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PI0004702 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004702
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotransposon protein
Genome locationchr07:17522275..17522502
RNA-Seq ExpressionPI0004702
SyntenyPI0004702
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0043083.1 uncharacterized protein E6C27_scaffold158G00210 [Cucumis melo var. makuwa]3.7e-1469.86Show/hide
Query:  VIQTQIHQEVVEDKIIR----------GGMAKDRLNVIIVINSANIPVNTEIKLKKMQIVLRKMKKSVIHHCF
        VIQTQIHQEV ED IIR          GGM KDRLNVIIVINSA +  N EI+LKKMQI+LRKMKK+VI HCF
Subjt:  VIQTQIHQEVVEDKIIR----------GGMAKDRLNVIIVINSANIPVNTEIKLKKMQIVLRKMKKSVIHHCF
KAA0058597.1 retrotransposon protein [Cucumis melo var. makuwa]1.7e-0660.34Show/hide
Query:  IHQEVVEDKIIRGGMAKDRLNVIIVINSANIPVNTEIKLKKMQIVLRKMKKSVIHHCF
        I  +V +D+I+ GGM KD LNVIIVIN A I  N EI+ KKMQ +L+ MKK+VI HCF
Subjt:  IHQEVVEDKIIRGGMAKDRLNVIIVINSANIPVNTEIKLKKMQIVLRKMKKSVIHHCF
TrEMBL top hitse value%identityAlignment
A0A5A7TIB1 Uncharacterized protein1.8e-1469.86Show/hide
Query:  VIQTQIHQEVVEDKIIR----------GGMAKDRLNVIIVINSANIPVNTEIKLKKMQIVLRKMKKSVIHHCF
        VIQTQIHQEV ED IIR          GGM KDRLNVIIVINSA +  N EI+LKKMQI+LRKMKK+VI HCF
Subjt:  VIQTQIHQEVVEDKIIR----------GGMAKDRLNVIIVINSANIPVNTEIKLKKMQIVLRKMKKSVIHHCF
A0A5A7UV40 Retrotransposon protein8.1e-0760.34Show/hide
Query:  IHQEVVEDKIIRGGMAKDRLNVIIVINSANIPVNTEIKLKKMQIVLRKMKKSVIHHCF
        I  +V +D+I+ GGM KD LNVIIVIN A I  N EI+ KKMQ +L+ MKK+VI HCF
Subjt:  IHQEVVEDKIIRGGMAKDRLNVIIVINSANIPVNTEIKLKKMQIVLRKMKKSVIHHCF
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTAATTCAAACTCAAATTCATCAAGAGGTCGTAGAAGACAAAATTATTCGAGGAGGTATGGCAAAAGACAGGTTGAATGTTATAATTGTCATAAATTCGGCCAA
TATTCCTGTGAATACAGAAATAAAGTTGAAGAAAATGCAAATTGTACTGAGAAAGATGAAGAAGTCGGTGATTCATCATTGCTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTAATTCAAACTCAAATTCATCAAGAGGTCGTAGAAGACAAAATTATTCGAGGAGGTATGGCAAAAGACAGGTTGAATGTTATAATTGTCATAAATTCGGCCAA
TATTCCTGTGAATACAGAAATAAAGTTGAAGAAAATGCAAATTGTACTGAGAAAGATGAAGAAGTCGGTGATTCATCATTGCTTCTAG
Protein sequenceShow/hide protein sequence
MGVIQTQIHQEVVEDKIIRGGMAKDRLNVIIVINSANIPVNTEIKLKKMQIVLRKMKKSVIHHCF