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PI0004474 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004474
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionReverse transcriptase, RNA-dependent DNA polymerase
Genome locationchr12:7725825..7726319
RNA-Seq ExpressionPI0004474
SyntenyPI0004474
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0067279.1 uncharacterized protein E6C27_scaffold418G001000 [Cucumis melo var. makuwa]1.1e-4259.04Show/hide
Query:  MANAA--SIVRSSTINFSIPPLNQLLNQLTSVKLDRGNYLLWKTLAFSILKSYKLEGHLTGEEPCPPKFV---TNPIE-------------ESYSTATRT
        M NAA  S+  + T +F+ P LNQ+LNQLT++KLDRGNYLLWKTLA  ILKSYKL  HL GE PC PK +   T P E              S STA  T
Subjt:  MANAA--SIVRSSTINFSIPPLNQLLNQLTSVKLDRGNYLLWKTLAFSILKSYKLEGHLTGEEPCPPKFV---TNPIE-------------ESYSTATRT

Query:  VNLKFEQWITSDVLLLCWIYNSMTPDVALQRMGFYTAKDISEAIQDLFGVQSKAEEDFLRHTFQTT
        VN K+E+WIT+D+LLL W+YNSMTP+V +Q MGF  AKD+ EA QDLFG+QS+A+EDFL  TFQTT
Subjt:  VNLKFEQWITSDVLLLCWIYNSMTPDVALQRMGFYTAKDISEAIQDLFGVQSKAEEDFLRHTFQTT

TYK02246.1 uncharacterized protein E5676_scaffold18G00450 [Cucumis melo var. makuwa]5.4e-4563.98Show/hide
Query:  MANAASIVRSSTINFSIPPLNQLLNQLTSVKLDRGNYLLWKTLAFSILKSYKLEGHLTGEEPCPPKFVTNPIEESY----------------STATRTVN
        MANA S+V   T NFS PPLNQLLNQL+SVKLDRGNYLLWKTLA  I+KSYK EGHLTGE PCPPKF+TN I ES                 STAT+TVN
Subjt:  MANAASIVRSSTINFSIPPLNQLLNQLTSVKLDRGNYLLWKTLAFSILKSYKLEGHLTGEEPCPPKFVTNPIEESY----------------STATRTVN

Query:  LKFEQWITSDVLLLCWIYNSMTPDVALQRMGFYTAKDISEAIQDLFG------VQSKAEED
         KF+QW+TS +LLL WIYNSMT +VA Q  GF TAKD+ EAIQDLFG      VQ++A  D
Subjt:  LKFEQWITSDVLLLCWIYNSMTPDVALQRMGFYTAKDISEAIQDLFG------VQSKAEED

XP_016900937.1 PREDICTED: uncharacterized protein LOC107991116 [Cucumis melo]1.1e-4259.04Show/hide
Query:  MANAA--SIVRSSTINFSIPPLNQLLNQLTSVKLDRGNYLLWKTLAFSILKSYKLEGHLTGEEPCPPKFV---TNPIE-------------ESYSTATRT
        M NAA  S+  + T +F+ P LNQ+LNQLT++KLDRGNYLLWKTLA  ILKSYKL  HL GE PC PK +   T P E              S STA  T
Subjt:  MANAA--SIVRSSTINFSIPPLNQLLNQLTSVKLDRGNYLLWKTLAFSILKSYKLEGHLTGEEPCPPKFV---TNPIE-------------ESYSTATRT

Query:  VNLKFEQWITSDVLLLCWIYNSMTPDVALQRMGFYTAKDISEAIQDLFGVQSKAEEDFLRHTFQTT
        VN K+E+WIT+D+LLL W+YNSMTP+V +Q MGF  AKD+ EA QDLFG+QS+A+EDFL  TFQTT
Subjt:  VNLKFEQWITSDVLLLCWIYNSMTPDVALQRMGFYTAKDISEAIQDLFGVQSKAEEDFLRHTFQTT

XP_016901223.1 PREDICTED: uncharacterized protein LOC107991202 [Cucumis melo]3.9e-4365.54Show/hide
Query:  MANAASIVRSSTINFSIPPLNQLLNQLTSVKLDRGNYLLWKTLAFSILKSYKLEGHLTGEEPCPPKFVTNPIEESY----------------STATRTVN
        MANA S+V SST NFS PPLNQLLNQL+SVKLDR NYLLWKTLA  I+KSYK EG+LTGE PCPPKF+TN   ES                 S AT+TVN
Subjt:  MANAASIVRSSTINFSIPPLNQLLNQLTSVKLDRGNYLLWKTLAFSILKSYKLEGHLTGEEPCPPKFVTNPIEESY----------------STATRTVN

