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PI0004541 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004541
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrovirus-related Pol polyprotein from transposon TNT 1-94
Genome locationchr01:11597563..11598204
RNA-Seq ExpressionPI0004541
SyntenyPI0004541
Gene Ontology termsGO:0005488 - binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0065687.1 retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis melo var. makuwa]5.2e-2874.73Show/hide
Query:  MDSNKSLTKNLVEFKKLSTNFKDMGDKIGDENESFILLNSLPEAYKEVKMTIKYGRQKITIDDVISAIKTRELEQNSQRRDQANGEEAYKE
        MD NKSL +NL EFKKLS++FK++GDKIGDENESFILLNSLPEAYKEVKM ++YGRQKIT   VISAI+TREL+ NSQRRDQ+NGE  + +
Subjt:  MDSNKSLTKNLVEFKKLSTNFKDMGDKIGDENESFILLNSLPEAYKEVKMTIKYGRQKITIDDVISAIKTRELEQNSQRRDQANGEEAYKE

TXG56858.1 hypothetical protein EZV62_018171 [Acer yangbiense]2.9e-1837.01Show/hide
Query:  MDSNKSLTKNLVEFKKLSTNFKDMG--DKIGDENESFILLNSLPEAYKEVKMTIKYGRQKITIDDVISAIKTRELEQNSQRRDQANG-------------
        MD +K L +NL EFKK++    D G  +K+ D+NE+ ILLNSLPE++K+VK  IKYGR  +++++ IS +K++EL+   +R+D                 
Subjt:  MDSNKSLTKNLVEFKKLSTNFKDMG--DKIGDENESFILLNSLPEAYKEVKMTIKYGRQKITIDDVISAIKTRELEQNSQRRDQANG-------------

Query:  --------------EEAYKEVKMTIKYGRQKITIDDVISAIKTRELEQNSQRRD
                       E++K+VK  IKYGR  +++++ ISA+K++ELE   +R+D
Subjt:  --------------EEAYKEVKMTIKYGRQKITIDDVISAIKTRELEQNSQRRD

XP_022152111.1 uncharacterized protein LOC111019900 [Momordica charantia]4.9e-1864.86Show/hide
Query:  MDSNKSLTKNLVEFKKLSTNFKDMGDKIGDENESFILLNSLPEAYKEVKMTIKYGRQKITIDDVISAIKTRELE
        MDS+K+L+ NL +FKKLS+ F  +G+KIG ENE+FILLNSLPE+Y+EVK+ +KYGR+ IT D +ISA+KT+ELE
Subjt:  MDSNKSLTKNLVEFKKLSTNFKDMGDKIGDENESFILLNSLPEAYKEVKMTIKYGRQKITIDDVISAIKTRELE

XP_038880322.1 uncharacterized protein LOC120071961 [Benincasa hispida]2.2e-1854.64Show/hide
Query:  MDSNKSLTKNLVEFKKLSTNFKDMGDKIGDENESFILLNSLPEAYKEVKMTIKYGRQKITIDDVISAIKTRELEQNSQRRDQANGE-----EAYKEV
        MDS K L+ NL EFK++   FK + +KIGDENE+F+LLNSLPE YKEVK  +KYGR+ +TID +ISA++TRELE  S +++Q   E       YK+V
Subjt:  MDSNKSLTKNLVEFKKLSTNFKDMGDKIGDENESFILLNSLPEAYKEVKMTIKYGRQKITIDDVISAIKTRELEQNSQRRDQANGE-----EAYKEV

XP_038885928.1 uncharacterized protein LOC120076236 [Benincasa hispida]1.9e-1756.98Show/hide
Query:  MDSNKSLTKNLVEFKKLSTNFKDMGDKIGDENESFILLNSLPEAYKEVKMTIKYGRQKITIDDVISAIKTRELEQNSQRRDQANGE
        MD  KSLT NL EFK LS++F+ +GD IG+ENE+FILLNSLPE +K+VK  +KYGR++IT   +ISA+  +ELE    ++DQ  GE
Subjt:  MDSNKSLTKNLVEFKKLSTNFKDMGDKIGDENESFILLNSLPEAYKEVKMTIKYGRQKITIDDVISAIKTRELEQNSQRRDQANGE

