CuGenDBv2

Gene ID	PI0004485
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Beta-galactosidase
Genome location	chr07:16067800..16068801
RNA-Seq Expression	PI0004485
Synteny	PI0004485
Gene Ontology terms	GO:0006259 - DNA metabolic process (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0003824 - catalytic activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0034386.1 Beta-galactosidase [Cucumis melo var. makuwa]

6.4e-82

56.27

Show/hide

Query:  LPHALSLPGAWAHAPPPFHLTAKMNGFAMAPPVQPSNPSANLHVHVPLLLSDHGQPPIPT------TQPPLSVNPSQQPYFHGTGVDQNYNRLGFEVGET
        L HA  + GAWAHAPPPFH+TA    F     VQPSNPS + H H P   S  GQ P         ++  L V+P QQP F G G+DQ  NR   E GE+
Subjt:  LPHALSLPGAWAHAPPPFHLTAKMNGFAMAPPVQPSNPSANLHVHVPLLLSDHGQPPIPT------TQPPLSVNPSQQPYFHGTGVDQNYNRLGFEVGET

Query:  SVQSKNL--------------------------------------------------MFLEGRQQFGFLTGEIPRPPPGDDQERLWRVDDSFIRSMLINS
        S  SK                                                    MFLEGR QFGFLTGEI RPPPGD  ERLW+ +DS IRSMLINS
Subjt:  SVQSKNL--------------------------------------------------MFLEGRQQFGFLTGEIPRPPPGDDQERLWRVDDSFIRSMLINS

Query:  MESQIGKPLLYATTAKDLWDSTQKLYLKRQNASRLHTLRKQVHECKQEAMDVTSYFNKLSLLWQEMDLCRDIVWDTSNGSLQFAKIEEADRVYDFLAGLH
        ME QIGKPLLYATTAKDLWD+TQ LY KRQNASRL+TLRKQVH CKQ  +DVT+YFNKLSLLWQEMDLCR+ VWDT N S Q+AK+EEADRVYDFLAGL+
Subjt:  MESQIGKPLLYATTAKDLWDSTQKLYLKRQNASRLHTLRKQVHECKQEAMDVTSYFNKLSLLWQEMDLCRDIVWDTSNGSLQFAKIEEADRVYDFLAGLH

Query:  PKFDTVCRCIL
        PKFD VC  IL
Subjt:  PKFDTVCRCIL

KAA0061456.1 Beta-galactosidase [Cucumis melo var. makuwa]

1.3e-82

63.06

Show/hide

Query:  HALSLPGAWAHAPPPFHLTAKMNGFAMAPPVQPSNPSANLHVHVPLLLSDHGQPPIPT------TQPPLSVNPSQQPYFHGTGVDQNYNRLGFEVGETS-
        HA  + GAWAHAPPPFH+TA    F     VQPSNP  + H H   L +  GQ P         ++  L V+  QQP F G G+DQ  NR   E GE S 
Subjt:  HALSLPGAWAHAPPPFHLTAKMNGFAMAPPVQPSNPSANLHVHVPLLLSDHGQPPIPT------TQPPLSVNPSQQPYFHGTGVDQNYNRLGFEVGETS-

Query:  --------VQSKNLMFLEGRQQFGFLTGEIPRPPPGDDQERLWRVDDSFIRSMLINSMESQIGKPLLYATTAKDLWDSTQKLYLKRQNASRLHTLRKQVH
                + SKN MFLEGR QFGFLTGE  RPPP D  ERLWR +DS IRSMLINSME QIGKPLLYA TAKDLWD+TQ LY KRQNASRL+TLRKQV+
Subjt:  --------VQSKNLMFLEGRQQFGFLTGEIPRPPPGDDQERLWRVDDSFIRSMLINSMESQIGKPLLYATTAKDLWDSTQKLYLKRQNASRLHTLRKQVH

Query:  ECKQEAMDVTSYFNKLSLLWQEMDLCRDIVWDTSNGSLQFAKIEEADRVYDFLAGLHPKFDTVCRCIL
         CKQ  +DVT+YFNKLSLLWQEMDLCR+ VWDT N S Q+AK+EEADRVYDFLAGL+PKFD VC  IL
Subjt:  ECKQEAMDVTSYFNKLSLLWQEMDLCRDIVWDTSNGSLQFAKIEEADRVYDFLAGLHPKFDTVCRCIL

