; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

PI0004454 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004454
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionTransposable element protein
Genome locationchr12:10921530..10922026
RNA-Seq ExpressionPI0004454
SyntenyPI0004454
Gene Ontology termsGO:0015074 - DNA integration (biological process)
GO:0071897 - DNA biosynthetic process (biological process)
GO:0003676 - nucleic acid binding (molecular function)
GO:0003887 - DNA-directed DNA polymerase activity (molecular function)
InterPro domainsIPR001584 - Integrase, catalytic core
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
PNX77934.1 hypothetical protein L195_g033907 [Trifolium pratense]4.6e-5172.39Show/hide
Query:  MPRALISDEGSHFINRIIAKLLAKFNINHKVATAYHPQTNGQAEVSNREIKKILEKVVNSSCKDWADHLDSALWAYRTAYKTPIGMSPYAMVFGKACHLP
        +PRALISDEG+HF+NR +  LL K+N++H++AT YHPQT+GQ EVSNR+IK+ILEK VNSS KDW+  LD ALWAYRTA+KTPIGMSP+ +V+GKACHLP
Subjt:  MPRALISDEGSHFINRIIAKLLAKFNINHKVATAYHPQTNGQAEVSNREIKKILEKVVNSSCKDWADHLDSALWAYRTAYKTPIGMSPYAMVFGKACHLP

Query:  LELEHKALWACKKLNFDSQAAGEARLLQLHELQE
        LELEHKALWA K LNFD   AGE+R+LQLHEL E
Subjt:  LELEHKALWACKKLNFDSQAAGEARLLQLHELQE

WP_217833161.1 DDE-type integrase/transposase/recombinase, partial [Synechococcus sp. PCC 7002]8.4e-5375.19Show/hide
Query:  PRALISDEGSHFINRIIAKLLAKFNINHKVATAYHPQTNGQAEVSNREIKKILEKVVNSSCKDWADHLDSALWAYRTAYKTPIGMSPYAMVFGKACHLPL
        PRA+ISDEG+HFINRII  LL KFN++H+VATAYHPQTN QAE++N+EIK ILEKVV++S KDW + LD ALWAYRT +KTPIGMSPYA+VFGKACHL L
Subjt:  PRALISDEGSHFINRIIAKLLAKFNINHKVATAYHPQTNGQAEVSNREIKKILEKVVNSSCKDWADHLDSALWAYRTAYKTPIGMSPYAMVFGKACHLPL

Query:  ELEHKALWACKKLNFDSQAAGEARLLQLHELQE
        ELEHKA+WA KKLN D  A+GEAR LQL+EL E
Subjt:  ELEHKALWACKKLNFDSQAAGEARLLQLHELQE

XP_017221472.1 PREDICTED: uncharacterized protein LOC108198219 [Daucus carota subsp. sativus]7.1e-5273.68Show/hide
Query:  PRALISDEGSHFINRIIAKLLAKFNINHKVATAYHPQTNGQAEVSNREIKKILEKVVNSSCKDWADHLDSALWAYRTAYKTPIGMSPYAMVFGKACHLPL
        PRA+ISDEG+HF+N+++   LAK+N+ HKVATAYHPQTNGQAE+SNREIK IL+KVVN + KDW+  LD ALWAYRTAYKTP+GMSPY +VFGKACHLP+
Subjt:  PRALISDEGSHFINRIIAKLLAKFNINHKVATAYHPQTNGQAEVSNREIKKILEKVVNSSCKDWADHLDSALWAYRTAYKTPIGMSPYAMVFGKACHLPL

Query:  ELEHKALWACKKLNFDSQAAGEARLLQLHELQE
        ELEHKA WA K LNFD Q AGE R LQL EL E
Subjt:  ELEHKALWACKKLNFDSQAAGEARLLQLHELQE

XP_030478317.1 uncharacterized protein LOC115695391 [Cannabis sativa]5.8e-5475.19Show/hide
Query:  PRALISDEGSHFINRIIAKLLAKFNINHKVATAYHPQTNGQAEVSNREIKKILEKVVNSSCKDWADHLDSALWAYRTAYKTPIGMSPYAMVFGKACHLPL
        PRALISDEG+HF+N+++A LLAK+++ HK+ATAYHPQTNGQAE+SNREIK ILEKVVN + KDW+  LD ALWAYRTA+KTP+GMSPY +V+GKACHLP+
Subjt:  PRALISDEGSHFINRIIAKLLAKFNINHKVATAYHPQTNGQAEVSNREIKKILEKVVNSSCKDWADHLDSALWAYRTAYKTPIGMSPYAMVFGKACHLPL

