQUENCE 3-like7.8e-2673.49Show/hide
Query:  MLKVKELPISSMFEVLRMMLQQWFFDRRNEAKYQVTDFTKSIEQLLREQIECGRSMKVNSINNMKYQVIDGTNQYVVNLPSKI
        MLK +ELPI SM E+LRMMLQ+WFF+RRNEA YQVTDFTK+IE +LRE IE  RSMKVN +N MKYQVIDGT+QYV+ LP+K+
Subjt:  MLKVKELPISSMFEVLRMMLQQWFFDRRNEAKYQVTDFTKSIEQLLREQIECGRSMKVNSINNMKYQVIDGTNQYVVNLPSKI

A0A5D3C2C0 Protein FAR1-RELATED SEQUENCE 3-like2.3e-3856.71Show/hide
Query:  MLKVKELPISSMFEVLRMMLQQWFFDRRNEAKYQVTDFTKSIEQLLREQIECGRSMKVNSINNMKYQVIDGTNQYVVNLPSKICSCKMWDILQIPCSHAC
        MLK +ELPI SM EVLRMMLQ+WFF+RRN+A YQVTDFTK+I  LLREQIE  RSMKVN +NN+KYQVI+GT+QYV+ LP+K              SH  
Subjt:  MLKVKELPISSMFEVLRMMLQQWFFDRRNEAKYQVTDFTKSIEQLLREQIECGRSMKVNSINNMKYQVIDGTNQYVVNLPSKICSCKMWDILQIPCSHAC

Query:  AALTTKYLSIKFYVSPYYFKSTLSSIHRGLIHPLGNRRQWKILEDVRFTVILPPNVKYPVGRSK
                     VSP Y  STLSS +R +I+PLG+  QW+I +D+   VILPPNVK  VGR K
Subjt:  AALTTKYLSIKFYVSPYYFKSTLSSIHRGLIHPLGNRRQWKILEDVRFTVILPPNVKYPVGRSK

A0A5D3CGP0 SWIM-type domain-containing protein2.9e-3668.22Show/hide
Query:  MLKVKELPISSMFEVLRMMLQQWFFDRRNEAKYQVTDFTKSIEQLLREQIECGRSMKVNSINNMKYQVIDGTNQYVVNLPSKICSCKMWDILQIPCSHAC
        MLK +ELP+ SM E LRMMLQ+WFF+ RN+A+YQVTDFTK+IE +LR+QIE  RS+KVN +NNMKYQVIDG +QYV+ LP+K+CSC+MWDIL+IPC+H C
Subjt:  MLKVKELPISSMFEVLRMMLQQWFFDRRNEAKYQVTDFTKSIEQLLREQIECGRSMKVNSINNMKYQVIDGTNQYVVNLPSKICSCKMWDILQIPCSHAC

Query:  AALTTKY
        A  T K+
Subjt:  AALTTKY

A0A6J1C328 uncharacterized protein LOC1110069944.9e-2845.12Show/hide
Query:  MLKVKELPISSMFEVLRMMLQQWFFDRRNEAKYQVTDFTKSIEQLLREQIECGRSMKVNSINNMKYQVIDGTNQYVVNLPSKICSCKMWDILQIPCSHAC
        M   +ELPI+SM EV+RMMLQ+WF++R+N A +Q+T+FTKS+E+ LREQI  GR+M V ++NN  YQVID   Q                          
Subjt:  MLKVKELPISSMFEVLRMMLQQWFFDRRNEAKYQVTDFTKSIEQLLREQIECGRSMKVNSINNMKYQVIDGTNQYVVNLPSKICSCKMWDILQIPCSHAC

Query:  AALTTKYLSIKFYVSPYYFKSTLSSIHRGLIHPLGNRRQWKILEDVRFTVILPPNVKYPVGRSK
             K+L  K YVS YY  + L S + G IHPLG++  W I EDV+   +LPPNVK P GR K
Subjt:  AALTTKYLSIKFYVSPYYFKSTLSSIHRGLIHPLGNRRQWKILEDVRFTVILPPNVKYPVGRSK

