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PI0004655 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004655
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr03:13717073..13717546
RNA-Seq ExpressionPI0004655
SyntenyPI0004655
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046468.1 hypothetical protein E6C27_scaffold543G00470 [Cucumis melo var. makuwa]1.1e-3055.12Show/hide
Query:  FQQKNRENLHDAWSRFKRMVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGGMLKSFYNQIKATLDTMASNNEEWDEDDFGNRR---GGRGRSDEG
        F+ ++RENL+DAWS  KR+VKAC H+GI +C+LME FYF L++  QQT D VFVGG+L++ YNQ K  LDTM SN++E  +D   +++     RGR+DEG
Subjt:  FQQKNRENLHDAWSRFKRMVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGGMLKSFYNQIKATLDTMASNNEEWDEDDFGNRR---GGRGRSDEG

Query:  MDKNVVVALQGQMTAMNNLLNLWQYRR
        MD+N +V LQGQ+T MN LL+ W YR+
Subjt:  MDKNVVVALQGQMTAMNNLLNLWQYRR

KAA0048713.1 hypothetical protein E6C27_scaffold43G00050 [Cucumis melo var. makuwa]6.0e-3457.48Show/hide
Query:  MSFQQKNRENLHDAWSRFKRMVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGGMLKSFYNQIKATLDTMASNNEEWDEDDFGNR------RGGRG
        M+F+Q++RENL D W RFKRM+K CPH+ IPEC+LME FYFGL+K T Q+A+ VF GGML+S YNQIK  LDTMASN++EW ++ FG+R      +G RG
Subjt:  MSFQQKNRENLHDAWSRFKRMVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGGMLKSFYNQIKATLDTMASNNEEWDEDDFGNR------RGGRG

Query:  RSDEGMDKNVVVALQGQMTAMNNLLNL
        R ++G+D +++VALQGQ+  MN L ++
Subjt:  RSDEGMDKNVVVALQGQMTAMNNLLNL

KAA0059690.1 Retrotransposon gag protein [Cucumis melo var. makuwa]2.3e-2564.13Show/hide
Query:  MSFQQKNRENLHDAWSRFKRMVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGGMLKSFYNQIKATLDTMASNNEEWDEDDFGNRRGG
        M F+Q+  ENLHDAWSRFKR++K C   GIPE +LMEVFYF L+K TQ T  AVF GGMLKSFYNQIK+ L++MA N++EWD+ DF +R  G
Subjt:  MSFQQKNRENLHDAWSRFKRMVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGGMLKSFYNQIKATLDTMASNNEEWDEDDFGNRRGG

KAA0061983.1 uncharacterized protein E6C27_scaffold89G002850 [Cucumis melo var. makuwa]1.2e-2164.1Show/hide
Query:  FQQKNRENLHDAWSRFKRMVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGGMLKSFYNQIKATLDTMASNNEE
        F+Q++R+NLHDAWS FKRMVKAC H+GI + +LME FYFGL+K T+Q+AD++F+GG+L+S YNQIKA LD+MA+N+++
Subjt:  FQQKNRENLHDAWSRFKRMVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGGMLKSFYNQIKATLDTMASNNEE

KGN44484.1 hypothetical protein Csa_015918 [Cucumis sativus]5.2e-3855.48Show/hide
Query:  MSFQQKNRENLHDAWSRFKRMVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGGMLKSFYNQIKATLDTMASNNEEWDEDDFGNRRGGRGRSDEGM
        M F+Q+++EN+HD WSRFKR+VKACP +GIPEC+ MEVFYFGL+K T Q  + +FVGGML+S YNQIKATLD+M++N++EWD+  FG+R   RGR+ EG+
Subjt:  MSFQQKNRENLHDAWSRFKRMVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGGMLKSFYNQIKATLDTMASNNEEWDEDDFGNRRGGRGRSDEGM

Query:  DKNVVVALQGQMTAMNNLL---NLWQYRRSMPLCTWQTKLMIWDVWDATVLIILS
        DK+VVV LQGQM AMNNLL    L Q   +        ++  + VWD  +L  L+
Subjt:  DKNVVVALQGQMTAMNNLL---NLWQYRRSMPLCTWQTKLMIWDVWDATVLIILS

TrEMBL top hitse value%identityAlignment
A0A0A0K6F9 Uncharacterized protein2.5e-3855.48Show/hide
Query:  MSFQQKNRENLHDAWSRFKRMVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGGMLKSFYNQIKATLDTMASNNEEWDEDDFGNRRGGRGRSDEGM
        M F+Q+++EN+HD WSRFKR+VKACP +GIPEC+ MEVFYFGL+K T Q  + +FVGGML+S YNQIKATLD+M++N++EWD+  FG+R   RGR+ EG+
Subjt:  MSFQQKNRENLHDAWSRFKRMVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGGMLKSFYNQIKATLDTMASNNEEWDEDDFGNRRGGRGRSDEGM

Query:  DKNVVVALQGQMTAMNNLL---NLWQYRRSMPLCTWQTKLMIWDVWDATVLIILS
        DK+VVV LQGQM AMNNLL    L Q   +        ++  + VWD  +L  L+
Subjt:  DKNVVVALQGQMTAMNNLL---NLWQYRRSMPLCTWQTKLMIWDVWDATVLIILS

