CuGenDBv2

Gene ID	PI0004517
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Ribonuclease H
Genome location	chr10:4355707..4356300
RNA-Seq Expression	PI0004517
Synteny	PI0004517
Gene Ontology terms	GO:0006259 - DNA metabolic process (biological process) GO:0090502 - RNA phosphodiester bond hydrolysis, endonucleolytic (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0047477.1 uncharacterized protein E6C27_scaffold498G00940 [Cucumis melo var. makuwa]

1.3e-62

69.31

Show/hide

Query:  MDKGGAKRIEKESLEACLPEKRTTEGFDPKAYKLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVPITGKGKAKVA
        ++KG AK+IEK+ L+A LPE+RT EGFDPKAYKLMAKAGYDFTT TE KS KIFDER  LSPTQ+KLQKQGY IPNSR G+GY+SSEPV ITGKGKAKVA
Subjt:  MDKGGAKRIEKESLEACLPEKRTTEGFDPKAYKLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVPITGKGKAKVA

Query:  DTCHITFEECNDSKEDNKNESQRSSVFDRITSSTTHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSTFKRLSVSVTRDQ
        +TCHIT EE  DS+E  K  SQRSSVFDRI  S    SVFQR++    +D N+ S   STRLSAFQRLNT          TP TR S FKRLSVSVTRDQ
Subjt:  DTCHITFEECNDSKEDNKNESQRSSVFDRITSSTTHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSTFKRLSVSVTRDQ

Query:  KK
        KK
Subjt:  KK

KAA0052361.1 uncharacterized protein E6C27_scaffold207G002040 [Cucumis melo var. makuwa]

5.0e-62

68.81

Show/hide

Query:  MDKGGAKRIEKESLEACLPEKRTTEGFDPKAYKLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVPITGKGKAKVA
        ++KG AK+IEK+ LEA LPE+RT EGFDPKAYKLMAKAGYDFTT TE KS KI DER   SPTQ+KLQKQGY IPNSR G+GY+SSEPV ITGKGKAKVA
Subjt:  MDKGGAKRIEKESLEACLPEKRTTEGFDPKAYKLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVPITGKGKAKVA

Query:  DTCHITFEECNDSKEDNKNESQRSSVFDRITSSTTHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSTFKRLSVSVTRDQ
        +TCHIT EE  DS+E  K+ SQRSSVFDRI  S    SVFQR++    +D N+ S   STRLSAFQRLNT          TP TR S FKRLSVSVTRDQ
Subjt:  DTCHITFEECNDSKEDNKNESQRSSVFDRITSSTTHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSTFKRLSVSVTRDQ

Query:  KK
        KK
Subjt:  KK

TYJ98225.1 uncharacterized protein E5676_scaffold180G001270 [Cucumis melo var. makuwa]

1.3e-62

69.31

Show/hide

Query:  MDKGGAKRIEKESLEACLPEKRTTEGFDPKAYKLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVPITGKGKAKVA
        ++KG AK+IEK+ L+A LPE+RT EGFDPKAYKLMAKAGYDFTT TE KS KIFDER  LSPTQ+KLQKQGY IPNSR G+GY+SSEPV ITGKGKAKVA
Subjt:  MDKGGAKRIEKESLEACLPEKRTTEGFDPKAYKLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVPITGKGKAKVA

Query:  DTCHITFEECNDSKEDNKNESQRSSVFDRITSSTTHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSTFKRLSVSVTRDQ
        +TCHIT EE  DS+E  K  SQRSSVFDRI  S    SVFQR++    +D N+ S   STRLSAFQRLNT          TP TR S FKRLSVSVTRDQ
Subjt:  DTCHITFEECNDSKEDNKNESQRSSVFDRITSSTTHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSTFKRLSVSVTRDQ

Query:  KK
        KK
Subjt:  KK

TYK06199.1 uncharacterized protein E5676_scaffold287G00570 [Cucumis melo var. makuwa]

2.9e-62

68.81

Show/hide

Query:  MDKGGAKRIEKESLEACLPEKRTTEGFDPKAYKLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVPITGKGKAKVA
        ++KG AK+IEK+ LEA LPE+RT +GFDPKAYKLMAKAGYDFTT TE KS KIFDER  LSPTQ+KLQKQGY IPNSR G+GY SSEPV ITGKGK KVA
Subjt:  MDKGGAKRIEKESLEACLPEKRTTEGFDPKAYKLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVPITGKGKAKVA

Query:  DTCHITFEECNDSKEDNKNESQRSSVFDRITSSTTHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSTFKRLSVSVTRDQ
        +TCHIT EE  DS+E  K+ SQRSSVFDRI  S    SVFQR++    +D N+ S   STRLSAFQRLNT          TP TR S FKRLSVSVTRDQ
Subjt:  DTCHITFEECNDSKEDNKNESQRSSVFDRITSSTTHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSTFKRLSVSVTRDQ

Query:  KK
        KK
Subjt:  KK

TYK18071.1 uncharacterized protein E5676_scaffold306G004020 [Cucumis melo var. makuwa]

1.3e-62

69.31

Show/hide

Query:  MDKGGAKRIEKESLEACLPEKRTTEGFDPKAYKLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVPITGKGKAKVA
        ++KG AK+IEK+ L+A LPE+RT EGFDPKAYKLMAKAGYDFTT TE KS KIFDER  LSPTQ+KLQKQGY IPNSR G+GY+SSEPV ITGKGKAKVA
Subjt:  MDKGGAKRIEKESLEACLPEKRTTEGFDPKAYKLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVPITGKGKAKVA

Query:  DTCHITFEECNDSKEDNKNESQRSSVFDRITSSTTHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSTFKRLSVSVTRDQ
        +TCHIT EE  DS+E  K  SQRSSVFDRI  S    SVFQR++    +D N+ S   STRLSAFQRLNT          TP TR S FKRLSVSVTRDQ
Subjt:  DTCHITFEECNDSKEDNKNESQRSSVFDRITSSTTHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSTFKRLSVSVTRDQ

Query:  KK
        KK
Subjt:  KK

TrEMBL top hits

e value

%identity

Alignment

A0A5A7TZU9 Ribonuclease H

6.4e-63

69.31

Show/hide

Query:  MDKGGAKRIEKESLEACLPEKRTTEGFDPKAYKLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVPITGKGKAKVA
        ++KG AK+IEK+ L+A LPE+RT EGFDPKAYKLMAKAGYDFTT TE KS KIFDER  LSPTQ+KLQKQGY IPNSR G+GY+SSEPV ITGKGKAKVA
Subjt:  MDKGGAKRIEKESLEACLPEKRTTEGFDPKAYKLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVPITGKGKAKVA

Query:  DTCHITFEECNDSKEDNKNESQRSSVFDRITSSTTHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSTFKRLSVSVTRDQ
        +TCHIT EE  DS+E  K  SQRSSVFDRI  S    SVFQR++    +D N+ S   STRLSAFQRLNT          TP TR S FKRLSVSVTRDQ
Subjt:  DTCHITFEECNDSKEDNKNESQRSSVFDRITSSTTHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSTFKRLSVSVTRDQ

Query:  KK
        KK
Subjt:  KK

A0A5A7UFR3 RNase H domain-containing protein

2.4e-62

68.81

Show/hide

Query:  MDKGGAKRIEKESLEACLPEKRTTEGFDPKAYKLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVPITGKGKAKVA
        ++KG AK+IEK+ LEA LPE+RT EGFDPKAYKLMAKAGYDFTT TE KS KI DER   SPTQ+KLQKQGY IPNSR G+GY+SSEPV ITGKGKAKVA
Subjt:  MDKGGAKRIEKESLEACLPEKRTTEGFDPKAYKLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVPITGKGKAKVA

Query:  DTCHITFEECNDSKEDNKNESQRSSVFDRITSSTTHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSTFKRLSVSVTRDQ
        +TCHIT EE  DS+E  K+ SQRSSVFDRI  S    SVFQR++    +D N+ S   STRLSAFQRLNT          TP TR S FKRLSVSVTRDQ
Subjt:  DTCHITFEECNDSKEDNKNESQRSSVFDRITSSTTHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSTFKRLSVSVTRDQ

Query:  KK
        KK
Subjt:  KK

A0A5D3BIH8 Uncharacterized protein

6.4e-63

69.31

Show/hide

Query:  MDKGGAKRIEKESLEACLPEKRTTEGFDPKAYKLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVPITGKGKAKVA
        ++KG AK+IEK+ L+A LPE+RT EGFDPKAYKLMAKAGYDFTT TE KS KIFDER  LSPTQ+KLQKQGY IPNSR G+GY+SSEPV ITGKGKAKVA
Subjt:  MDKGGAKRIEKESLEACLPEKRTTEGFDPKAYKLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVPITGKGKAKVA

Query:  DTCHITFEECNDSKEDNKNESQRSSVFDRITSSTTHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSTFKRLSVSVTRDQ
        +TCHIT EE  DS+E  K  SQRSSVFDRI  S    SVFQR++    +D N+ S   STRLSAFQRLNT          TP TR S FKRLSVSVTRDQ
Subjt:  DTCHITFEECNDSKEDNKNESQRSSVFDRITSSTTHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSTFKRLSVSVTRDQ

Query:  KK
        KK
Subjt:  KK

A0A5D3C783 Ribonuclease H

1.4e-62

68.81

Show/hide

Query:  MDKGGAKRIEKESLEACLPEKRTTEGFDPKAYKLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVPITGKGKAKVA
        ++KG AK+IEK+ LEA LPE+RT +GFDPKAYKLMAKAGYDFTT TE KS KIFDER  LSPTQ+KLQKQGY IPNSR G+GY SSEPV ITGKGK KVA
Subjt:  MDKGGAKRIEKESLEACLPEKRTTEGFDPKAYKLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVPITGKGKAKVA

Query:  DTCHITFEECNDSKEDNKNESQRSSVFDRITSSTTHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSTFKRLSVSVTRDQ
        +TCHIT EE  DS+E  K+ SQRSSVFDRI  S    SVFQR++    +D N+ S   STRLSAFQRLNT          TP TR S FKRLSVSVTRDQ
Subjt:  DTCHITFEECNDSKEDNKNESQRSSVFDRITSSTTHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSTFKRLSVSVTRDQ

Query:  KK
        KK
Subjt:  KK

A0A5D3D1E5 Ribonuclease H

6.4e-63

69.31

Show/hide

Query:  MDKGGAKRIEKESLEACLPEKRTTEGFDPKAYKLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVPITGKGKAKVA
        ++KG AK+IEK+ L+A LPE+RT EGFDPKAYKLMAKAGYDFTT TE KS KIFDER  LSPTQ+KLQKQGY IPNSR G+GY+SSEPV ITGKGKAKVA
Subjt:  MDKGGAKRIEKESLEACLPEKRTTEGFDPKAYKLMAKAGYDFTTGTEFKS-KIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVPITGKGKAKVA

Query:  DTCHITFEECNDSKEDNKNESQRSSVFDRITSSTTHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSTFKRLSVSVTRDQ
        +TCHIT EE  DS+E  K  SQRSSVFDRI  S    SVFQR++    +D N+ S   STRLSAFQRLNT          TP TR S FKRLSVSVTRDQ
Subjt:  DTCHITFEECNDSKEDNKNESQRSSVFDRITSSTTHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNT----------TPATRTSTFKRLSVSVTRDQ

Query:  KK
        KK
Subjt:  KK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGATAAAGGAGGGGCGAAAAGGATTGAGAAAGAGAGCCTAGAAGCATGCCTTCCAGAAAAACGAACGACGGAAGGATTCGATCCAAAAGCATATAAGTTGATGGCAAA
GGCTGGTTATGACTTTACAACCGGTACCGAGTTCAAAAGCAAGATATTTGATGAAAGGCATGGGCTTTCTCCTACGCAAAGGAAGCTTCAAAAGCAAGGATATTTTATAC
CAAATTCAAGACCAGGAGTTGGGTATAAGTCTTCCGAGCCTGTTCCAATAACTGGTAAAGGAAAAGCAAAAGTTGCTGACACATGCCACATTACGTTTGAAGAATGCAAC
GATTCTAAAGAAGACAATAAAAACGAAAGTCAAAGAAGTTCTGTTTTTGATCGCATCACCTCCTCTACTACACACTCTTCAGTTTTCCAGAGATTGAATGTACCGACAAG
GGAGGACAAAAATGAAGGGTCAGCTTCTGAGTCCACCCGACTTTCTGCCTTTCAGAGACTAAATACAACTCCGGCTACGCGAACCTCTACCTTCAAAAGGTTAAGTGTGT
CGGTGACAAGAGACCAGAAGAAACCTCTCATAGTTTTCAAGTAA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MDKGGAKRIEKESLEACLPEKRTTEGFDPKAYKLMAKAGYDFTTGTEFKSKIFDERHGLSPTQRKLQKQGYFIPNSRPGVGYKSSEPVPITGKGKAKVADTCHITFEECN
DSKEDNKNESQRSSVFDRITSSTTHSSVFQRLNVPTREDKNEGSASESTRLSAFQRLNTTPATRTSTFKRLSVSVTRDQKKPLIVFK

PI0004517 (gene) of Melon (PI 482460) v1 genome