TrEMBL top hitse value%identityAlignment
A0A2P5FC12 Uncharacterized protein (Fragment)2.4e-1534.73Show/hide
Query:  MDSNKSLTKNLVEFKKLSTNFKDMG-DKIGDENESFILLNSLPEAYKEVKMTIKYGRQKITIDDVISAIKTRELEQNSQRRDQANGEEAYKEVKMTIKYG
        MD+NK+L +NL +FKK++     +  +KIGDE+++ ILLNSLP++Y+EVK  IK+GR+ IT+D+V +A+++ ELE  S+ +   NGE             
Subjt:  MDSNKSLTKNLVEFKKLSTNFKDMG-DKIGDENESFILLNSLPEAYKEVKMTIKYGRQKITIDDVISAIKTRELEQNSQRRDQANGEEAYKEVKMTIKYG

Query:  RQKITIDDVISAIKTRELEQNSQRRDQANGEGLFSKGKNKNNFKKTKNHKNKSKFECIFCHKRGHLR
                    ++ R  ++NS+ R +       S+ K+KN  K          F+C  CH+ GH+R
Subjt:  RQKITIDDVISAIKTRELEQNSQRRDQANGEGLFSKGKNKNNFKKTKNHKNKSKFECIFCHKRGHLR

A0A5C7H9Q4 Uncharacterized protein9.3e-1546.81Show/hide
Query:  MDSNKSLTKNLVEFKKLSTNFKDMG--DKIGDENESFILLNSLPEAYKEVKMTIKYGRQKITIDDVISAIKTRELEQNSQRRDQANGEEAYKEV
        MD++K L +NL +FKK++    + G  +K+ DENE+FILLNSLP+++K+VK  IKYGR  +++D+ ISA+K+++LE   ++ D A   +AYKE+
Subjt:  MDSNKSLTKNLVEFKKLSTNFKDMG--DKIGDENESFILLNSLPEAYKEVKMTIKYGRQKITIDDVISAIKTRELEQNSQRRDQANGEEAYKEV

A0A5C7HJ10 Uncharacterized protein1.4e-1837.01Show/hide
Query:  MDSNKSLTKNLVEFKKLSTNFKDMG--DKIGDENESFILLNSLPEAYKEVKMTIKYGRQKITIDDVISAIKTRELEQNSQRRDQANG-------------
        MD +K L +NL EFKK++    D G  +K+ D+NE+ ILLNSLPE++K+VK  IKYGR  +++++ IS +K++EL+   +R+D                 
Subjt:  MDSNKSLTKNLVEFKKLSTNFKDMG--DKIGDENESFILLNSLPEAYKEVKMTIKYGRQKITIDDVISAIKTRELEQNSQRRDQANG-------------

Query:  --------------EEAYKEVKMTIKYGRQKITIDDVISAIKTRELEQNSQRRD
                       E++K+VK  IKYGR  +++++ ISA+K++ELE   +R+D
Subjt:  --------------EEAYKEVKMTIKYGRQKITIDDVISAIKTRELEQNSQRRD

A0A5D3CAI4 Retrovirus-related Pol polyprotein from transposon TNT 1-942.5e-2874.73Show/hide
Query:  MDSNKSLTKNLVEFKKLSTNFKDMGDKIGDENESFILLNSLPEAYKEVKMTIKYGRQKITIDDVISAIKTRELEQNSQRRDQANGEEAYKE
        MD NKSL +NL EFKKLS++FK++GDKIGDENESFILLNSLPEAYKEVKM ++YGRQKIT   VISAI+TREL+ NSQRRDQ+NGE  + +
Subjt:  MDSNKSLTKNLVEFKKLSTNFKDMGDKIGDENESFILLNSLPEAYKEVKMTIKYGRQKITIDDVISAIKTRELEQNSQRRDQANGEEAYKE