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCTTAAAGTTAAGGAGTTACCAATATCTTCCATGTTTGAGGTTCTGAGAATGATGTTGCAACAATGGTTTTTCGATAGAAGGAATGAAGCAAAGTACCAAGTTACTGA
TTTCACAAAATCGATAGAGCAATTATTAAGGGAACAAATTGAGTGTGGTCGATCAATGAAAGTGAATTCCATTAACAATATGAAATACCAGGTGATTGATGGGACCAATC
AATATGTTGTGAACTTGCCTTCAAAGATTTGTAGTTGCAAGATGTGGGATATCTTGCAAATACCATGTTCACACGCTTGTGCTGCTTTGACCACCAAGTATTTGTCTATA
AAGTTTTATGTCTCTCCTTACTATTTCAAGAGCACCTTAAGTTCAATACATAGAGGGTTAATCCATCCATTAGGCAATCGTCGACAATGGAAAATACTAGAAGATGTTAG
ATTTACTGTGATCCTCCCACCCAATGTCAAATATCCAGTTGGTCGGTCCAAGTGTAACGACCGCAAGTTCGGGCTTGACAATAAGTCCCCGAGCAGCCACCTTTTCTCCC
TAGAAATTCCTTTTGTCGCGCGTTGCCTCGCCGTCCGGAAGCCCTTCTCTGCCTGCCCATACCGCCGGAAACCCTTGCCGCGTGCTTGTGTGGCCTGGGTTAGTTCTTTT
ACAAGTTGGTGCGGTGTGAGGTCTCCTCGTGGTTGTCTTGGTGTTTCGATAGTACTCACCTCTGGAAGTGTCTGTTCACAAGCTGTGAAGCTTAGTCCGCGAGCTGAAGT
GTTAGTTCGCGAGCTTCCCTTGCCGCCAGCTGCGGTCCGCGTTCGGCCTCGCGTTTCGCCGAGTTGTCCTTGTCCGCGAGCTGAGGTGTCTCGCCGTGTTCTGAGGTCTC
TACCCGCCTCTTCTTTTCGCGAGCTCCCTTGGTTGCGAGGTAAGTCTTCACTGTTACGGTTTGGTTTTAGTTCTTCTCCGAACTTTTGGGTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGCTTAAAGTTAAGGAGTTACCAATATCTTCCATGTTTGAGGTTCTGAGAATGATGTTGCAACAATGGTTTTTCGATAGAAGGAATGAAGCAAAGTACCAAGTTACTGA
TTTCACAAAATCGATAGAGCAATTATTAAGGGAACAAATTGAGTGTGGTCGATCAATGAAAGTGAATTCCATTAACAATATGAAATACCAGGTGATTGATGGGACCAATC
AATATGTTGTGAACTTGCCTTCAAAGATTTGTAGTTGCAAGATGTGGGATATCTTGCAAATACCATGTTCACACGCTTGTGCTGCTTTGACCACCAAGTATTTGTCTATA
AAGTTTTATGTCTCTCCTTACTATTTCAAGAGCACCTTAAGTTCAATACATAGAGGGTTAATCCATCCATTAGGCAATCGTCGACAATGGAAAATACTAGAAGATGTTAG
ATTTACTGTGATCCTCCCACCCAATGTCAAATATCCAGTTGGTCGGTCCAAGTGTAACGACCGCAAGTTCGGGCTTGACAATAAGTCCCCGAGCAGCCACCTTTTCTCCC
TAGAAATTCCTTTTGTCGCGCGTTGCCTCGCCGTCCGGAAGCCCTTCTCTGCCTGCCCATACCGCCGGAAACCCTTGCCGCGTGCTTGTGTGGCCTGGGTTAGTTCTTTT
ACAAGTTGGTGCGGTGTGAGGTCTCCTCGTGGTTGTCTTGGTGTTTCGATAGTACTCACCTCTGGAAGTGTCTGTTCACAAGCTGTGAAGCTTAGTCCGCGAGCTGAAGT
GTTAGTTCGCGAGCTTCCCTTGCCGCCAGCTGCGGTCCGCGTTCGGCCTCGCGTTTCGCCGAGTTGTCCTTGTCCGCGAGCTGAGGTGTCTCGCCGTGTTCTGAGGTCTC
TACCCGCCTCTTCTTTTCGCGAGCTCCCTTGGTTGCGAGGTAAGTCTTCACTGTTACGGTTTGGTTTTAGTTCTTCTCCGAACTTTTGGGTCTAA
Protein sequenceShow/hide protein sequence
MLKVKELPISSMFEVLRMMLQQWFFDRRNEAKYQVTDFTKSIEQLLREQIECGRSMKVNSINNMKYQVIDGTNQYVVNLPSKICSCKMWDILQIPCSHACAALTTKYLSI
KFYVSPYYFKSTLSSIHRGLIHPLGNRRQWKILEDVRFTVILPPNVKYPVGRSKCNDRKFGLDNKSPSSHLFSLEIPFVARCLAVRKPFSACPYRRKPLPRACVAWVSSF
TSWCGVRSPRGCLGVSIVLTSGSVCSQAVKLSPRAEVLVRELPLPPAAVRVRPRVSPSCPCPRAEVSRRVLRSLPASSFRELPWLRGKSSLLRFGFSSSPNFWV