A0A5A7TUE1 Uncharacterized protein5.1e-3155.12Show/hide
Query:  FQQKNRENLHDAWSRFKRMVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGGMLKSFYNQIKATLDTMASNNEEWDEDDFGNRR---GGRGRSDEG
        F+ ++RENL+DAWS  KR+VKAC H+GI +C+LME FYF L++  QQT D VFVGG+L++ YNQ K  LDTM SN++E  +D   +++     RGR+DEG
Subjt:  FQQKNRENLHDAWSRFKRMVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGGMLKSFYNQIKATLDTMASNNEEWDEDDFGNRR---GGRGRSDEG

Query:  MDKNVVVALQGQMTAMNNLLNLWQYRR
        MD+N +V LQGQ+T MN LL+ W YR+
Subjt:  MDKNVVVALQGQMTAMNNLLNLWQYRR

A0A5A7V1F3 Retrotrans_gag domain-containing protein5.7e-2264.1Show/hide
Query:  FQQKNRENLHDAWSRFKRMVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGGMLKSFYNQIKATLDTMASNNEE
        F+Q++R+NLHDAWS FKRMVKAC H+GI + +LME FYFGL+K T+Q+AD++F+GG+L+S YNQIKA LD+MA+N+++
Subjt:  FQQKNRENLHDAWSRFKRMVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGGMLKSFYNQIKATLDTMASNNEE

A0A5D3CC26 Uncharacterized protein2.9e-3457.48Show/hide
Query:  MSFQQKNRENLHDAWSRFKRMVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGGMLKSFYNQIKATLDTMASNNEEWDEDDFGNR------RGGRG
        M+F+Q++RENL D W RFKRM+K CPH+ IPEC+LME FYFGL+K T Q+A+ VF GGML+S YNQIK  LDTMASN++EW ++ FG+R      +G RG
Subjt:  MSFQQKNRENLHDAWSRFKRMVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGGMLKSFYNQIKATLDTMASNNEEWDEDDFGNR------RGGRG

Query:  RSDEGMDKNVVVALQGQMTAMNNLLNL
        R ++G+D +++VALQGQ+  MN L ++
Subjt:  RSDEGMDKNVVVALQGQMTAMNNLLNL

A0A5D3DR17 Retrotransposon gag protein1.1e-2564.13Show/hide
Query:  MSFQQKNRENLHDAWSRFKRMVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGGMLKSFYNQIKATLDTMASNNEEWDEDDFGNRRGG
        M F+Q+  ENLHDAWSRFKR++K C   GIPE +LMEVFYF L+K TQ T  AVF GGMLKSFYNQIK+ L++MA N++EWD+ DF +R  G
Subjt:  MSFQQKNRENLHDAWSRFKRMVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGGMLKSFYNQIKATLDTMASNNEEWDEDDFGNRRGG

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCTTCCAGCAGAAAAATAGAGAGAACCTACATGATGCGTGGAGTAGGTTCAAGAGGATGGTGAAAGCGTGCCCCCACAATGGCATTCCCGAGTGTATATTGATGGA
GGTCTTCTATTTTGGTTTGAACAAGGCTACACAGCAGACTGCTGATGCTGTGTTTGTAGGTGGTATGTTAAAAAGCTTCTACAACCAGATTAAAGCGACGCTGGACACAA
TGGCCAGTAATAACGAAGAATGGGATGAAGATGATTTCGGCAATCGTCGAGGAGGACGAGGAAGAAGCGATGAAGGTATGGATAAGAACGTCGTGGTGGCATTGCAGGGG
CAAATGACTGCGATGAACAATCTACTAAATCTATGGCAATATCGCAGGTCAATGCCTCTGTGCACGTGGCAAACAAAATTGATGATATGGGATGTGTGGGATGCGACGGT
TCTCATAATACTGAGCATGCCCACTCAACACTGA
mRNA sequenceShow/hide mRNA sequence
ATGAGCTTCCAGCAGAAAAATAGAGAGAACCTACATGATGCGTGGAGTAGGTTCAAGAGGATGGTGAAAGCGTGCCCCCACAATGGCATTCCCGAGTGTATATTGATGGA
GGTCTTCTATTTTGGTTTGAACAAGGCTACACAGCAGACTGCTGATGCTGTGTTTGTAGGTGGTATGTTAAAAAGCTTCTACAACCAGATTAAAGCGACGCTGGACACAA
TGGCCAGTAATAACGAAGAATGGGATGAAGATGATTTCGGCAATCGTCGAGGAGGACGAGGAAGAAGCGATGAAGGTATGGATAAGAACGTCGTGGTGGCATTGCAGGGG
CAAATGACTGCGATGAACAATCTACTAAATCTATGGCAATATCGCAGGTCAATGCCTCTGTGCACGTGGCAAACAAAATTGATGATATGGGATGTGTGGGATGCGACGGT
TCTCATAATACTGAGCATGCCCACTCAACACTGA
Protein sequenceShow/hide protein sequence
MSFQQKNRENLHDAWSRFKRMVKACPHNGIPECILMEVFYFGLNKATQQTADAVFVGGMLKSFYNQIKATLDTMASNNEEWDEDDFGNRRGGRGRSDEGMDKNVVVALQG
QMTAMNNLLNLWQYRRSMPLCTWQTKLMIWDVWDATVLIILSMPTQH