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PI0004461 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004461
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr02:9266770..9267281
RNA-Seq ExpressionPI0004461
SyntenyPI0004461
Gene Ontology termsGO:0090304 - nucleic acid metabolic process (biological process)
GO:0005488 - binding (molecular function)
GO:0008233 - peptidase activity (molecular function)
GO:0016740 - transferase activity (molecular function)
InterPro domainsIPR005162 - Retrotransposon gag domain


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060484.1 Gag protease polyprotein-like protein [Cucumis melo var. makuwa]7.4e-2450.94Show/hide
Query:  RVKALGAKEFSGTMEPEQAETWIRKMEKCFRVMQCPEERKVNLMMFLLQRGVENWWMLEESRR---GEVNWEKLKEAFNEKYFSQTYKDEKQDEFLHLKQ
        R+KALGA  F+GT  P  AE W+  +EKCFRV +CPE+RKV L  FLLQ G E+WW +EESRR   G+++W + K+AF +K++ ++++D K++EFL L Q
Subjt:  RVKALGAKEFSGTMEPEQAETWIRKMEKCFRVMQCPEERKVNLMMFLLQRGVENWWMLEESRR---GEVNWEKLKEAFNEKYFSQTYKDEKQDEFLHLKQ

Query:  GKLIVA
        G + +A
Subjt:  GKLIVA

KGN61535.1 hypothetical protein Csa_006696 [Cucumis sativus]1.1e-2456.14Show/hide
Query:  IECTMDSEAQLVNPDAERMQKEELYDHVAQRLIEGL-----------RVKALGAKEFSGTMEPEQAETWIRKMEKCFRVMQCPEERKVNLMMFLLQRGVE
        +E T+DSEA  +NP+A R ++E LYD  AQRLI  L           RVKALGA EF+G    E+AE WIR +EKCFRVMQCP+ER+VNL +FLL    E
Subjt:  IECTMDSEAQLVNPDAERMQKEELYDHVAQRLIEGL-----------RVKALGAKEFSGTMEPEQAETWIRKMEKCFRVMQCPEERKVNLMMFLLQRGVE

Query:  NWWMLEESRRGEVN
        +WW+LEE+RRG V+
Subjt:  NWWMLEESRRGEVN

TYJ95881.1 retrotransposon protein, putative, Ty3-gypsy subclass [Cucumis melo var. makuwa]7.4e-2437.85Show/hide
Query:  MSRGRGR----GQLGNRSRTTIECTMDSEAQLVNPDAERMQKEELYDHVAQRLIEGL--------------RVKALGAKEFSGTMEPEQAETWIRKMEKC
        M RG+ R     +  N ++     + +S+A+   P  E   +E+L D +AQRL+ G+              R+KALGA  F+GT  P   E W+  +EKC
Subjt:  MSRGRGR----GQLGNRSRTTIECTMDSEAQLVNPDAERMQKEELYDHVAQRLIEGL--------------RVKALGAKEFSGTMEPEQAETWIRKMEKC

Query:  FRVMQCPEERKVNLMMFLLQRGVENWWMLEESRR---GEVNWEKLKEAFNEKYFSQTYKDEKQDEFLHLKQGKLIVA
        FRV +  E+RKV L  FLLQ   E+WW +EESRR   G+++W++ K+AF +K++ ++++D K +EF+ L QG + VA
Subjt:  FRVMQCPEERKVNLMMFLLQRGVENWWMLEESRR---GEVNWEKLKEAFNEKYFSQTYKDEKQDEFLHLKQGKLIVA

TYK15233.1 uncharacterized protein E5676_scaffold892G00030 [Cucumis melo var. makuwa]9.7e-2450.94Show/hide
Query:  RVKALGAKEFSGTMEPEQAETWIRKMEKCFRVMQCPEERKVNLMMFLLQRGVENWWMLEESRR---GEVNWEKLKEAFNEKYFSQTYKDEKQDEFLHLKQ
        R+KALGA  F+GT  P   E W+  +EKCFRV +CPE+RKV L  FLLQ G E+WW +EESRR   G+++W++ K+AF +K++ ++++D K++EFL L Q
Subjt:  RVKALGAKEFSGTMEPEQAETWIRKMEKCFRVMQCPEERKVNLMMFLLQRGVENWWMLEESRR---GEVNWEKLKEAFNEKYFSQTYKDEKQDEFLHLKQ

