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PI0004724 (gene) of Melon (PI 482460) v1 genome

Gene IDPI0004724
OrganismCucumis metuliferus PI 482460 (Melon (PI 482460) v1)
DescriptionRetrotrans_gag domain-containing protein
Genome locationchr04:26410496..26411410
RNA-Seq ExpressionPI0004724
SyntenyPI0004724
Gene Ontology termsGO:0006259 - DNA metabolic process (biological process)
GO:0140640 - catalytic activity, acting on a nucleic acid (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0036947.1 uncharacterized protein E6C27_scaffold86G00270 [Cucumis melo var. makuwa]2.3e-10172.08Show/hide
Query:  MEMKSLESFKEYAQRWRDKVAKVQPPLRDKEMTFMFMNTLCAPFYDQMIGNATTNFFDIIVIGERIEYEINHGRIAEATTEYSGIKRGETSKKKEGE---
        ME KS ESFKEYAQRWRD  A+VQPPL DKEMT MF+NTL APFY++MIGNA+TNF DIIVIGERIEY I HGR+AEATTEY GIK+G  SKKKEGE   
Subjt:  MEMKSLESFKEYAQRWRDKVAKVQPPLRDKEMTFMFMNTLCAPFYDQMIGNATTNFFDIIVIGERIEYEINHGRIAEATTEYSGIKRGETSKKKEGE---

Query:  ----------------------GQGSKANSDTWRFDPILMTYTELLPQLIQIRELAHIPMIPIQPPYPKWYDSNAWCDYHAGGAGHSTENCLALKRKVQS
                              GQGSK N DTW+FDPI MTYTELLPQLIQ R++A IPMIPIQPPYPKWYDSNA CDYHAGG GHSTENCLALKR VQS
Subjt:  ----------------------GQGSKANSDTWRFDPILMTYTELLPQLIQIRELAHIPMIPIQPPYPKWYDSNAWCDYHAGGAGHSTENCLALKRKVQS

Query:  LTNVGWLSFKKASEKPNVNNNPLPNHENSKVNVVDFFDEECKKKVHEIMMPMETLFESFFEVGYV
        L N GWLSFKK+ +KPNVN NPLP+HEN KVNVVD   E+CK +VHEI+MPME LFES FE GYV
Subjt:  LTNVGWLSFKKASEKPNVNNNPLPNHENSKVNVVDFFDEECKKKVHEIMMPMETLFESFFEVGYV

KAA0060421.1 uncharacterized protein E6C27_scaffold22G002400 [Cucumis melo var. makuwa]3.1e-9863.49Show/hide
Query:  MEMKSLESFKEYAQRWRDKVAKVQPPLRDKEMTFMFMNTLCAPFYDQMIGNATTNFFDIIVIGERIEYEINHGRIAEATTEYSGIKRGETSKKKEGE---
        ME KS ESFKEYAQRW+D  A+VQPPL DKEMT MFMNTL APFY++MIGNA+TNF DIIVIGERIEY I HGR+AE TTEY GIK+G  SKKKEGE   
Subjt:  MEMKSLESFKEYAQRWRDKVAKVQPPLRDKEMTFMFMNTLCAPFYDQMIGNATTNFFDIIVIGERIEYEINHGRIAEATTEYSGIKRGETSKKKEGE---

Query:  ------------------------------------------------------------GQGSKANSDTWRFDPILMTYTELLPQLIQIRELAHIPMIP
                                                                    GQGSK NSDTWRFDPI MTYTELLPQLIQ R+LA IPMIP
Subjt:  ------------------------------------------------------------GQGSKANSDTWRFDPILMTYTELLPQLIQIRELAHIPMIP

Query:  IQPPYPKWYDSNAWCDYHAGGAGHSTENCLALKRKVQSLTNVGWLSFKKASEKPNVNNNPLPNHENSKVNVVDFFDEECKKKVHEIMMPMETLFESFFEV
        IQPPYPKWYDSNA CDYHAGG GHSTENC ALKR VQSL N GWLSFKK+ EKPNVN NPLPNHEN KVN VD   E+CK +VHEI+MPME LFE  FE 
Subjt:  IQPPYPKWYDSNAWCDYHAGGAGHSTENCLALKRKVQSLTNVGWLSFKKASEKPNVNNNPLPNHENSKVNVVDFFDEECKKKVHEIMMPMETLFESFFEV