Query:  ELEHKALWACKKLNFDSQAAGEARLLQLHELQE
        ELEHKA WA KKLN D QAAGEAR LQL+EL+E
Subjt:  ELEHKALWACKKLNFDSQAAGEARLLQLHELQE

XP_030502450.1 uncharacterized protein LOC115717606 [Cannabis sativa]2.1e-5171.43Show/hide
Query:  PRALISDEGSHFINRIIAKLLAKFNINHKVATAYHPQTNGQAEVSNREIKKILEKVVNSSCKDWADHLDSALWAYRTAYKTPIGMSPYAMVFGKACHLPL
        PRALISDEG+HF+N+++A LLAK+++ HK+ATAYHPQTNGQAE+SNREIK ILEKVVN + KDW+  LD ALWAYRT++KTP+GMSPY +V+GKACHLP+
Subjt:  PRALISDEGSHFINRIIAKLLAKFNINHKVATAYHPQTNGQAEVSNREIKKILEKVVNSSCKDWADHLDSALWAYRTAYKTPIGMSPYAMVFGKACHLPL

Query:  ELEHKALWACKKLNFDSQAAGEARLLQLHELQE
        EL+ KA WA KKLN D Q AGEAR LQL+EL++
Subjt:  ELEHKALWACKKLNFDSQAAGEARLLQLHELQE

TrEMBL top hitse value%identityAlignment
A0A1B5Z879 Reverse transcriptase (Fragment)3.2e-5070.15Show/hide
Query:  MPRALISDEGSHFINRIIAKLLAKFNINHKVATAYHPQTNGQAEVSNREIKKILEKVVNSSCKDWADHLDSALWAYRTAYKTPIGMSPYAMVFGKACHLP
        +PRALISDEG+HF+NR +  LL K+N++H+++T YHPQT+GQ EVSNR+IK+ILEK +N+S KDW+  LD ALWAYRTA+KTPIGMSP+ +V+GKACHLP
Subjt:  MPRALISDEGSHFINRIIAKLLAKFNINHKVATAYHPQTNGQAEVSNREIKKILEKVVNSSCKDWADHLDSALWAYRTAYKTPIGMSPYAMVFGKACHLP

Query:  LELEHKALWACKKLNFDSQAAGEARLLQLHELQE
        LELEHKALWA K LNFD   AGE+R+LQLHEL E
Subjt:  LELEHKALWACKKLNFDSQAAGEARLLQLHELQE

A0A1U7XLI6 uncharacterized protein LOC1042389351.4e-5072.93Show/hide
Query:  PRALISDEGSHFINRIIAKLLAKFNINHKVATAYHPQTNGQAEVSNREIKKILEKVVNSSCKDWADHLDSALWAYRTAYKTPIGMSPYAMVFGKACHLPL
        PRALISDEG+HF NR++  LLAK+ + H+VATAYHPQT+GQAEVSNREIK+ILEK VN + KDWA  LD ALWAYRT YKTPIG SPY +V+GKACHLP+
Subjt:  PRALISDEGSHFINRIIAKLLAKFNINHKVATAYHPQTNGQAEVSNREIKKILEKVVNSSCKDWADHLDSALWAYRTAYKTPIGMSPYAMVFGKACHLPL

Query:  ELEHKALWACKKLNFDSQAAGEARLLQLHELQE
        ELEHKA WA  KLN D +AAGE RL+QL+EL E
Subjt:  ELEHKALWACKKLNFDSQAAGEARLLQLHELQE

A0A2G9FWY3 Reverse transcriptase4.2e-5071.43Show/hide
Query:  PRALISDEGSHFINRIIAKLLAKFNINHKVATAYHPQTNGQAEVSNREIKKILEKVVNSSCKDWADHLDSALWAYRTAYKTPIGMSPYAMVFGKACHLPL
        PRA+ISD G+HF NR    LL+K+ + HK++T YHPQT+GQ EVSNREIK+ILEK V+S+ KDW+  LD ALWAYRTAYKTPIGMSPY +VFGKACHLP+
Subjt:  PRALISDEGSHFINRIIAKLLAKFNINHKVATAYHPQTNGQAEVSNREIKKILEKVVNSSCKDWADHLDSALWAYRTAYKTPIGMSPYAMVFGKACHLPL