Query:  GKLIVA
        G + VA
Subjt:  GKLIVA

XP_038877272.1 uncharacterized protein LOC120069556 [Benincasa hispida]1.1e-2442.77Show/hide
Query:  MSRGRGRGQLGNRSRTTIECTMDSEAQLVNPDAERMQKEELYDHVAQRLIEGL--------------RVKALGAKEFSGTMEPEQAETWIRKMEKCFRVM
        M+R R R Q  + S  T + T   + +  +P +E    E++    A+ L E L              R+KALGA  F GTM P  AE W   +EKCFRVM
Subjt:  MSRGRGRGQLGNRSRTTIECTMDSEAQLVNPDAERMQKEELYDHVAQRLIEGL--------------RVKALGAKEFSGTMEPEQAETWIRKMEKCFRVM

Query:  QCPEERKVNLMMFLLQRGVENWW-MLEESRRG--EVNWEKLKEAFNEKYFSQTYKDEKQDEFLHLKQGKLIVA
         CPE+RKV L  FLLQ+  E+WW + ++ RRG  EV WE+  +AF+EK++ QT++D K++EFL L QG L VA
Subjt:  QCPEERKVNLMMFLLQRGVENWW-MLEESRRG--EVNWEKLKEAFNEKYFSQTYKDEKQDEFLHLKQGKLIVA

TrEMBL top hitse value%identityAlignment
A0A0A0LI31 Uncharacterized protein5.5e-2556.14Show/hide
Query:  IECTMDSEAQLVNPDAERMQKEELYDHVAQRLIEGL-----------RVKALGAKEFSGTMEPEQAETWIRKMEKCFRVMQCPEERKVNLMMFLLQRGVE
        +E T+DSEA  +NP+A R ++E LYD  AQRLI  L           RVKALGA EF+G    E+AE WIR +EKCFRVMQCP+ER+VNL +FLL    E
Subjt:  IECTMDSEAQLVNPDAERMQKEELYDHVAQRLIEGL-----------RVKALGAKEFSGTMEPEQAETWIRKMEKCFRVMQCPEERKVNLMMFLLQRGVE

Query:  NWWMLEESRRGEVN
        +WW+LEE+RRG V+
Subjt:  NWWMLEESRRGEVN

A0A5A7TBS0 CCHC-type domain-containing protein4.7e-2450.94Show/hide
Query:  RVKALGAKEFSGTMEPEQAETWIRKMEKCFRVMQCPEERKVNLMMFLLQRGVENWWMLEESRR---GEVNWEKLKEAFNEKYFSQTYKDEKQDEFLHLKQ
        R+KALGA  F+GT  P   E W+  +EKCFRV +CPE+RKV L  FLLQ G E+WW +EESRR   G+++W++ K+AF +K++ ++++D K++EFL L Q
Subjt:  RVKALGAKEFSGTMEPEQAETWIRKMEKCFRVMQCPEERKVNLMMFLLQRGVENWWMLEESRR---GEVNWEKLKEAFNEKYFSQTYKDEKQDEFLHLKQ

Query:  GKLIVA
        G + VA
Subjt:  GKLIVA

A0A5A7UZM6 Gag protease polyprotein-like protein3.6e-2450.94Show/hide
Query:  RVKALGAKEFSGTMEPEQAETWIRKMEKCFRVMQCPEERKVNLMMFLLQRGVENWWMLEESRR---GEVNWEKLKEAFNEKYFSQTYKDEKQDEFLHLKQ
        R+KALGA  F+GT  P  AE W+  +EKCFRV +CPE+RKV L  FLLQ G E+WW +EESRR   G+++W + K+AF +K++ ++++D K++EFL L Q
Subjt:  RVKALGAKEFSGTMEPEQAETWIRKMEKCFRVMQCPEERKVNLMMFLLQRGVENWWMLEESRR---GEVNWEKLKEAFNEKYFSQTYKDEKQDEFLHLKQ

Query:  GKLIVA
        G + +A
Subjt:  GKLIVA

A0A5D3BB91 Reverse transcriptase3.6e-2437.85Show/hide
Query:  MSRGRGR----GQLGNRSRTTIECTMDSEAQLVNPDAERMQKEELYDHVAQRLIEGL--------------RVKALGAKEFSGTMEPEQAETWIRKMEKC
        M RG+ R     +  N ++     + +S+A+   P  E   +E+L D +AQRL+ G+              R+KALGA  F+GT  P   E W+  +EKC
Subjt:  MSRGRGR----GQLGNRSRTTIECTMDSEAQLVNPDAERMQKEELYDHVAQRLIEGL--------------RVKALGAKEFSGTMEPEQAETWIRKMEKC