Query:  GYVS
        GYVS
Subjt:  GYVS

TYK27810.1 uncharacterized protein E5676_scaffold749G00390 [Cucumis melo var. makuwa]2.0e-9775.93Show/hide
Query:  MEMKSLESFKEYAQRWRDKVAKVQPPLRDKEMTFMFMNTLCAPFYDQMIGNATTNFFDIIVIGERIEYEINHGRIAEATTEYSGIKRGETSKKKEGEGQG
        ME KS +SFKEYAQ WRD  A+VQP L DKEMT MFMNTL A FY++MIGNA+T F DI VIGERIEY I HGR+ EATT+Y GIK+G  SKKKEGEGQG
Subjt:  MEMKSLESFKEYAQRWRDKVAKVQPPLRDKEMTFMFMNTLCAPFYDQMIGNATTNFFDIIVIGERIEYEINHGRIAEATTEYSGIKRGETSKKKEGEGQG

Query:  SKANSDTWRFDPILMTYTELLPQLIQIRELAHIPMIPIQPPYPKWYDSNAWCDYHAGGAGHSTENCLALKRKVQSLTNVGWLSFKKASEKPNVNNNPLPN
         K NSDTWRFDPI MTYTELLPQLIQ R+L+ IPMIPIQPPY KWYDSNA CDY A G  HSTEN LALKRKVQSL N GWLSFKK+ EKPNVN NPLPN
Subjt:  SKANSDTWRFDPILMTYTELLPQLIQIRELAHIPMIPIQPPYPKWYDSNAWCDYHAGGAGHSTENCLALKRKVQSLTNVGWLSFKKASEKPNVNNNPLPN

Query:  HENSKVNVVDFFDEECKKKVHEIMMPMETLFESFFEVGYVS
        HEN KVNVVD   E+CK +VHEIMMPME LFE  F+ GYVS
Subjt:  HENSKVNVVDFFDEECKKKVHEIMMPMETLFESFFEVGYVS

XP_031737546.1 uncharacterized protein LOC116402435 [Cucumis sativus]1.2e-10278.01Show/hide
Query:  MEMKSLESFKEYAQRWRDKVAKVQPPLRDKEMTFMFMNTLCAPFYDQMIGNATTNFFDIIVIGERIEYEINHGRIAEATTEYSGIKRGETSKKKEGEGQG
        ME KS ESFKEYAQRWRD  A+VQPPL DKEMTFMFMNTL APFYD+MIGNATTNF DIIVIGERIEY I HGR+ E + EY G+K+G T KKKEGE  G
Subjt:  MEMKSLESFKEYAQRWRDKVAKVQPPLRDKEMTFMFMNTLCAPFYDQMIGNATTNFFDIIVIGERIEYEINHGRIAEATTEYSGIKRGETSKKKEGEGQG

Query:  SKANSDTWRFDPILMTYTELLPQLIQIRELAHIPMIPIQPPYPKWYDSNAWCDYHAGGAGHSTENCLALKRKVQSLTNVGWLSFKKASEKPNVNNNPLPN
        SK NS+T+RFDPI MTYTELLPQL+  R+LA IP+ PIQPPYPKWYD NA CDYHAGG GHSTENCLALKRKVQSL N GWLSFKKA EKP+VNNNPLPN
Subjt:  SKANSDTWRFDPILMTYTELLPQLIQIRELAHIPMIPIQPPYPKWYDSNAWCDYHAGGAGHSTENCLALKRKVQSLTNVGWLSFKKASEKPNVNNNPLPN

Query:  HENSKVNVVDFFDEECKKKVHEIMMPMETLFESFFEVGYVS
        HENSKVN +D F  +CK +VHEI MPMETLFE  FE GYVS
Subjt:  HENSKVNVVDFFDEECKKKVHEIMMPMETLFESFFEVGYVS

XP_031737553.1 LOW QUALITY PROTEIN: uncharacterized protein LOC116402446 [Cucumis sativus]2.4e-9868.1Show/hide
Query:  MEMKSLESFKEYAQRWRDKVAKVQPPLRDKEMTFMFMNTLCAPFYDQMIGNATTNFFDIIVIGERIEYEINHGRIAEATTEYSGIKRGETSKKKEGE---
        ME KS ESFKEYAQRWRD  A+VQPPL DKEMTFMFMNTL APFYD+MIGNATTNF DIIVIGERIEY I HGR+ E + EY G+K+G T KKKEGE   
Subjt:  MEMKSLESFKEYAQRWRDKVAKVQPPLRDKEMTFMFMNTLCAPFYDQMIGNATTNFFDIIVIGERIEYEINHGRIAEATTEYSGIKRGETSKKKEGE---

Query:  -------------GQ----------------------GSKANSDTWRFDPILMTYTELLPQLIQIRELAHIPMIPIQPPYPKWYDSNAWCDYHAGGAGHS
                     GQ                      GSK NS+T+RFDPI MTYTELLPQL+  R+LA IP+ PIQPPYPKWYD NA CDYHAGG GHS
Subjt:  -------------GQ----------------------GSKANSDTWRFDPILMTYTELLPQLIQIRELAHIPMIPIQPPYPKWYDSNAWCDYHAGGAGHS