Query:  LKFEQWITSDVLLLCWIYNSMTPDVALQRMGFYTAKDISEAIQDLFGV
         KF+QW+TS +LLL WIYNSMT +VA Q  GF T KD+ EAIQDLFGV
Subjt:  LKFEQWITSDVLLLCWIYNSMTPDVALQRMGFYTAKDISEAIQDLFGV

XP_031745012.1 uncharacterized protein LOC116405217 [Cucumis sativus]8.4e-5472.67Show/hide
Query:  MANAASIVRSSTINFSIPPLNQLLNQLTSVKLDRGNYLLWKTLAFSILKSYKLEGHLTGEEPCPPKFVTNPI--EESYSTATRTVNLKFEQWITSDVLLL
        M N  S++ SST NFS PPLNQ+LNQL SVKLDRGNYLLW+TLA  ILKSYKL+GHLT E  CPPKF+ NP     S ST T+TVN KF+QW+T D+LLL
Subjt:  MANAASIVRSSTINFSIPPLNQLLNQLTSVKLDRGNYLLWKTLAFSILKSYKLEGHLTGEEPCPPKFVTNPI--EESYSTATRTVNLKFEQWITSDVLLL

Query:  CWIYNSMTPDVALQRMGFYTAKDISEAIQDLFGVQSKAEEDFLRHTFQTT
         W+YNSMTP+VALQ MGF TAKD+ EAIQDLFGVQ +AEEDFLRHTFQTT
Subjt:  CWIYNSMTPDVALQRMGFYTAKDISEAIQDLFGVQSKAEEDFLRHTFQTT

TrEMBL top hitse value%identityAlignment
A0A1S4DY80 uncharacterized protein LOC1079911165.5e-4359.04Show/hide
Query:  MANAA--SIVRSSTINFSIPPLNQLLNQLTSVKLDRGNYLLWKTLAFSILKSYKLEGHLTGEEPCPPKFV---TNPIE-------------ESYSTATRT
        M NAA  S+  + T +F+ P LNQ+LNQLT++KLDRGNYLLWKTLA  ILKSYKL  HL GE PC PK +   T P E              S STA  T
Subjt:  MANAA--SIVRSSTINFSIPPLNQLLNQLTSVKLDRGNYLLWKTLAFSILKSYKLEGHLTGEEPCPPKFV---TNPIE-------------ESYSTATRT

Query:  VNLKFEQWITSDVLLLCWIYNSMTPDVALQRMGFYTAKDISEAIQDLFGVQSKAEEDFLRHTFQTT
        VN K+E+WIT+D+LLL W+YNSMTP+V +Q MGF  AKD+ EA QDLFG+QS+A+EDFL  TFQTT
Subjt:  VNLKFEQWITSDVLLLCWIYNSMTPDVALQRMGFYTAKDISEAIQDLFGVQSKAEEDFLRHTFQTT

A0A1S4DZ26 uncharacterized protein LOC1079912021.9e-4365.54Show/hide
Query:  MANAASIVRSSTINFSIPPLNQLLNQLTSVKLDRGNYLLWKTLAFSILKSYKLEGHLTGEEPCPPKFVTNPIEESY----------------STATRTVN
        MANA S+V SST NFS PPLNQLLNQL+SVKLDR NYLLWKTLA  I+KSYK EG+LTGE PCPPKF+TN   ES                 S AT+TVN
Subjt:  MANAASIVRSSTINFSIPPLNQLLNQLTSVKLDRGNYLLWKTLAFSILKSYKLEGHLTGEEPCPPKFVTNPIEESY----------------STATRTVN

Query:  LKFEQWITSDVLLLCWIYNSMTPDVALQRMGFYTAKDISEAIQDLFGV
         KF+QW+TS +LLL WIYNSMT +VA Q  GF T KD+ EAIQDLFGV
Subjt:  LKFEQWITSDVLLLCWIYNSMTPDVALQRMGFYTAKDISEAIQDLFGV

A0A5A7SIT7 Uncharacterized protein1.8e-4159.64Show/hide
Query:  MANA---ASIVRSSTINFSIPPLNQLLNQLTSVKLDRGNYLLWKTLAFSILKSYKLEGHLTGEEPCPPKFV-------TNPIEE--------SYSTATRT
        MANA   A+    S+  FS PPLNQ+LNQL +VKLDR NYLLWKTLA  ILK YKLEGHLTGE PCP  FV       T   EE        S S   R 
Subjt:  MANA---ASIVRSSTINFSIPPLNQLLNQLTSVKLDRGNYLLWKTLAFSILKSYKLEGHLTGEEPCPPKFV-------TNPIEE--------SYSTATRT

Query:  VNLKFEQWITSDVLLLCWIYNSMTPDVALQRMGFYTAKDISEAIQDLFGVQSKAEEDFLRHTFQTT
        VN  FEQW+T+D+LLL W+YNSMTPDVA+Q MGF   +D+ +A QD FGVQS+AEEDFLR   QTT
Subjt:  VNLKFEQWITSDVLLLCWIYNSMTPDVALQRMGFYTAKDISEAIQDLFGVQSKAEEDFLRHTFQTT

