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PI0004520 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004520
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr01:18023982..18024671
RNA-Seq ExpressionPI0004520
SyntenyPI0004520
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0038192.1 hypothetical protein E6C27_scaffold270G00250 [Cucumis melo var. makuwa]4.3e-2255.24Show/hide
Query:  STYNQIKTTLDTMASNNEEWDEDDFGNRRGGRAK-DDGMDKNVVVALHGQMTAMNKLLKSMAISQVNAAGNSMVAANQIDEMRCVGCRGPHNTDACPLNT
        S+YNQI  TLD++A NNEEWD+D F + RGGR K ++G+D+NV+V   GQMTAMN LL+ M   QVNAA +S  +  Q+DE+ C+    PH  DACPLN 
Subjt:  STYNQIKTTLDTMASNNEEWDEDDFGNRRGGRAK-DDGMDKNVVVALHGQMTAMNKLLKSMAISQVNAAGNSMVAANQIDEMRCVGCRGPHNTDACPLNT

Query:  ETVAF
        E VA+
Subjt:  ETVAF

KAA0040852.1 hypothetical protein E6C27_scaffold333G00770 [Cucumis melo var. makuwa]5.8e-2745.16Show/hide
Query:  MLKSTYNQIKTTLDTMASNNEEWDEDDFGNRRGGRAKDD-GMDKNVVVALHGQMTAMNKLLKSMAISQVNAAGNSMVAANQIDEMRCVGCRGPHNTDACP
        ML+S+Y QIKTTLD + +N++E  +DD   +   R + D GMD+NV+VAL GQ+T M KLL+SMA+SQV+A GN + A  Q+DEMR VGC  PH TDAC 
Subjt:  MLKSTYNQIKTTLDTMASNNEEWDEDDFGNRRGGRAKDD-GMDKNVVVALHGQMTAMNKLLKSMAISQVNAAGNSMVAANQIDEMRCVGCRGPHNTDACP

Query:  LNTETVAF---------------------------------------KTTITTSSTSSMENLLREYMQKNDALLQSQASSIRNLEV
        LN E  A+                                        TT T SS SSM  LLR+YMQ+ DA +QSQ +SI NLE+
Subjt:  LNTETVAF---------------------------------------KTTITTSSTSSMENLLREYMQKNDALLQSQASSIRNLEV

KAA0048713.1 hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa]2.3e-3147.73Show/hide
Query:  MEVFYFGLNKATQQTADAVFVDGMLKSTYNQIKTTLDTMASNNEEWDEDDFGNR------RGGRAK-DDGMDKNVVVALHGQMTAMNKLLKSMAISQVNA
        ME FYFGL+K T Q+A+ VF  GML+S+YNQIK  LDTMASN++EW ++ FG+R      +G R + +DG+D +++VAL GQ+  MN +L+SMA+ QVN 
Subjt:  MEVFYFGLNKATQQTADAVFVDGMLKSTYNQIKTTLDTMASNNEEWDEDDFGNR------RGGRAK-DDGMDKNVVVALHGQMTAMNKLLKSMAISQVNA

Query:  AGNSMVAANQIDEMRCVGCRGPHNTDACPLNTETVAFKTTITTSSTSSMENLLREYMQKNDALLQSQASSIRNLEV
          +S+    Q++EM CVGCR PHNT+ACPLNTE VA+     T         +          + SQASSI+N+E+
Subjt:  AGNSMVAANQIDEMRCVGCRGPHNTDACPLNTETVAFKTTITTSSTSSMENLLREYMQKNDALLQSQASSIRNLEV

KGN44484.1 hypothetical protein Csa_015918 [Cucumis sativus]3.5e-2458.49Show/hide
Query:  MEVFYFGLNKATQQTADAVFVDGMLKSTYNQIKTTLDTMASNNEEWDEDDFGNRRGGRAKDDGMDKNVVVALHGQMTAMNKLLKSMAISQVNAAGNSMVA
        MEVFYFGL+K T Q  + +FV GML+S+YNQIK TLD+M++N++EWD+  FG+R  GR K +G+DK+VVV L GQM AMN LL+SM +SQVNAA N + A
Subjt:  MEVFYFGLNKATQQTADAVFVDGMLKSTYNQIKTTLDTMASNNEEWDEDDFGNRRGGRAKDDGMDKNVVVALHGQMTAMNKLLKSMAISQVNAAGNSMVA