TYJ97256.1 Beta-galactosidase [Cucumis melo var. makuwa]

6.4e-82

56.31

Show/hide

Query:  HALSLPGAWAHAPPPFHLTAKMNGFAMAPPVQPSNPSANLHVHVPLLLSDHGQPPIPT------TQPPLSVNPSQQPYFHGTGVDQNYNRLGFEVGETSV
        HA  + GAWAHAPPPFH+TA    F     VQPSNPS + H H P   S  GQ P         ++  L V+P QQP F G G+DQ  NR   E GE+S 
Subjt:  HALSLPGAWAHAPPPFHLTAKMNGFAMAPPVQPSNPSANLHVHVPLLLSDHGQPPIPT------TQPPLSVNPSQQPYFHGTGVDQNYNRLGFEVGETSV

Query:  QSKNL--------------------------------------------------MFLEGRQQFGFLTGEIPRPPPGDDQERLWRVDDSFIRSMLINSME
         SK                                                    MFLEGR QFGFLTGEI RPPPGD  ERLW+ +DS IRSMLINSME
Subjt:  QSKNL--------------------------------------------------MFLEGRQQFGFLTGEIPRPPPGDDQERLWRVDDSFIRSMLINSME

Query:  SQIGKPLLYATTAKDLWDSTQKLYLKRQNASRLHTLRKQVHECKQEAMDVTSYFNKLSLLWQEMDLCRDIVWDTSNGSLQFAKIEEADRVYDFLAGLHPK
         QIGKPLLYATTAKDLWD+TQ LY KRQNASRL+TLRKQVH CKQ  +DVT+YFNKLSLLWQEMDLCR+ VWDT N S Q+AK+EEADRVYDFLAGL+PK
Subjt:  SQIGKPLLYATTAKDLWDSTQKLYLKRQNASRLHTLRKQVHECKQEAMDVTSYFNKLSLLWQEMDLCRDIVWDTSNGSLQFAKIEEADRVYDFLAGLHPK

Query:  FDTVCRCIL
        FD VC  IL
Subjt:  FDTVCRCIL

TYJ99952.1 Beta-galactosidase [Cucumis melo var. makuwa]

6.4e-82

55.87

Show/hide

Query:  STADLPHALSLPGAWAHAPPPFHLTAKMNGFAMAPPVQPSNPSANLHVHVPLLLSDHGQPPIPT------TQPPLSVNPSQQPYFHGTGVDQNYNRLGFE
        S   L HA  + GAWAHAPPPFH+TA    F     VQPSNPS + H H P   S  GQ P         ++  L V+P QQP F G G+DQ  NR   E
Subjt:  STADLPHALSLPGAWAHAPPPFHLTAKMNGFAMAPPVQPSNPSANLHVHVPLLLSDHGQPPIPT------TQPPLSVNPSQQPYFHGTGVDQNYNRLGFE

Query:  VGETSVQSKNL--------------------------------------------------MFLEGRQQFGFLTGEIPRPPPGDDQERLWRVDDSFIRSM
         GE+S  SK                                                    MFLEGR QFGFLTGEI RPPPGD  ERLW+ +DS IRSM
Subjt:  VGETSVQSKNL--------------------------------------------------MFLEGRQQFGFLTGEIPRPPPGDDQERLWRVDDSFIRSM

Query:  LINSMESQIGKPLLYATTAKDLWDSTQKLYLKRQNASRLHTLRKQVHECKQEAMDVTSYFNKLSLLWQEMDLCRDIVWDTSNGSLQFAKIEEADRVYDFL
        LINSME QIGKPLLYATTAKDLWD+TQ LY KRQNASRL+TLRKQVH CKQ  +DVT+YFNKLSLLWQEMDLCR+ VWDT N S Q+AK+EEADRVYDFL
Subjt:  LINSMESQIGKPLLYATTAKDLWDSTQKLYLKRQNASRLHTLRKQVHECKQEAMDVTSYFNKLSLLWQEMDLCRDIVWDTSNGSLQFAKIEEADRVYDFL

