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PI0004432 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004432
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon gag protein
Genome locationchr09:14568481..14569012
RNA-Seq ExpressionPI0004432
SyntenyPI0004432
Gene Ontology termsGO:0006278 - RNA-dependent DNA biosynthetic process (biological process)
GO:0003964 - RNA-directed DNA polymerase activity (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0047407.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.2e-4164.29Show/hide
Query:  DINTVDAVAGGALADKTPTKARELISRMAENSQNFGNRASELDNSLTK----------------------------KCGVCGLVGHPNDKCPDLVEETNV
        D NTVDAVAGGALADK PT+ARELIS+MAENSQ+F NRASELDNSLTK                            KCGVCGLVGHPNDKCP+++E+ N+
Subjt:  DINTVDAVAGGALADKTPTKARELISRMAENSQNFGNRASELDNSLTK----------------------------KCGVCGLVGHPNDKCPDLVEETNV

Query:  IRKYDPHSNTYNAGWRDNSNLRWGNDNQRPSQATSSSNNQ
        +RKYDPH NTYN+GWRDN NLRWGNDNQ+ +QA S+S+NQ
Subjt:  IRKYDPHSNTYNAGWRDNSNLRWGNDNQRPSQATSSSNNQ

KAA0060435.1 reverse transcriptase [Cucumis melo var. makuwa]3.4e-4276.36Show/hide
Query:  NTVDAVAGGALADKTPTKARELISRMAENSQNFGNRASELDNSLTKKCGVCGLVGHPNDKCPDLVEETNVIRKYDPHSNTYNAGWRDNSNLRWGNDNQRP
        NTVDA  GGALADK PT+ARELISRMAENSQ+FGNRASE DNSLTK+CGVCGLVGHPNDKCP+++ + N++R+YDPHSNTYN+GWRDN NLRW NDNQ+ 
Subjt:  NTVDAVAGGALADKTPTKARELISRMAENSQNFGNRASELDNSLTKKCGVCGLVGHPNDKCPDLVEETNVIRKYDPHSNTYNAGWRDNSNLRWGNDNQRP

Query:  SQATSSSNNQ
        +QA  +S+NQ
Subjt:  SQATSSSNNQ

TYK04216.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.8e-4174.77Show/hide
Query:  INTVDAVAGGALADKTPTKARELISRMAENSQNFGNRASELDNSLTKKCGVCGLVGHPNDKCPDLVEETNVIRKYDPHSNTYNAGWRDNSNLRWGNDNQR
        I T DA AGGALADKTP +ARELISRM E SQ+FGNRASELDNSLTK CGVCGLVGHPNDKCP+++ + N+++KYDPH NTYN+GWRDN NLRWGNDNQ+
Subjt:  INTVDAVAGGALADKTPTKARELISRMAENSQNFGNRASELDNSLTKKCGVCGLVGHPNDKCPDLVEETNVIRKYDPHSNTYNAGWRDNSNLRWGNDNQR

Query:  PSQATSSSNNQ
         +QA  +S+NQ
Subjt:  PSQATSSSNNQ

TYK11282.1 retrotransposon gag protein [Cucumis melo var. makuwa]2.6e-4277.27Show/hide
Query:  NTVDAVAGGALADKTPTKARELISRMAENSQNFGNRASELDNSLTKKCGVCGLVGHPNDKCPDLVEETNVIRKYDPHSNTYNAGWRDNSNLRWGNDNQRP
        NTVDA AGGALADKTPT+A ELISRMAE SQ+FGNRASELDNSLTK+CGVC LVGHPNDKCP+++E+ N+++KYDPH NTYN GWRDN NLRWGNDNQ+ 
Subjt:  NTVDAVAGGALADKTPTKARELISRMAENSQNFGNRASELDNSLTKKCGVCGLVGHPNDKCPDLVEETNVIRKYDPHSNTYNAGWRDNSNLRWGNDNQRP

Query:  SQATSSSNNQ
        +QA  +S+NQ
Subjt:  SQATSSSNNQ

TYK18524.1 retrotransposon gag protein [Cucumis melo var. makuwa]3.4e-4276.36Show/hide
Query:  NTVDAVAGGALADKTPTKARELISRMAENSQNFGNRASELDNSLTKKCGVCGLVGHPNDKCPDLVEETNVIRKYDPHSNTYNAGWRDNSNLRWGNDNQRP
        NTVDA  GGALADK PT+ARELISRMAENSQ+FGNRASE DNSLTK+CGVCGLVGHPNDKCP+++ + N++R+YDPHSNTYN+GWRDN NLRW NDNQ+ 
Subjt:  NTVDAVAGGALADKTPTKARELISRMAENSQNFGNRASELDNSLTKKCGVCGLVGHPNDKCPDLVEETNVIRKYDPHSNTYNAGWRDNSNLRWGNDNQRP

Query:  SQATSSSNNQ
        +QA  +S+NQ
Subjt:  SQATSSSNNQ

TrEMBL top hitse value%identityAlignment
A0A5A7V3J9 Reverse transcriptase1.6e-4276.36Show/hide
Query:  NTVDAVAGGALADKTPTKARELISRMAENSQNFGNRASELDNSLTKKCGVCGLVGHPNDKCPDLVEETNVIRKYDPHSNTYNAGWRDNSNLRWGNDNQRP
        NTVDA  GGALADK PT+ARELISRMAENSQ+FGNRASE DNSLTK+CGVCGLVGHPNDKCP+++ + N++R+YDPHSNTYN+GWRDN NLRW NDNQ+ 
Subjt:  NTVDAVAGGALADKTPTKARELISRMAENSQNFGNRASELDNSLTKKCGVCGLVGHPNDKCPDLVEETNVIRKYDPHSNTYNAGWRDNSNLRWGNDNQRP