A0A5A7VPY0 Uncharacterized protein5.5e-4359.04Show/hide
Query:  MANAA--SIVRSSTINFSIPPLNQLLNQLTSVKLDRGNYLLWKTLAFSILKSYKLEGHLTGEEPCPPKFV---TNPIE-------------ESYSTATRT
        M NAA  S+  + T +F+ P LNQ+LNQLT++KLDRGNYLLWKTLA  ILKSYKL  HL GE PC PK +   T P E              S STA  T
Subjt:  MANAA--SIVRSSTINFSIPPLNQLLNQLTSVKLDRGNYLLWKTLAFSILKSYKLEGHLTGEEPCPPKFV---TNPIE-------------ESYSTATRT

Query:  VNLKFEQWITSDVLLLCWIYNSMTPDVALQRMGFYTAKDISEAIQDLFGVQSKAEEDFLRHTFQTT
        VN K+E+WIT+D+LLL W+YNSMTP+V +Q MGF  AKD+ EA QDLFG+QS+A+EDFL  TFQTT
Subjt:  VNLKFEQWITSDVLLLCWIYNSMTPDVALQRMGFYTAKDISEAIQDLFGVQSKAEEDFLRHTFQTT

A0A5D3BVJ1 Uncharacterized protein2.6e-4563.98Show/hide
Query:  MANAASIVRSSTINFSIPPLNQLLNQLTSVKLDRGNYLLWKTLAFSILKSYKLEGHLTGEEPCPPKFVTNPIEESY----------------STATRTVN
        MANA S+V   T NFS PPLNQLLNQL+SVKLDRGNYLLWKTLA  I+KSYK EGHLTGE PCPPKF+TN I ES                 STAT+TVN
Subjt:  MANAASIVRSSTINFSIPPLNQLLNQLTSVKLDRGNYLLWKTLAFSILKSYKLEGHLTGEEPCPPKFVTNPIEESY----------------STATRTVN

Query:  LKFEQWITSDVLLLCWIYNSMTPDVALQRMGFYTAKDISEAIQDLFG------VQSKAEED
         KF+QW+TS +LLL WIYNSMT +VA Q  GF TAKD+ EAIQDLFG      VQ++A  D
Subjt:  LKFEQWITSDVLLLCWIYNSMTPDVALQRMGFYTAKDISEAIQDLFG------VQSKAEED

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCCAACGCCGCCTCCATCGTCAGATCATCAACCATAAATTTCAGCATCCCACCTCTAAACCAACTACTAAACCAATTGACCTCTGTGAAACTTGATCGTGGAAATTA
TTTGTTGTGGAAAACTCTAGCCTTTTCCATCTTGAAGAGTTATAAATTGGAAGGCCATTTAACCGGTGAAGAACCATGCCCTCCAAAATTCGTCACAAATCCAATCGAAG
AATCATACTCCACTGCAACAAGGACGGTCAATTTGAAATTTGAACAATGGATTACCTCTGATGTGTTACTTTTATGTTGGATTTATAACTCAATGACACCAGATGTTGCT
CTTCAACGGATGGGATTCTACACTGCAAAAGATATTTCGGAAGCTATACAAGACTTATTTGGAGTACAATCAAAGGCAGAGGAGGATTTTCTTCGACACACATTTCAGAC
TACCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGCCAACGCCGCCTCCATCGTCAGATCATCAACCATAAATTTCAGCATCCCACCTCTAAACCAACTACTAAACCAATTGACCTCTGTGAAACTTGATCGTGGAAATTA
TTTGTTGTGGAAAACTCTAGCCTTTTCCATCTTGAAGAGTTATAAATTGGAAGGCCATTTAACCGGTGAAGAACCATGCCCTCCAAAATTCGTCACAAATCCAATCGAAG
AATCATACTCCACTGCAACAAGGACGGTCAATTTGAAATTTGAACAATGGATTACCTCTGATGTGTTACTTTTATGTTGGATTTATAACTCAATGACACCAGATGTTGCT
CTTCAACGGATGGGATTCTACACTGCAAAAGATATTTCGGAAGCTATACAAGACTTATTTGGAGTACAATCAAAGGCAGAGGAGGATTTTCTTCGACACACATTTCAGAC
TACCTAA
Protein sequenceShow/hide protein sequence
MANAASIVRSSTINFSIPPLNQLLNQLTSVKLDRGNYLLWKTLAFSILKSYKLEGHLTGEEPCPPKFVTNPIEESYSTATRTVNLKFEQWITSDVLLLCWIYNSMTPDVA
LQRMGFYTAKDISEAIQDLFGVQSKAEEDFLRHTFQTT