Query:  AGLHPKFDTVCRCIL
        AGL+PKFD VC  IL
Subjt:  AGLHPKFDTVCRCIL

TYK16957.1 ATP-dependent DNA helicase 2 subunit KU70 [Cucumis melo var. makuwa]

6.4e-82

56.27

Show/hide

Query:  LPHALSLPGAWAHAPPPFHLTAKMNGFAMAPPVQPSNPSANLHVHVPLLLSDHGQPPIPT------TQPPLSVNPSQQPYFHGTGVDQNYNRLGFEVGET
        L HA  + GAWAHAPPPFH+TA    F     VQPSNPS + H H P   S  GQ P         ++  L V+P QQP F G G+DQ  NR   E GE+
Subjt:  LPHALSLPGAWAHAPPPFHLTAKMNGFAMAPPVQPSNPSANLHVHVPLLLSDHGQPPIPT------TQPPLSVNPSQQPYFHGTGVDQNYNRLGFEVGET

Query:  SVQSKNL--------------------------------------------------MFLEGRQQFGFLTGEIPRPPPGDDQERLWRVDDSFIRSMLINS
        S  SK                                                    MFLEGR QFGFLTGEI RPPPGD  ERLW+ +DS IRSMLINS
Subjt:  SVQSKNL--------------------------------------------------MFLEGRQQFGFLTGEIPRPPPGDDQERLWRVDDSFIRSMLINS

Query:  MESQIGKPLLYATTAKDLWDSTQKLYLKRQNASRLHTLRKQVHECKQEAMDVTSYFNKLSLLWQEMDLCRDIVWDTSNGSLQFAKIEEADRVYDFLAGLH
        ME QIGKPLLYATTAKDLWD+TQ LY KRQNASRL+TLRKQVH CKQ  +DVT+YFNKLSLLWQEMDLCR+ VWDT N S Q+AK+EEADRVYDFLAGL+
Subjt:  MESQIGKPLLYATTAKDLWDSTQKLYLKRQNASRLHTLRKQVHECKQEAMDVTSYFNKLSLLWQEMDLCRDIVWDTSNGSLQFAKIEEADRVYDFLAGLH

Query:  PKFDTVCRCIL
        PKFD VC  IL
Subjt:  PKFDTVCRCIL

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SM64 Beta-galactosidase

3.1e-82

56.27

Show/hide

Query:  LPHALSLPGAWAHAPPPFHLTAKMNGFAMAPPVQPSNPSANLHVHVPLLLSDHGQPPIPT------TQPPLSVNPSQQPYFHGTGVDQNYNRLGFEVGET
        L HA  + GAWAHAPPPFH+TA    F     VQPSNPS + H H P   S  GQ P         ++  L V+P QQP F G G+DQ  NR   E GE+
Subjt:  LPHALSLPGAWAHAPPPFHLTAKMNGFAMAPPVQPSNPSANLHVHVPLLLSDHGQPPIPT------TQPPLSVNPSQQPYFHGTGVDQNYNRLGFEVGET

Query:  SVQSKNL--------------------------------------------------MFLEGRQQFGFLTGEIPRPPPGDDQERLWRVDDSFIRSMLINS
        S  SK                                                    MFLEGR QFGFLTGEI RPPPGD  ERLW+ +DS IRSMLINS
Subjt:  SVQSKNL--------------------------------------------------MFLEGRQQFGFLTGEIPRPPPGDDQERLWRVDDSFIRSMLINS

Query:  MESQIGKPLLYATTAKDLWDSTQKLYLKRQNASRLHTLRKQVHECKQEAMDVTSYFNKLSLLWQEMDLCRDIVWDTSNGSLQFAKIEEADRVYDFLAGLH
        ME QIGKPLLYATTAKDLWD+TQ LY KRQNASRL+TLRKQVH CKQ  +DVT+YFNKLSLLWQEMDLCR+ VWDT N S Q+AK+EEADRVYDFLAGL+
Subjt:  MESQIGKPLLYATTAKDLWDSTQKLYLKRQNASRLHTLRKQVHECKQEAMDVTSYFNKLSLLWQEMDLCRDIVWDTSNGSLQFAKIEEADRVYDFLAGLH