Query:  TENCLALKRKVQSLTNVGWLSFKKASEKPNVNNNPLPNHENSKVNVVDFFDEECKKKVHEIMMPMETLFESFFEVGYVS
        TENCLALKRKVQSL N GWLSFKKA EKP+VNNNPLPNHENSKVN +D F  +CK +VHEI MPMETLFE  FE GYVS
Subjt:  TENCLALKRKVQSLTNVGWLSFKKASEKPNVNNNPLPNHENSKVNVVDFFDEECKKKVHEIMMPMETLFESFFEVGYVS

TrEMBL top hitse value%identityAlignment
A0A5A7T0H8 Uncharacterized protein9.7e-9863.49Show/hide
Query:  MEMKSLESFKEYAQRWRDKVAKVQPPLRDKEMTFMFMNTLCAPFYDQMIGNATTNFFDIIVIGERIEYEINHGRIAEATTEYSGIKRGETSKKKEGE---
        +E KS ESFKEYAQRWRD VA+VQPPL DKEMT MFMNTL APFY++MIGNA+TNF DIIVIGERIEY I HGR+AEATTEY GIK+G  SKKKEGE   
Subjt:  MEMKSLESFKEYAQRWRDKVAKVQPPLRDKEMTFMFMNTLCAPFYDQMIGNATTNFFDIIVIGERIEYEINHGRIAEATTEYSGIKRGETSKKKEGE---

Query:  ------------------------------------------------------------GQGSKANSDTWRFDPILMTYTELLPQLIQIRELAHIPMIP
                                                                    GQGSK NSDTWRFDPI MTYTELLPQLIQ R+LA IPMIP
Subjt:  ------------------------------------------------------------GQGSKANSDTWRFDPILMTYTELLPQLIQIRELAHIPMIP

Query:  IQPPYPKWYDSNAWCDYHAGGAGHSTENCLALKRKVQSLTNVGWLSFKKASEKPNVNNNPLPNHENSKVNVVDFFDEECKKKVHEIMMPMETLFESFFEV
        IQPPYPKWYDSNA CDYHAGG GHSTENCLALKR VQSL N GWLSFKK+ EK NV  NPLP+HEN KVNVVD   E+C+ +VHEI+MPME LFE  FE 
Subjt:  IQPPYPKWYDSNAWCDYHAGGAGHSTENCLALKRKVQSLTNVGWLSFKKASEKPNVNNNPLPNHENSKVNVVDFFDEECKKKVHEIMMPMETLFESFFEV

Query:  GYVS
        GYVS
Subjt:  GYVS

A0A5A7T0R1 Uncharacterized protein1.8e-9663.37Show/hide
Query:  MEMKSLESFKEYAQRWRDKVAKVQPPLRDKEMTFMFMNTLCAPFYDQMIGNATTNFFDIIVIGERIEYEINHGRIAEATTEYSGIKRGETSKKKEGE---
        ME KS ESFKEYAQRWRD  A+VQPPL DKEMT MFMNTL APFY++MIGNA+TNF DIIVIGERIEY I HGR+AEATTEY GIK+G  SKKKEGE   
Subjt:  MEMKSLESFKEYAQRWRDKVAKVQPPLRDKEMTFMFMNTLCAPFYDQMIGNATTNFFDIIVIGERIEYEINHGRIAEATTEYSGIKRGETSKKKEGE---

Query:  ------------------------------------------------------------GQGSKANSDTWRFDPILMTYTELLPQLIQIRELAHIPMIP
                                                                    GQGSK NSDTWRFDPI MTYTELLPQLIQ R+LA IPMIP
Subjt:  ------------------------------------------------------------GQGSKANSDTWRFDPILMTYTELLPQLIQIRELAHIPMIP

Query:  IQPPYPKWYDSNAWCDYHAGGAGHSTENCLALKRKVQSLTNVGWLSFKKASEKPNVNNNPLPNHENSKVNVVDFFDEECKKKVHEIMMPMETLFESFFEV
        IQPPYPKWYDSNA  DYHAGG GHSTENCLALKR VQSL N  WLSFKK+ EK NVN NPLP+HEN KVNVVD   E+CK +VHEI+MPME LFE  FE 
Subjt:  IQPPYPKWYDSNAWCDYHAGGAGHSTENCLALKRKVQSLTNVGWLSFKKASEKPNVNNNPLPNHENSKVNVVDFFDEECKKKVHEIMMPMETLFESFFEV