Query:  ANQIDE
          Q+++
Subjt:  ANQIDE

KGN53801.1 hypothetical protein Csa_014772 [Cucumis sativus]1.4e-1747.75Show/hide
Query:  MEVFYFGLNKATQQTADAVFVDGMLKSTYNQIKTTLDTMASNNEEWDEDDF-------GNRRGGRAKDDGMDKNVVVALHGQMTAMNKLLKSMAISQVNA
        +E FYFGL++ TQQ  DAVF+ GML+ + N IKTTLD M SN++EW +++F       GNRR     + G + N ++ L  Q+T MNKLL+SMA+SQ+NA
Subjt:  MEVFYFGLNKATQQTADAVFVDGMLKSTYNQIKTTLDTMASNNEEWDEDDF-------GNRRGGRAKDDGMDKNVVVALHGQMTAMNKLLKSMAISQVNA

Query:  AGNSMVAANQI
         G+S+   +Q+
Subjt:  AGNSMVAANQI

TrEMBL top hitse value%identityAlignment
A0A0A0K6F9 Uncharacterized protein1.7e-2458.49Show/hide
Query:  MEVFYFGLNKATQQTADAVFVDGMLKSTYNQIKTTLDTMASNNEEWDEDDFGNRRGGRAKDDGMDKNVVVALHGQMTAMNKLLKSMAISQVNAAGNSMVA
        MEVFYFGL+K T Q  + +FV GML+S+YNQIK TLD+M++N++EWD+  FG+R  GR K +G+DK+VVV L GQM AMN LL+SM +SQVNAA N + A
Subjt:  MEVFYFGLNKATQQTADAVFVDGMLKSTYNQIKTTLDTMASNNEEWDEDDFGNRRGGRAKDDGMDKNVVVALHGQMTAMNKLLKSMAISQVNAAGNSMVA

Query:  ANQIDE
          Q+++
Subjt:  ANQIDE

A0A0A0L0Y4 Uncharacterized protein7.0e-1847.75Show/hide
Query:  MEVFYFGLNKATQQTADAVFVDGMLKSTYNQIKTTLDTMASNNEEWDEDDF-------GNRRGGRAKDDGMDKNVVVALHGQMTAMNKLLKSMAISQVNA
        +E FYFGL++ TQQ  DAVF+ GML+ + N IKTTLD M SN++EW +++F       GNRR     + G + N ++ L  Q+T MNKLL+SMA+SQ+NA
Subjt:  MEVFYFGLNKATQQTADAVFVDGMLKSTYNQIKTTLDTMASNNEEWDEDDF-------GNRRGGRAKDDGMDKNVVVALHGQMTAMNKLLKSMAISQVNA

Query:  AGNSMVAANQI
         G+S+   +Q+
Subjt:  AGNSMVAANQI

A0A5D3CC26 Uncharacterized protein1.1e-3147.73Show/hide
Query:  MEVFYFGLNKATQQTADAVFVDGMLKSTYNQIKTTLDTMASNNEEWDEDDFGNR------RGGRAK-DDGMDKNVVVALHGQMTAMNKLLKSMAISQVNA
        ME FYFGL+K T Q+A+ VF  GML+S+YNQIK  LDTMASN++EW ++ FG+R      +G R + +DG+D +++VAL GQ+  MN +L+SMA+ QVN 
Subjt:  MEVFYFGLNKATQQTADAVFVDGMLKSTYNQIKTTLDTMASNNEEWDEDDFGNR------RGGRAK-DDGMDKNVVVALHGQMTAMNKLLKSMAISQVNA

Query:  AGNSMVAANQIDEMRCVGCRGPHNTDACPLNTETVAFKTTITTSSTSSMENLLREYMQKNDALLQSQASSIRNLEV
          +S+    Q++EM CVGCR PHNT+ACPLNTE VA+     T         +          + SQASSI+N+E+
Subjt:  AGNSMVAANQIDEMRCVGCRGPHNTDACPLNTETVAFKTTITTSSTSSMENLLREYMQKNDALLQSQASSIRNLEV