Query:  PKFDTVCRCIL
        PKFD VC  IL
Subjt:  PKFDTVCRCIL

A0A5A7UGB2 Beta-galactosidase

3.1e-82

56.27

Show/hide

Query:  LPHALSLPGAWAHAPPPFHLTAKMNGFAMAPPVQPSNPSANLHVHVPLLLSDHGQPPIPT------TQPPLSVNPSQQPYFHGTGVDQNYNRLGFEVGET
        L HA  + GAWAHAPPPFH+TA    F     VQPSNPS + H H P   S  GQ P         ++  L V+P QQP F G G+DQ  NR   E GE+
Subjt:  LPHALSLPGAWAHAPPPFHLTAKMNGFAMAPPVQPSNPSANLHVHVPLLLSDHGQPPIPT------TQPPLSVNPSQQPYFHGTGVDQNYNRLGFEVGET

Query:  SVQSKNL--------------------------------------------------MFLEGRQQFGFLTGEIPRPPPGDDQERLWRVDDSFIRSMLINS
        S  SK                                                    MFLEGR QFGFLTGEI RPPPGD  ERLW+ +DS IRSMLINS
Subjt:  SVQSKNL--------------------------------------------------MFLEGRQQFGFLTGEIPRPPPGDDQERLWRVDDSFIRSMLINS

Query:  MESQIGKPLLYATTAKDLWDSTQKLYLKRQNASRLHTLRKQVHECKQEAMDVTSYFNKLSLLWQEMDLCRDIVWDTSNGSLQFAKIEEADRVYDFLAGLH
        ME QIGKPLLYATTAKDLWD+TQ LY KRQNASRL+TLRKQVH CKQ  +DVT+YFNKLSLLWQEMDLCR+ VWDT N S Q+AK+EEADRVYDFLAGL+
Subjt:  MESQIGKPLLYATTAKDLWDSTQKLYLKRQNASRLHTLRKQVHECKQEAMDVTSYFNKLSLLWQEMDLCRDIVWDTSNGSLQFAKIEEADRVYDFLAGLH

Query:  PKFDTVCRCIL
        PKFD VC  IL
Subjt:  PKFDTVCRCIL

A0A5A7V4Q4 Beta-galactosidase

6.3e-83

63.06

Show/hide

Query:  HALSLPGAWAHAPPPFHLTAKMNGFAMAPPVQPSNPSANLHVHVPLLLSDHGQPPIPT------TQPPLSVNPSQQPYFHGTGVDQNYNRLGFEVGETS-
        HA  + GAWAHAPPPFH+TA    F     VQPSNP  + H H   L +  GQ P         ++  L V+  QQP F G G+DQ  NR   E GE S 
Subjt:  HALSLPGAWAHAPPPFHLTAKMNGFAMAPPVQPSNPSANLHVHVPLLLSDHGQPPIPT------TQPPLSVNPSQQPYFHGTGVDQNYNRLGFEVGETS-

Query:  --------VQSKNLMFLEGRQQFGFLTGEIPRPPPGDDQERLWRVDDSFIRSMLINSMESQIGKPLLYATTAKDLWDSTQKLYLKRQNASRLHTLRKQVH
                + SKN MFLEGR QFGFLTGE  RPPP D  ERLWR +DS IRSMLINSME QIGKPLLYA TAKDLWD+TQ LY KRQNASRL+TLRKQV+
Subjt:  --------VQSKNLMFLEGRQQFGFLTGEIPRPPPGDDQERLWRVDDSFIRSMLINSMESQIGKPLLYATTAKDLWDSTQKLYLKRQNASRLHTLRKQVH