Query:  FRVMQCPEERKVNLMMFLLQRGVENWWMLEESRR---GEVNWEKLKEAFNEKYFSQTYKDEKQDEFLHLKQGKLIVA
        FRV +  E+RKV L  FLLQ   E+WW +EESRR   G+++W++ K+AF +K++ ++++D K +EF+ L QG + VA
Subjt:  FRVMQCPEERKVNLMMFLLQRGVENWWMLEESRR---GEVNWEKLKEAFNEKYFSQTYKDEKQDEFLHLKQGKLIVA

A0A5D3CTK6 CCHC-type domain-containing protein4.7e-2450.94Show/hide
Query:  RVKALGAKEFSGTMEPEQAETWIRKMEKCFRVMQCPEERKVNLMMFLLQRGVENWWMLEESRR---GEVNWEKLKEAFNEKYFSQTYKDEKQDEFLHLKQ
        R+KALGA  F+GT  P   E W+  +EKCFRV +CPE+RKV L  FLLQ G E+WW +EESRR   G+++W++ K+AF +K++ ++++D K++EFL L Q
Subjt:  RVKALGAKEFSGTMEPEQAETWIRKMEKCFRVMQCPEERKVNLMMFLLQRGVENWWMLEESRR---GEVNWEKLKEAFNEKYFSQTYKDEKQDEFLHLKQ

Query:  GKLIVA
        G + VA
Subjt:  GKLIVA

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGCGAGGACGAGGACGTGGACAACTAGGAAATAGGTCACGTACAACAATTGAGTGTACTATGGATTCTGAGGCTCAATTAGTAAATCCAGATGCTGAGAGGATGCA
GAAAGAAGAGTTATATGATCATGTAGCGCAGAGGTTGATAGAAGGATTAAGGGTTAAGGCATTAGGAGCTAAAGAATTTTCAGGAACAATGGAACCTGAACAGGCGGAGA
CATGGATTAGAAAGATGGAGAAGTGTTTTAGGGTTATGCAGTGCCCAGAAGAGAGGAAAGTAAATTTAATGATGTTTTTACTCCAAAGAGGAGTAGAAAATTGGTGGATG
TTGGAAGAAAGTAGACGAGGCGAGGTGAATTGGGAAAAGCTTAAGGAAGCTTTCAATGAGAAGTATTTCTCACAAACTTACAAGGATGAGAAGCAAGACGAATTTTTGCA
TTTAAAGCAAGGCAAGCTCATAGTCGCTAGTGGCTACTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGCGAGGACGAGGACGTGGACAACTAGGAAATAGGTCACGTACAACAATTGAGTGTACTATGGATTCTGAGGCTCAATTAGTAAATCCAGATGCTGAGAGGATGCA
GAAAGAAGAGTTATATGATCATGTAGCGCAGAGGTTGATAGAAGGATTAAGGGTTAAGGCATTAGGAGCTAAAGAATTTTCAGGAACAATGGAACCTGAACAGGCGGAGA
CATGGATTAGAAAGATGGAGAAGTGTTTTAGGGTTATGCAGTGCCCAGAAGAGAGGAAAGTAAATTTAATGATGTTTTTACTCCAAAGAGGAGTAGAAAATTGGTGGATG
TTGGAAGAAAGTAGACGAGGCGAGGTGAATTGGGAAAAGCTTAAGGAAGCTTTCAATGAGAAGTATTTCTCACAAACTTACAAGGATGAGAAGCAAGACGAATTTTTGCA
TTTAAAGCAAGGCAAGCTCATAGTCGCTAGTGGCTACTGA
Protein sequenceShow/hide protein sequence
MSRGRGRGQLGNRSRTTIECTMDSEAQLVNPDAERMQKEELYDHVAQRLIEGLRVKALGAKEFSGTMEPEQAETWIRKMEKCFRVMQCPEERKVNLMMFLLQRGVENWWM
LEESRRGEVNWEKLKEAFNEKYFSQTYKDEKQDEFLHLKQGKLIVASGY