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PI0004450 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004450
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionGag/pol protein
Genome locationchr07:12965720..12965974
RNA-Seq ExpressionPI0004450
SyntenyPI0004450
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR001878 - Zinc finger, CCHC-type
IPR036875 - Zinc finger, CCHC-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0035756.1 gag/pol protein [Cucumis melo var. makuwa]1.0e-2778.05Show/hide
Query:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLKNCPKYLNEKKAEKEAQ
        MG GK+VEAN+AT +K+ + GSSSKT+VGPSQ+K KGKGKTPK  KGKKVAKGKCYHCN+ GHWL+NCPKYL EKKAEKEAQ
Subjt:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLKNCPKYLNEKKAEKEAQ

KAA0045181.1 gag/pol protein [Cucumis melo var. makuwa]7.2e-2676.83Show/hide
Query:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLKNCPKYLNEKKAEKEAQ
        MG GK+VEANVATT+K+ ++GSSSKT+VGPSQ+K K KGK PK  KGKKVAKGKCYHCN++ HWLKNC KYL EKKAEKEAQ
Subjt:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLKNCPKYLNEKKAEKEAQ

KAA0046201.1 gag/pol protein [Cucumis melo var. makuwa]6.1e-2571.43Show/hide
Query:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLKNCPKYLNEKKAEKEAQRN
        M   K++E+NVA T+K+ ++GSSSKT+VGPS MKNK KGKTP   KGK VAKGKCYHCN++GHWL+NCPKYL EKKAEKEAQ N
Subjt:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLKNCPKYLNEKKAEKEAQRN

TYK04285.1 gag/pol protein [Cucumis melo var. makuwa]1.2e-2572.62Show/hide
Query:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLKNCPKYLNEKKAEKEAQRN
        MG GK+VE NV TT+K+ + GSSSKT+VG   MK K KGKTPK  +GKKVAKGKCYHCN++GHWL+NCPKYL EKKA+KEAQRN
Subjt:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLKNCPKYLNEKKAEKEAQRN

TYK29862.1 gag/pol protein [Cucumis melo var. makuwa]4.5e-2878.05Show/hide
Query:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLKNCPKYLNEKKAEKEAQ
        MG GK+VEAN+ATT+K+ + GSSSKT+VGPSQ+K KGKGKTPK  KGKKVAKGKCYHCN++GHWL+NCP+YL EKKAEKEAQ
Subjt:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLKNCPKYLNEKKAEKEAQ

TrEMBL top hitse value%identityAlignment
A0A5A7T0L9 Gag/pol protein4.8e-2878.05Show/hide
Query:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLKNCPKYLNEKKAEKEAQ
        MG GK+VEAN+AT +K+ + GSSSKT+VGPSQ+K KGKGKTPK  KGKKVAKGKCYHCN+ GHWL+NCPKYL EKKAEKEAQ
Subjt:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLKNCPKYLNEKKAEKEAQ

A0A5A7TUI5 Gag/pol protein3.5e-2676.83Show/hide
Query:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLKNCPKYLNEKKAEKEAQ
        MG GK+VEANVATT+K+ ++GSSSKT+VGPSQ+K K KGK PK  KGKKVAKGKCYHCN++ HWLKNC KYL EKKAEKEAQ
Subjt:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLKNCPKYLNEKKAEKEAQ

A0A5A7TXW7 Gag/pol protein2.9e-2571.43Show/hide
Query:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLKNCPKYLNEKKAEKEAQRN
        M   K++E+NVA T+K+ ++GSSSKT+VGPS MKNK KGKTP   KGK VAKGKCYHCN++GHWL+NCPKYL EKKAEKEAQ N
Subjt:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLKNCPKYLNEKKAEKEAQRN

A0A5D3BYQ2 Gag/pol protein5.9e-2672.62Show/hide
Query:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLKNCPKYLNEKKAEKEAQRN
        MG GK+VE NV TT+K+ + GSSSKT+VG   MK K KGKTPK  +GKKVAKGKCYHCN++GHWL+NCPKYL EKKA+KEAQRN
Subjt:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLKNCPKYLNEKKAEKEAQRN

A0A5D3E1U5 Gag/pol protein2.2e-2878.05Show/hide
Query:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLKNCPKYLNEKKAEKEAQ
        MG GK+VEAN+ATT+K+ + GSSSKT+VGPSQ+K KGKGKTPK  KGKKVAKGKCYHCN++GHWL+NCP+YL EKKAEKEAQ
Subjt:  MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLKNCPKYLNEKKAEKEAQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGTATGGGGAAGCAAGTGGAAGCAAATGTTGCTACCACTAAGAAAAAGTTTATAAAAGGATCGTCCTCTAAAACTAAAGTTGGGCCTTCACAAATGAAAAATAAGGG
AAAGGGGAAGACTCCCAAGATTGGTAAGGGAAAGAAAGTTGCGAAAGGTAAATGTTACCACTGCAACCAAAATGGGCATTGGTTAAAGAATTGCCCGAAGTACCTTAATG
AGAAGAAAGCTGAGAAGGAAGCACAACGAAACTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGTATGGGGAAGCAAGTGGAAGCAAATGTTGCTACCACTAAGAAAAAGTTTATAAAAGGATCGTCCTCTAAAACTAAAGTTGGGCCTTCACAAATGAAAAATAAGGG
AAAGGGGAAGACTCCCAAGATTGGTAAGGGAAAGAAAGTTGCGAAAGGTAAATGTTACCACTGCAACCAAAATGGGCATTGGTTAAAGAATTGCCCGAAGTACCTTAATG
AGAAGAAAGCTGAGAAGGAAGCACAACGAAACTAG
Protein sequenceShow/hide protein sequence
MGMGKQVEANVATTKKKFIKGSSSKTKVGPSQMKNKGKGKTPKIGKGKKVAKGKCYHCNQNGHWLKNCPKYLNEKKAEKEAQRN