Query:  ECKQEAMDVTSYFNKLSLLWQEMDLCRDIVWDTSNGSLQFAKIEEADRVYDFLAGLHPKFDTVCRCIL
         CKQ  +DVT+YFNKLSLLWQEMDLCR+ VWDT N S Q+AK+EEADRVYDFLAGL+PKFD VC  IL
Subjt:  ECKQEAMDVTSYFNKLSLLWQEMDLCRDIVWDTSNGSLQFAKIEEADRVYDFLAGLHPKFDTVCRCIL

A0A5D3BJK7 Beta-galactosidase

3.1e-82

55.87

Show/hide

Query:  STADLPHALSLPGAWAHAPPPFHLTAKMNGFAMAPPVQPSNPSANLHVHVPLLLSDHGQPPIPT------TQPPLSVNPSQQPYFHGTGVDQNYNRLGFE
        S   L HA  + GAWAHAPPPFH+TA    F     VQPSNPS + H H P   S  GQ P         ++  L V+P QQP F G G+DQ  NR   E
Subjt:  STADLPHALSLPGAWAHAPPPFHLTAKMNGFAMAPPVQPSNPSANLHVHVPLLLSDHGQPPIPT------TQPPLSVNPSQQPYFHGTGVDQNYNRLGFE

Query:  VGETSVQSKNL--------------------------------------------------MFLEGRQQFGFLTGEIPRPPPGDDQERLWRVDDSFIRSM
         GE+S  SK                                                    MFLEGR QFGFLTGEI RPPPGD  ERLW+ +DS IRSM
Subjt:  VGETSVQSKNL--------------------------------------------------MFLEGRQQFGFLTGEIPRPPPGDDQERLWRVDDSFIRSM

Query:  LINSMESQIGKPLLYATTAKDLWDSTQKLYLKRQNASRLHTLRKQVHECKQEAMDVTSYFNKLSLLWQEMDLCRDIVWDTSNGSLQFAKIEEADRVYDFL
        LINSME QIGKPLLYATTAKDLWD+TQ LY KRQNASRL+TLRKQVH CKQ  +DVT+YFNKLSLLWQEMDLCR+ VWDT N S Q+AK+EEADRVYDFL
Subjt:  LINSMESQIGKPLLYATTAKDLWDSTQKLYLKRQNASRLHTLRKQVHECKQEAMDVTSYFNKLSLLWQEMDLCRDIVWDTSNGSLQFAKIEEADRVYDFL

Query:  AGLHPKFDTVCRCIL
        AGL+PKFD VC  IL
Subjt:  AGLHPKFDTVCRCIL

A0A5D3C4T4 Beta-galactosidase

3.1e-82

56.27

Show/hide

Query:  LPHALSLPGAWAHAPPPFHLTAKMNGFAMAPPVQPSNPSANLHVHVPLLLSDHGQPPIPT------TQPPLSVNPSQQPYFHGTGVDQNYNRLGFEVGET
        L HA  + GAWAHAPPPFH+TA    F     VQPSNPS + H H P   S  GQ P         ++  L V+P QQP F G G+DQ  NR   E GE+
Subjt:  LPHALSLPGAWAHAPPPFHLTAKMNGFAMAPPVQPSNPSANLHVHVPLLLSDHGQPPIPT------TQPPLSVNPSQQPYFHGTGVDQNYNRLGFEVGET

Query:  SVQSKNL--------------------------------------------------MFLEGRQQFGFLTGEIPRPPPGDDQERLWRVDDSFIRSMLINS
        S  SK                                                    MFLEGR QFGFLTGEI RPPPGD  ERLW+ +DS IRSMLINS
Subjt:  SVQSKNL--------------------------------------------------MFLEGRQQFGFLTGEIPRPPPGDDQERLWRVDDSFIRSMLINS

Query:  MESQIGKPLLYATTAKDLWDSTQKLYLKRQNASRLHTLRKQVHECKQEAMDVTSYFNKLSLLWQEMDLCRDIVWDTSNGSLQFAKIEEADRVYDFLAGLH
        ME QIGKPLLYATTAKDLWD+TQ LY KRQNASRL+TLRKQVH CKQ  +DVT+YFNKLSLLWQEMDLCR+ VWDT N S Q+AK+EEADRVYDFLAGL+
Subjt:  MESQIGKPLLYATTAKDLWDSTQKLYLKRQNASRLHTLRKQVHECKQEAMDVTSYFNKLSLLWQEMDLCRDIVWDTSNGSLQFAKIEEADRVYDFLAGLH

