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PI0004642 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004642
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr11:9701346..9701549
RNA-Seq ExpressionPI0004642
SyntenyPI0004642
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0062747.1 retrotransposon protein [Cucumis melo var. makuwa]1.5e-2179.1Show/hide
Query:  MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFSDWELRNQ
        M CCLLHNLINREMTN+ + DDLDEGDST+ATT GD+I+YIE SNEWS+WRDQLA TMFSDWEL+ Q
Subjt:  MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFSDWELRNQ

KAA0063753.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]5.5e-2177.61Show/hide
Query:  MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFSDWELRNQ
        M CCLLHNLINREMTN+ + DDLDE DST+ATT GD+I+YIE SNEWS+WRDQLA TMFSDWEL +Q
Subjt:  MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFSDWELRNQ

KAA0067470.1 retrotransposon protein [Cucumis melo var. makuwa]3.2e-2177.61Show/hide
Query:  MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFSDWELRNQ
        + CCLLHNLINREMTN  + D++DE DSTHATT  DDI YIETSNEWSQWRD LA+ MFSDWELRNQ
Subjt:  MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFSDWELRNQ

TYJ99699.1 putative nuclease HARBI1 [Cucumis melo var. makuwa]3.2e-2177.61Show/hide
Query:  MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFSDWELRNQ
        + CCLLHNLINREMTN  + D++DE DSTHATT  DDI YIETSNEWSQWRD LA+ MFSDWELRNQ
Subjt:  MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFSDWELRNQ

XP_008441953.1 PREDICTED: uncharacterized protein LOC103485952 [Cucumis melo]5.5e-2179.1Show/hide
Query:  MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFSDWELRNQ
        M CCLLHNLI REMTNN + DDLDEGDST+ATT GD+I+YIE SNEWS+ RDQLA TMFSDWELR+Q
Subjt:  MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFSDWELRNQ

TrEMBL top hitse value%identityAlignment
A0A5A7TJS2 Retrotransposon protein2.7e-2179.1Show/hide
Query:  MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFSDWELRNQ
        M CCLLHNLINREMTN+ + DDLDEGDST+ATT GD+I+YIE SNEWS+ RDQLA TMFSDWELR+Q
Subjt:  MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFSDWELRNQ

A0A5A7V6M3 Putative nuclease HARBI12.7e-2177.61Show/hide
Query:  MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFSDWELRNQ
        M CCLLHNLINREMTN+ + DDLDE DST+ATT GD+I+YIE SNEWS+WRDQLA TMFSDWEL +Q
Subjt:  MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFSDWELRNQ

A0A5A7VJX3 Retrotransposon protein1.6e-2177.61Show/hide
Query:  MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFSDWELRNQ
        + CCLLHNLINREMTN  + D++DE DSTHATT  DDI YIETSNEWSQWRD LA+ MFSDWELRNQ
Subjt:  MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFSDWELRNQ

A0A5D3BL48 Putative nuclease HARBI11.6e-2177.61Show/hide
Query:  MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFSDWELRNQ
        + CCLLHNLINREMTN  + D++DE DSTHATT  DDI YIETSNEWSQWRD LA+ MFSDWELRNQ
Subjt:  MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFSDWELRNQ

A0A5D3DG22 Retrotransposon protein7.0e-2279.1Show/hide
Query:  MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFSDWELRNQ
        M CCLLHNLINREMTN+ + DDLDEGDST+ATT GD+I+YIE SNEWS+WRDQLA TMFSDWEL+ Q
Subjt:  MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFSDWELRNQ

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGTGTTGTCTTCTACATAATCTTATCAATAGAGAGATGACTAACAATGGTATGAACGACGATCTGGACGAGGGTGATTCAACTCACGCTACTACGGAAGGTGACGA
TATTAGTTACATTGAGACATCAAATGAATGGAGTCAATGGAGGGATCAATTGGCTAAGACGATGTTTAGTGATTGGGAGTTACGTAACCAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGACGTGTTGTCTTCTACATAATCTTATCAATAGAGAGATGACTAACAATGGTATGAACGACGATCTGGACGAGGGTGATTCAACTCACGCTACTACGGAAGGTGACGA
TATTAGTTACATTGAGACATCAAATGAATGGAGTCAATGGAGGGATCAATTGGCTAAGACGATGTTTAGTGATTGGGAGTTACGTAACCAGTAG
Protein sequenceShow/hide protein sequence
MTCCLLHNLINREMTNNGMNDDLDEGDSTHATTEGDDISYIETSNEWSQWRDQLAKTMFSDWELRNQ