Query:  ELEHKALWACKKLNFDSQAAGEARLLQLHELQE
        ELEH A WA +KLNFD QAAGE RLLQL+EL E
Subjt:  ELEHKALWACKKLNFDSQAAGEARLLQLHELQE

A0A2K3LHD8 Integrase catalytic domain-containing protein2.2e-5172.39Show/hide
Query:  MPRALISDEGSHFINRIIAKLLAKFNINHKVATAYHPQTNGQAEVSNREIKKILEKVVNSSCKDWADHLDSALWAYRTAYKTPIGMSPYAMVFGKACHLP
        +PRALISDEG+HF+NR +  LL K+N++H++AT YHPQT+GQ EVSNR+IK+ILEK VNSS KDW+  LD ALWAYRTA+KTPIGMSP+ +V+GKACHLP
Subjt:  MPRALISDEGSHFINRIIAKLLAKFNINHKVATAYHPQTNGQAEVSNREIKKILEKVVNSSCKDWADHLDSALWAYRTAYKTPIGMSPYAMVFGKACHLP

Query:  LELEHKALWACKKLNFDSQAAGEARLLQLHELQE
        LELEHKALWA K LNFD   AGE+R+LQLHEL E
Subjt:  LELEHKALWACKKLNFDSQAAGEARLLQLHELQE

A0A2K3NJZ5 Integrase catalytic domain-containing protein (Fragment)6.5e-5171.64Show/hide
Query:  MPRALISDEGSHFINRIIAKLLAKFNINHKVATAYHPQTNGQAEVSNREIKKILEKVVNSSCKDWADHLDSALWAYRTAYKTPIGMSPYAMVFGKACHLP
        +PRALISDEG+HF+NR +  LL K+N++H++AT YHPQT+GQ EVSNR+IK+ILEK VNSS KDW+  LD ALWAYRTA+KTPIGMSP+ +V+GK+CHLP
Subjt:  MPRALISDEGSHFINRIIAKLLAKFNINHKVATAYHPQTNGQAEVSNREIKKILEKVVNSSCKDWADHLDSALWAYRTAYKTPIGMSPYAMVFGKACHLP

Query:  LELEHKALWACKKLNFDSQAAGEARLLQLHELQE
        LELEHKALWA K LNFD   AGE+R+LQLHEL E
Subjt:  LELEHKALWACKKLNFDSQAAGEARLLQLHELQE

SwissProt top hitse value%identityAlignment
O93209 Pro-Pol polyprotein1.8e-1031.19Show/hide
Query:  MPRALISDEGSHFINRIIAKLLAKFNINHKVATAYHPQTNGQAEVSNREIKKILEKVVNSSCKDWADHLDSALWAYRTAYKTPIGMSPYAMVFGKACHLP
        +P+ L SD+GS F +   A+   + NI  + +T YHPQ++G+ E  N EIKK+L K++      W + + S   A    +      +P+ ++FG  C+LP
Subjt:  MPRALISDEGSHFINRIIAKLLAKFNINHKVATAYHPQTNGQAEVSNREIKKILEKVVNSSCKDWADHLDSALWAYRTAYKTPIGMSPYAMVFGKACHLP

Query:  LELEHKALW
           +    W
Subjt:  LELEHKALW

P03359 Gag-Pol polyprotein1.3e-0837.11Show/hide
Query:  MPRALISDEGSHFINRIIAKLLAKFNINHKVATAYHPQTNGQAEVSNREIKKILEKV-VNSSCKDWADHLDSALWAYRTAYKTP--IGMSPYAMVFG
        +P+ L SD G  F+ ++   L  +  IN K+  AY PQ++GQ E  NR IK+ L K+ + +  KDW   L  AL   R    TP   G++PY +++G
Subjt:  MPRALISDEGSHFINRIIAKLLAKFNINHKVATAYHPQTNGQAEVSNREIKKILEKV-VNSSCKDWADHLDSALWAYRTAYKTP--IGMSPYAMVFG