Query:  PKFDTVCRCIL
        PKFD VC  IL
Subjt:  PKFDTVCRCIL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G21280.1 CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); Has 707 Blast hits to 705 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

9.8e-12

26.03

Show/hide

Query:  FLEGRQQFGFLTGEIPRPPPGDDQERLWRVDDSFIRSMLINSMESQIGKPLLYATTAKDLWDSTQKLYLKRQNASRLHTLRKQVHECKQEAMDVTSYFNK
        FL   ++FGF+ G +P+P P     + W   ++ +   L+NSM  ++ + ++YA TA  +W+  +++++   +  +++ LR+++   +Q    V  YF K
Subjt:  FLEGRQQFGFLTGEIPRPPPGDDQERLWRVDDSFIRSMLINSMESQIGKPLLYATTAKDLWDSTQKLYLKRQNASRLHTLRKQVHECKQEAMDVTSYFNK

Query:  LSLLWQEMDLCRDIVWDTSNG-----SLQFAKIEEADRVYDFLAGL
        LS +W E+     I      G     + +  +  E ++ Y+FL GL
Subjt:  LSLLWQEMDLCRDIVWDTSNG-----SLQFAKIEEADRVYDFLAGL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGCCGACAATCACGTCTGTCACATCCACAGAGTTGTCCGGGCAGCACAGCACTGCAGATCTGCCTCACGCACTATCGTTGCCAGGCGCATGGGCCCACGCGCCGCCGCC
TTTTCATCTCACCGCCAAGATGAATGGATTCGCCATGGCACCGCCCGTCCAACCGTCTAACCCTTCTGCCAATCTGCACGTTCACGTGCCGCTGCTGCTCTCTGACCATG
GACAGCCGCCTATTCCGACTACCCAGCCGCCGTTGTCTGTTAATCCTTCACAGCAACCTTACTTCCATGGTACCGGAGTTGACCAAAACTACAACAGACTTGGGTTTGAA
GTTGGCGAGACCTCGGTGCAATCCAAAAACCTGATGTTTCTTGAGGGACGACAACAATTTGGGTTTCTGACGGGTGAGATTCCTCGTCCTCCACCTGGTGATGATCAAGA
ACGCCTTTGGAGAGTAGACGACTCCTTTATTCGGTCCATGCTGATCAATAGTATGGAATCTCAGATAGGCAAGCCCCTCCTGTATGCTACTACTGCAAAGGATCTCTGGG
ACTCCACTCAGAAACTTTACTTGAAACGTCAGAATGCTTCCCGTCTGCATACCTTGAGGAAACAAGTCCATGAATGCAAGCAAGAAGCAATGGACGTCACTTCTTATTTT
AACAAACTTTCCCTGTTGTGGCAAGAAATGGATCTGTGTAGAGATATTGTTTGGGATACTTCTAATGGCAGTTTACAGTTTGCCAAGATAGAAGAAGCGGATCGTGTGTA
TGATTTTCTTGCCGGCCTCCATCCTAAGTTTGATACTGTTTGTCGTTGTATCCTTGTAATGTCTCTACTAGTTGATGATGATGTCTATACTAGTAATGTCTTGTTATAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MPTITSVTSTELSGQHSTADLPHALSLPGAWAHAPPPFHLTAKMNGFAMAPPVQPSNPSANLHVHVPLLLSDHGQPPIPTTQPPLSVNPSQQPYFHGTGVDQNYNRLGFE
VGETSVQSKNLMFLEGRQQFGFLTGEIPRPPPGDDQERLWRVDDSFIRSMLINSMESQIGKPLLYATTAKDLWDSTQKLYLKRQNASRLHTLRKQVHECKQEAMDVTSYF
NKLSLLWQEMDLCRDIVWDTSNGSLQFAKIEEADRVYDFLAGLHPKFDTVCRCILVMSLLVDDDVYTSNVLL

PI0004485 (gene) of Melon (PI 482460) v1 genome