A0A5D3CSC7 Uncharacterized protein2.1e-2255.24Show/hide
Query:  STYNQIKTTLDTMASNNEEWDEDDFGNRRGGRAK-DDGMDKNVVVALHGQMTAMNKLLKSMAISQVNAAGNSMVAANQIDEMRCVGCRGPHNTDACPLNT
        S+YNQI  TLD++A NNEEWD+D F + RGGR K ++G+D+NV+V   GQMTAMN LL+ M   QVNAA +S  +  Q+DE+ C+    PH  DACPLN 
Subjt:  STYNQIKTTLDTMASNNEEWDEDDFGNRRGGRAK-DDGMDKNVVVALHGQMTAMNKLLKSMAISQVNAAGNSMVAANQIDEMRCVGCRGPHNTDACPLNT

Query:  ETVAF
        E VA+
Subjt:  ETVAF

A0A5D3D2S0 Uncharacterized protein2.8e-2745.16Show/hide
Query:  MLKSTYNQIKTTLDTMASNNEEWDEDDFGNRRGGRAKDD-GMDKNVVVALHGQMTAMNKLLKSMAISQVNAAGNSMVAANQIDEMRCVGCRGPHNTDACP
        ML+S+Y QIKTTLD + +N++E  +DD   +   R + D GMD+NV+VAL GQ+T M KLL+SMA+SQV+A GN + A  Q+DEMR VGC  PH TDAC 
Subjt:  MLKSTYNQIKTTLDTMASNNEEWDEDDFGNRRGGRAKDD-GMDKNVVVALHGQMTAMNKLLKSMAISQVNAAGNSMVAANQIDEMRCVGCRGPHNTDACP

Query:  LNTETVAF---------------------------------------KTTITTSSTSSMENLLREYMQKNDALLQSQASSIRNLEV
        LN E  A+                                        TT T SS SSM  LLR+YMQ+ DA +QSQ +SI NLE+
Subjt:  LNTETVAF---------------------------------------KTTITTSSTSSMENLLREYMQKNDALLQSQASSIRNLEV

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGGTGTTCTATTTTGGACTGAATAAGGCAACACAGCAGACTGCTGATGCTGTGTTTGTAGACGGTATGTTGAAAAGTACATACAACCAGATTAAGACGACGCTGGA
TACGATGGCCAGCAACAACGAAGAATGGGATGAAGATGATTTCGGCAATCGCCGAGGAGGACGAGCAAAAGATGATGGTATGGATAAAAACGTCGTGGTGGCACTGCATG
GACAAATGACTGCGATGAACAAATTGCTTAAATCAATGGCAATATCGCAAGTTAACGCCGCAGGAAACTCTATGGTTGCGGCTAACCAAATTGATGAAATGAGATGTGTG
GGATGCAGGGGTCCCCATAACACTGACGCATGCCCACTCAACACGGAGACCGTCGCATTCAAAACCACCATCACCACCTCGTCCACCTCTTCCATGGAAAACCTCCTCCG
CGAATACATGCAGAAAAATGATGCTCTTCTGCAAAGCCAGGCTTCATCAATTCGTAATCTGGAGGTATAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGGTGTTCTATTTTGGACTGAATAAGGCAACACAGCAGACTGCTGATGCTGTGTTTGTAGACGGTATGTTGAAAAGTACATACAACCAGATTAAGACGACGCTGGA
TACGATGGCCAGCAACAACGAAGAATGGGATGAAGATGATTTCGGCAATCGCCGAGGAGGACGAGCAAAAGATGATGGTATGGATAAAAACGTCGTGGTGGCACTGCATG
GACAAATGACTGCGATGAACAAATTGCTTAAATCAATGGCAATATCGCAAGTTAACGCCGCAGGAAACTCTATGGTTGCGGCTAACCAAATTGATGAAATGAGATGTGTG
GGATGCAGGGGTCCCCATAACACTGACGCATGCCCACTCAACACGGAGACCGTCGCATTCAAAACCACCATCACCACCTCGTCCACCTCTTCCATGGAAAACCTCCTCCG
CGAATACATGCAGAAAAATGATGCTCTTCTGCAAAGCCAGGCTTCATCAATTCGTAATCTGGAGGTATAG
Protein sequenceShow/hide protein sequence
MEVFYFGLNKATQQTADAVFVDGMLKSTYNQIKTTLDTMASNNEEWDEDDFGNRRGGRAKDDGMDKNVVVALHGQMTAMNKLLKSMAISQVNAAGNSMVAANQIDEMRCV
GCRGPHNTDACPLNTETVAFKTTITTSSTSSMENLLREYMQKNDALLQSQASSIRNLEV