Query:  SQATSSSNNQ
        +QA  +S+NQ
Subjt:  SQATSSSNNQ

A0A5D3C1D3 Retrotransposon gag protein1.4e-4174.77Show/hide
Query:  INTVDAVAGGALADKTPTKARELISRMAENSQNFGNRASELDNSLTKKCGVCGLVGHPNDKCPDLVEETNVIRKYDPHSNTYNAGWRDNSNLRWGNDNQR
        I T DA AGGALADKTP +ARELISRM E SQ+FGNRASELDNSLTK CGVCGLVGHPNDKCP+++ + N+++KYDPH NTYN+GWRDN NLRWGNDNQ+
Subjt:  INTVDAVAGGALADKTPTKARELISRMAENSQNFGNRASELDNSLTKKCGVCGLVGHPNDKCPDLVEETNVIRKYDPHSNTYNAGWRDNSNLRWGNDNQR

Query:  PSQATSSSNNQ
         +QA  +S+NQ
Subjt:  PSQATSSSNNQ

A0A5D3CJ21 Retrotransposon gag protein1.2e-4277.27Show/hide
Query:  NTVDAVAGGALADKTPTKARELISRMAENSQNFGNRASELDNSLTKKCGVCGLVGHPNDKCPDLVEETNVIRKYDPHSNTYNAGWRDNSNLRWGNDNQRP
        NTVDA AGGALADKTPT+A ELISRMAE SQ+FGNRASELDNSLTK+CGVC LVGHPNDKCP+++E+ N+++KYDPH NTYN GWRDN NLRWGNDNQ+ 
Subjt:  NTVDAVAGGALADKTPTKARELISRMAENSQNFGNRASELDNSLTKKCGVCGLVGHPNDKCPDLVEETNVIRKYDPHSNTYNAGWRDNSNLRWGNDNQRP

Query:  SQATSSSNNQ
        +QA  +S+NQ
Subjt:  SQATSSSNNQ

A0A5D3CRR8 Retrotransposon gag protein1.1e-4164.29Show/hide
Query:  DINTVDAVAGGALADKTPTKARELISRMAENSQNFGNRASELDNSLTK----------------------------KCGVCGLVGHPNDKCPDLVEETNV
        D NTVDAVAGGALADK PT+ARELIS+MAENSQ+F NRASELDNSLTK                            KCGVCGLVGHPNDKCP+++E+ N+
Subjt:  DINTVDAVAGGALADKTPTKARELISRMAENSQNFGNRASELDNSLTK----------------------------KCGVCGLVGHPNDKCPDLVEETNV

Query:  IRKYDPHSNTYNAGWRDNSNLRWGNDNQRPSQATSSSNNQ
        +RKYDPH NTYN+GWRDN NLRWGNDNQ+ +QA S+S+NQ
Subjt:  IRKYDPHSNTYNAGWRDNSNLRWGNDNQRPSQATSSSNNQ

A0A5D3D4R3 Retrotransposon gag protein1.6e-4276.36Show/hide
Query:  NTVDAVAGGALADKTPTKARELISRMAENSQNFGNRASELDNSLTKKCGVCGLVGHPNDKCPDLVEETNVIRKYDPHSNTYNAGWRDNSNLRWGNDNQRP
        NTVDA  GGALADK PT+ARELISRMAENSQ+FGNRASE DNSLTK+CGVCGLVGHPNDKCP+++ + N++R+YDPHSNTYN+GWRDN NLRW NDNQ+ 
Subjt:  NTVDAVAGGALADKTPTKARELISRMAENSQNFGNRASELDNSLTKKCGVCGLVGHPNDKCPDLVEETNVIRKYDPHSNTYNAGWRDNSNLRWGNDNQRP

Query:  SQATSSSNNQ
        +QA  +S+NQ
Subjt:  SQATSSSNNQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATATAAATACAGTAGACGCTGTAGCAGGAGGTGCACTAGCTGACAAAACCCCTACTAAAGCGAGAGAGCTCATTTCAAGGATGGCAGAAAATTCACAGAACTTTGG
AAATAGGGCATCCGAGCTCGACAATTCATTAACCAAGAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGTCCTGACTTAGTGGAAGAGACAAATGTCA
TTAGGAAGTACGATCCTCATAGCAACACTTACAATGCCGGTTGGAGAGACAACTCTAATCTAAGATGGGGAAACGACAACCAAAGACCCTCACAAGCGACCTCCTCTTCA
AACAATCAAGCAAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGATATAAATACAGTAGACGCTGTAGCAGGAGGTGCACTAGCTGACAAAACCCCTACTAAAGCGAGAGAGCTCATTTCAAGGATGGCAGAAAATTCACAGAACTTTGG
AAATAGGGCATCCGAGCTCGACAATTCATTAACCAAGAAGTGCGGGGTGTGCGGTCTAGTCGGACATCCTAATGACAAGTGTCCTGACTTAGTGGAAGAGACAAATGTCA
TTAGGAAGTACGATCCTCATAGCAACACTTACAATGCCGGTTGGAGAGACAACTCTAATCTAAGATGGGGAAACGACAACCAAAGACCCTCACAAGCGACCTCCTCTTCA
AACAATCAAGCAAACTAG
Protein sequenceShow/hide protein sequence
MDINTVDAVAGGALADKTPTKARELISRMAENSQNFGNRASELDNSLTKKCGVCGLVGHPNDKCPDLVEETNVIRKYDPHSNTYNAGWRDNSNLRWGNDNQRPSQATSSS
NNQAN