CuGenDBv2

Gene ID	PI0004612
Organism	Cucumis metuliferus PI 482460 (Melon (PI 482460) v1)
Description	Gag/pol protein
Genome location	chr07:12356543..12357031
RNA-Seq Expression	PI0004612
Synteny	PI0004612
Gene Ontology terms	GO:0006508 - proteolysis (biological process) GO:0015074 - DNA integration (biological process) GO:0003676 - nucleic acid binding (molecular function) GO:0008234 - cysteine-type peptidase activity (molecular function) GO:0008270 - zinc ion binding (molecular function)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAA0044955.1 gag/pol protein [Cucumis melo var. makuwa]

1.9e-46

70.47

Show/hide

Query:  MDFLQKMFGQPSIQIRHESIKYVYNARMKEDQSIKEHVLDMMIQLNMVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEFQTFQS
        MD LQ+MFGQ S QI+H+++KY+YNARM E  S++EHVL+MM+  N+ E NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNE QTF+S
Subjt:  MDFLQKMFGQPSIQIRHESIKYVYNARMKEDQSIKEHVLDMMIQLNMVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEFQTFQS

Query:  LIKNKGQKEGEANVA-HFKRFQKGSSSGTKSAPSSFGTKKIQKKKGGRG
        L+K KGQK GEANVA   ++F +GS+SGTKS PSS G KK +KKKGG+G
Subjt:  LIKNKGQKEGEANVA-HFKRFQKGSSSGTKSAPSSFGTKKIQKKKGGRG

KAA0048404.1 gag/pol protein [Cucumis melo var. makuwa]

1.9e-46

70.47

Show/hide

Query:  MDFLQKMFGQPSIQIRHESIKYVYNARMKEDQSIKEHVLDMMIQLNMVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEFQTFQS
        MD LQ+MFGQ S QI+H+++KY+YNARM E  S++EHVL+MM+  N+ E NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNE QTF+S
Subjt:  MDFLQKMFGQPSIQIRHESIKYVYNARMKEDQSIKEHVLDMMIQLNMVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEFQTFQS

Query:  LIKNKGQKEGEANVA-HFKRFQKGSSSGTKSAPSSFGTKKIQKKKGGRG
        L+K KGQK GEANVA   ++F +GS+SGTKS PSS G KK +KKKGG+G
Subjt:  LIKNKGQKEGEANVA-HFKRFQKGSSSGTKSAPSSFGTKKIQKKKGGRG

KAA0054490.1 gag/pol protein [Cucumis melo var. makuwa]

1.9e-46

70.47

Show/hide

Query:  MDFLQKMFGQPSIQIRHESIKYVYNARMKEDQSIKEHVLDMMIQLNMVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEFQTFQS
        MD LQ+MFGQ S QI+H+++KY+YNARM E  S++EHVL+MM+  N+ E NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNE QTF+S
Subjt:  MDFLQKMFGQPSIQIRHESIKYVYNARMKEDQSIKEHVLDMMIQLNMVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEFQTFQS

Query:  LIKNKGQKEGEANVA-HFKRFQKGSSSGTKSAPSSFGTKKIQKKKGGRG
        L+K KGQK GEANVA   ++F +GS+SGTKS PSS G KK +KKKGG+G
Subjt:  LIKNKGQKEGEANVA-HFKRFQKGSSSGTKSAPSSFGTKKIQKKKGGRG

KAA0058447.1 gag/pol protein [Cucumis melo var. makuwa]

1.4e-46

70.47

Show/hide

Query:  MDFLQKMFGQPSIQIRHESIKYVYNARMKEDQSIKEHVLDMMIQLNMVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEFQTFQS
        MD LQ+MFGQ S QI+H+++KY+YN RM E  S++EHVL+MM+  N+VE NGAVIDE SQVSFILESLP+SFLQFRSN VMNKI YT+TTLLNE QTF+S
Subjt:  MDFLQKMFGQPSIQIRHESIKYVYNARMKEDQSIKEHVLDMMIQLNMVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEFQTFQS

Query:  LIKNKGQKEGEANVA-HFKRFQKGSSSGTKSAPSSFGTKKIQKKKGGRG
        L+K KGQK GEANVA   ++F KGS+SGTKS PSS G KK++KKKGG+G
Subjt:  LIKNKGQKEGEANVA-HFKRFQKGSSSGTKSAPSSFGTKKIQKKKGGRG

TYK14550.1 gag/pol protein [Cucumis melo var. makuwa]

1.9e-46

70.47

Show/hide

Query:  MDFLQKMFGQPSIQIRHESIKYVYNARMKEDQSIKEHVLDMMIQLNMVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEFQTFQS
        MD LQ+MFGQ S QI+H+++KY+YNARM E  S++EHVL+MM+  N+ E NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNE QTF+S
Subjt:  MDFLQKMFGQPSIQIRHESIKYVYNARMKEDQSIKEHVLDMMIQLNMVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEFQTFQS

Query:  LIKNKGQKEGEANVA-HFKRFQKGSSSGTKSAPSSFGTKKIQKKKGGRG
        L+K KGQK GEANVA   ++F +GS+SGTKS PSS G KK +KKKGG+G
Subjt:  LIKNKGQKEGEANVA-HFKRFQKGSSSGTKSAPSSFGTKKIQKKKGGRG

TrEMBL top hits

e value

%identity

Alignment

A0A5A7SMH8 Gag/pol protein

9.0e-47

70.47

Show/hide

Query:  MDFLQKMFGQPSIQIRHESIKYVYNARMKEDQSIKEHVLDMMIQLNMVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEFQTFQS
        MD LQ+MFGQ S QI+H+++KY+YNARM E  S++EHVL+MM+  N+ E NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNE QTF+S
Subjt:  MDFLQKMFGQPSIQIRHESIKYVYNARMKEDQSIKEHVLDMMIQLNMVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEFQTFQS

Query:  LIKNKGQKEGEANVA-HFKRFQKGSSSGTKSAPSSFGTKKIQKKKGGRG
        L+K KGQK GEANVA   ++F +GS+SGTKS PSS G KK +KKKGG+G
Subjt:  LIKNKGQKEGEANVA-HFKRFQKGSSSGTKSAPSSFGTKKIQKKKGGRG

A0A5A7TU93 Gag/pol protein

9.0e-47

70.47

Show/hide

Query:  MDFLQKMFGQPSIQIRHESIKYVYNARMKEDQSIKEHVLDMMIQLNMVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEFQTFQS
        MD LQ+MFGQ S QI+H+++KY+YNARM E  S++EHVL+MM+  N+ E NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNE QTF+S
Subjt:  MDFLQKMFGQPSIQIRHESIKYVYNARMKEDQSIKEHVLDMMIQLNMVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEFQTFQS

Query:  LIKNKGQKEGEANVA-HFKRFQKGSSSGTKSAPSSFGTKKIQKKKGGRG
        L+K KGQK GEANVA   ++F +GS+SGTKS PSS G KK +KKKGG+G
Subjt:  LIKNKGQKEGEANVA-HFKRFQKGSSSGTKSAPSSFGTKKIQKKKGGRG

A0A5A7UUN7 Gag/pol protein

6.9e-47

70.47

Show/hide

Query:  MDFLQKMFGQPSIQIRHESIKYVYNARMKEDQSIKEHVLDMMIQLNMVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEFQTFQS
        MD LQ+MFGQ S QI+H+++KY+YN RM E  S++EHVL+MM+  N+VE NGAVIDE SQVSFILESLP+SFLQFRSN VMNKI YT+TTLLNE QTF+S
Subjt:  MDFLQKMFGQPSIQIRHESIKYVYNARMKEDQSIKEHVLDMMIQLNMVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEFQTFQS

Query:  LIKNKGQKEGEANVA-HFKRFQKGSSSGTKSAPSSFGTKKIQKKKGGRG
        L+K KGQK GEANVA   ++F KGS+SGTKS PSS G KK++KKKGG+G
Subjt:  LIKNKGQKEGEANVA-HFKRFQKGSSSGTKSAPSSFGTKKIQKKKGGRG

A0A5A7V4M1 Gag/pol protein

9.0e-47

70.47

Show/hide

Query:  MDFLQKMFGQPSIQIRHESIKYVYNARMKEDQSIKEHVLDMMIQLNMVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEFQTFQS
        MD LQ+MFGQ S QI+H+++KY+YNARM E  S++EHVL+MM+  N+ E NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNE QTF+S
Subjt:  MDFLQKMFGQPSIQIRHESIKYVYNARMKEDQSIKEHVLDMMIQLNMVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEFQTFQS

Query:  LIKNKGQKEGEANVA-HFKRFQKGSSSGTKSAPSSFGTKKIQKKKGGRG
        L+K KGQK GEANVA   ++F +GS+SGTKS PSS G KK +KKKGG+G
Subjt:  LIKNKGQKEGEANVA-HFKRFQKGSSSGTKSAPSSFGTKKIQKKKGGRG

A0A5D3CPJ6 Gag/pol protein

9.0e-47

70.47

Show/hide

Query:  MDFLQKMFGQPSIQIRHESIKYVYNARMKEDQSIKEHVLDMMIQLNMVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEFQTFQS
        MD LQ+MFGQ S QI+H+++KY+YNARM E  S++EHVL+MM+  N+ E NGAVIDE SQVSFILESLP+SFLQFRSNAVMNKI YT+TTLLNE QTF+S
Subjt:  MDFLQKMFGQPSIQIRHESIKYVYNARMKEDQSIKEHVLDMMIQLNMVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEFQTFQS

Query:  LIKNKGQKEGEANVA-HFKRFQKGSSSGTKSAPSSFGTKKIQKKKGGRG
        L+K KGQK GEANVA   ++F +GS+SGTKS PSS G KK +KKKGG+G
Subjt:  LIKNKGQKEGEANVA-HFKRFQKGSSSGTKSAPSSFGTKKIQKKKGGRG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits	e value	%identity	Alignment
No hits found

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGACTTCCTCCAAAAGATGTTTGGACAACCGTCTATTCAAATCCGGCACGAGTCAATAAAATACGTTTATAATGCTCGTATGAAGGAGGACCAATCTATTAAAGAACA
TGTTCTTGACATGATGATCCAATTAAACATGGTAGAGACGAACGGGGCAGTCATTGACGAGCAAAGTCAGGTGTCCTTTATCTTGGAATCTCTTCCAAAGAGTTTCCTTC
AATTTCGCAGCAATGCAGTTATGAACAAGATAGAGTATACCATGACTACCCTCCTTAACGAGTTCCAAACTTTTCAGTCTCTTATAAAAAATAAAGGACAGAAAGAAGGA
GAGGCAAATGTTGCCCATTTCAAGAGGTTTCAGAAGGGTTCATCCTCTGGAACCAAGTCTGCACCTTCATCTTTTGGGACTAAGAAAATCCAGAAGAAGAAAGGAGGAAG
GGGAAAGATCCTGCTGTTGCTACTAAAGGCAAGGAGAAGGCTAAGGTAG

mRNA sequence

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Protein sequence

Show/hide protein sequence

MDFLQKMFGQPSIQIRHESIKYVYNARMKEDQSIKEHVLDMMIQLNMVETNGAVIDEQSQVSFILESLPKSFLQFRSNAVMNKIEYTMTTLLNEFQTFQSLIKNKGQKEG
EANVAHFKRFQKGSSSGTKSAPSSFGTKKIQKKKGGRGKILLLLLKARRRLR

PI0004612 (gene) of Melon (PI 482460) v1 genome