A0A6J1DGM8 uncharacterized protein LOC1110199002.4e-1864.86Show/hide
Query:  MDSNKSLTKNLVEFKKLSTNFKDMGDKIGDENESFILLNSLPEAYKEVKMTIKYGRQKITIDDVISAIKTRELE
        MDS+K+L+ NL +FKKLS+ F  +G+KIG ENE+FILLNSLPE+Y+EVK+ +KYGR+ IT D +ISA+KT+ELE
Subjt:  MDSNKSLTKNLVEFKKLSTNFKDMGDKIGDENESFILLNSLPEAYKEVKMTIKYGRQKITIDDVISAIKTRELE

SwissProt top hitse value%identityAlignment
P10978 Retrovirus-related Pol polyprotein from transposon TNT 1-945.4e-0432.14Show/hide
Query:  MDSNKSLTKNLVEFKKLSTNFKDMGDKIGDENESFILLNSLPEAYKEVKMTIKYGRQKITIDDVISAIKTRE-LEQNSQRRDQA
        M    +   +L  F  L T   ++G KI +E+++ +LLNSLP +Y  +  TI +G+  I + DV SA+   E + +  + + QA
Subjt:  MDSNKSLTKNLVEFKKLSTNFKDMGDKIGDENESFILLNSLPEAYKEVKMTIKYGRQKITIDDVISAIKTRE-LEQNSQRRDQA

Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAGCAACAAGTCATTGACAAAGAATCTTGTAGAATTCAAAAAGCTGTCAACAAATTTCAAGGACATGGGAGACAAGATTGGTGATGAAAATGAATCATTCATTTT
GCTAAACTCACTTCCAGAAGCATATAAAGAAGTCAAAATGACTATCAAATATGGAAGGCAAAAGATCACCATCGATGATGTCATTTCAGCCATAAAAACCAGAGAACTAG
AACAAAATTCACAAAGAAGAGATCAAGCTAATGGTGAAGAAGCATATAAAGAAGTCAAAATGACTATCAAATATGGAAGGCAAAAGATCACCATCGATGATGTCATTTCA
GCCATAAAAACCAGAGAACTAGAACAAAATTCACAAAGAAGAGATCAAGCTAATGGTGAAGGTTTGTTCTCAAAGGGTAAGAACAAAAATAACTTTAAAAAAACCAAGAA
CCATAAGAATAAATCAAAATTTGAATGCATCTTTTGCCACAAAAGAGGACATCTTAGATAA
mRNA sequenceShow/hide mRNA sequence
ATGGACAGCAACAAGTCATTGACAAAGAATCTTGTAGAATTCAAAAAGCTGTCAACAAATTTCAAGGACATGGGAGACAAGATTGGTGATGAAAATGAATCATTCATTTT
GCTAAACTCACTTCCAGAAGCATATAAAGAAGTCAAAATGACTATCAAATATGGAAGGCAAAAGATCACCATCGATGATGTCATTTCAGCCATAAAAACCAGAGAACTAG
AACAAAATTCACAAAGAAGAGATCAAGCTAATGGTGAAGAAGCATATAAAGAAGTCAAAATGACTATCAAATATGGAAGGCAAAAGATCACCATCGATGATGTCATTTCA
GCCATAAAAACCAGAGAACTAGAACAAAATTCACAAAGAAGAGATCAAGCTAATGGTGAAGGTTTGTTCTCAAAGGGTAAGAACAAAAATAACTTTAAAAAAACCAAGAA
CCATAAGAATAAATCAAAATTTGAATGCATCTTTTGCCACAAAAGAGGACATCTTAGATAA
Protein sequenceShow/hide protein sequence
MDSNKSLTKNLVEFKKLSTNFKDMGDKIGDENESFILLNSLPEAYKEVKMTIKYGRQKITIDDVISAIKTRELEQNSQRRDQANGEEAYKEVKMTIKYGRQKITIDDVIS
AIKTRELEQNSQRRDQANGEGLFSKGKNKNNFKKTKNHKNKSKFECIFCHKRGHLR