P10273 Gag-Pol polyprotein1.7e-0834.74Show/hide
Query:  MPRALISDEGSHFINRIIAKLLAKFNINHKVATAYHPQTNGQAEVSNREIKKILEKV-VNSSCKDWADHLDSALWAYRTAYKTPIGMSPYAMVFG
        +P+ L SD G  FI+++   +     IN K+  AY PQ++GQ E  NR IK+ L K+ + +  KDW   L   L+  R     P G++P+ +++G
Subjt:  MPRALISDEGSHFINRIIAKLLAKFNINHKVATAYHPQTNGQAEVSNREIKKILEKV-VNSSCKDWADHLDSALWAYRTAYKTPIGMSPYAMVFG

P21414 Gag-Pol polyprotein1.7e-0837.11Show/hide
Query:  MPRALISDEGSHFINRIIAKLLAKFNINHKVATAYHPQTNGQAEVSNREIKKILEKV-VNSSCKDWADHLDSALWAYRTAYKTP--IGMSPYAMVFG
        +P+ L SD G  F+ ++   L  +  IN K+  AY PQ++GQ E  NR IK+ L K+ + +  KDW   L  AL   R    TP   G++PY +++G
Subjt:  MPRALISDEGSHFINRIIAKLLAKFNINHKVATAYHPQTNGQAEVSNREIKKILEKV-VNSSCKDWADHLDSALWAYRTAYKTP--IGMSPYAMVFG

P31792 Pol polyprotein (Fragment)1.7e-0834.74Show/hide
Query:  MPRALISDEGSHFINRIIAKLLAKFNINHKVATAYHPQTNGQAEVSNREIKKILEKV-VNSSCKDWADHLDSALWAYRTAYKTPIGMSPYAMVFG
        +P+ + SD G  F++++   L     IN K+  AY PQ++GQ E  NR IK+ L K+ + +  KDW   L  AL   R       G++PY +++G
Subjt:  MPRALISDEGSHFINRIIAKLLAKFNINHKVATAYHPQTNGQAEVSNREIKKILEKV-VNSSCKDWADHLDSALWAYRTAYKTPIGMSPYAMVFG

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCTAGAGCTCTTATCAGTGATGAAGGTTCACACTTTATTAACCGCATCATTGCAAAATTATTGGCAAAATTCAATATCAACCACAAAGTCGCCACCGCCTACCATCC
TCAAACTAATGGTCAGGCGGAAGTTTCCAACAGAGAAATTAAGAAGATTTTGGAGAAAGTGGTAAACTCTTCCTGCAAGGACTGGGCGGATCACCTGGATTCCGCGTTAT
GGGCTTATCGTACCGCGTACAAGACTCCAATTGGAATGTCACCCTACGCGATGGTCTTTGGGAAAGCTTGCCACCTACCTTTAGAGTTGGAACATAAGGCGTTGTGGGCT
TGTAAAAAATTGAATTTTGATTCACAAGCCGCAGGGGAAGCCAGATTGCTACAGTTGCATGAGCTTCAGGAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCTAGAGCTCTTATCAGTGATGAAGGTTCACACTTTATTAACCGCATCATTGCAAAATTATTGGCAAAATTCAATATCAACCACAAAGTCGCCACCGCCTACCATCC
TCAAACTAATGGTCAGGCGGAAGTTTCCAACAGAGAAATTAAGAAGATTTTGGAGAAAGTGGTAAACTCTTCCTGCAAGGACTGGGCGGATCACCTGGATTCCGCGTTAT
GGGCTTATCGTACCGCGTACAAGACTCCAATTGGAATGTCACCCTACGCGATGGTCTTTGGGAAAGCTTGCCACCTACCTTTAGAGTTGGAACATAAGGCGTTGTGGGCT
TGTAAAAAATTGAATTTTGATTCACAAGCCGCAGGGGAAGCCAGATTGCTACAGTTGCATGAGCTTCAGGAGTGACATTCTTAGGCATACGAGAACGCCAAAATATACAA
GGAGAAGACAAAGGCGTGGCATGACAACCACATCCATAGGCGTGAGTTAGAAGCCGG
Protein sequenceShow/hide protein sequence
MPRALISDEGSHFINRIIAKLLAKFNINHKVATAYHPQTNGQAEVSNREIKKILEKVVNSSCKDWADHLDSALWAYRTAYKTPIGMSPYAMVFGKACHLPLELEHKALWA
CKKLNFDSQAAGEARLLQLHELQE