Query:  GYV
        GYV
Subjt:  GYV

A0A5A7T5W2 Retrotrans_gag domain-containing protein1.1e-10172.08Show/hide
Query:  MEMKSLESFKEYAQRWRDKVAKVQPPLRDKEMTFMFMNTLCAPFYDQMIGNATTNFFDIIVIGERIEYEINHGRIAEATTEYSGIKRGETSKKKEGE---
        ME KS ESFKEYAQRWRD  A+VQPPL DKEMT MF+NTL APFY++MIGNA+TNF DIIVIGERIEY I HGR+AEATTEY GIK+G  SKKKEGE   
Subjt:  MEMKSLESFKEYAQRWRDKVAKVQPPLRDKEMTFMFMNTLCAPFYDQMIGNATTNFFDIIVIGERIEYEINHGRIAEATTEYSGIKRGETSKKKEGE---

Query:  ----------------------GQGSKANSDTWRFDPILMTYTELLPQLIQIRELAHIPMIPIQPPYPKWYDSNAWCDYHAGGAGHSTENCLALKRKVQS
                              GQGSK N DTW+FDPI MTYTELLPQLIQ R++A IPMIPIQPPYPKWYDSNA CDYHAGG GHSTENCLALKR VQS
Subjt:  ----------------------GQGSKANSDTWRFDPILMTYTELLPQLIQIRELAHIPMIPIQPPYPKWYDSNAWCDYHAGGAGHSTENCLALKRKVQS

Query:  LTNVGWLSFKKASEKPNVNNNPLPNHENSKVNVVDFFDEECKKKVHEIMMPMETLFESFFEVGYV
        L N GWLSFKK+ +KPNVN NPLP+HEN KVNVVD   E+CK +VHEI+MPME LFES FE GYV
Subjt:  LTNVGWLSFKKASEKPNVNNNPLPNHENSKVNVVDFFDEECKKKVHEIMMPMETLFESFFEVGYV

A0A5A7V3W7 Retrotrans_gag domain-containing protein1.5e-9863.49Show/hide
Query:  MEMKSLESFKEYAQRWRDKVAKVQPPLRDKEMTFMFMNTLCAPFYDQMIGNATTNFFDIIVIGERIEYEINHGRIAEATTEYSGIKRGETSKKKEGE---
        ME KS ESFKEYAQRW+D  A+VQPPL DKEMT MFMNTL APFY++MIGNA+TNF DIIVIGERIEY I HGR+AE TTEY GIK+G  SKKKEGE   
Subjt:  MEMKSLESFKEYAQRWRDKVAKVQPPLRDKEMTFMFMNTLCAPFYDQMIGNATTNFFDIIVIGERIEYEINHGRIAEATTEYSGIKRGETSKKKEGE---

Query:  ------------------------------------------------------------GQGSKANSDTWRFDPILMTYTELLPQLIQIRELAHIPMIP
                                                                    GQGSK NSDTWRFDPI MTYTELLPQLIQ R+LA IPMIP
Subjt:  ------------------------------------------------------------GQGSKANSDTWRFDPILMTYTELLPQLIQIRELAHIPMIP

Query:  IQPPYPKWYDSNAWCDYHAGGAGHSTENCLALKRKVQSLTNVGWLSFKKASEKPNVNNNPLPNHENSKVNVVDFFDEECKKKVHEIMMPMETLFESFFEV
        IQPPYPKWYDSNA CDYHAGG GHSTENC ALKR VQSL N GWLSFKK+ EKPNVN NPLPNHEN KVN VD   E+CK +VHEI+MPME LFE  FE 
Subjt:  IQPPYPKWYDSNAWCDYHAGGAGHSTENCLALKRKVQSLTNVGWLSFKKASEKPNVNNNPLPNHENSKVNVVDFFDEECKKKVHEIMMPMETLFESFFEV

Query:  GYVS
        GYVS
Subjt:  GYVS

A0A5D3DX42 Uncharacterized protein9.7e-9875.93Show/hide
Query:  MEMKSLESFKEYAQRWRDKVAKVQPPLRDKEMTFMFMNTLCAPFYDQMIGNATTNFFDIIVIGERIEYEINHGRIAEATTEYSGIKRGETSKKKEGEGQG
        ME KS +SFKEYAQ WRD  A+VQP L DKEMT MFMNTL A FY++MIGNA+T F DI VIGERIEY I HGR+ EATT+Y GIK+G  SKKKEGEGQG
Subjt:  MEMKSLESFKEYAQRWRDKVAKVQPPLRDKEMTFMFMNTLCAPFYDQMIGNATTNFFDIIVIGERIEYEINHGRIAEATTEYSGIKRGETSKKKEGEGQG

Query:  SKANSDTWRFDPILMTYTELLPQLIQIRELAHIPMIPIQPPYPKWYDSNAWCDYHAGGAGHSTENCLALKRKVQSLTNVGWLSFKKASEKPNVNNNPLPN
         K NSDTWRFDPI MTYTELLPQLIQ R+L+ IPMIPIQPPY KWYDSNA CDY A G  HSTEN LALKRKVQSL N GWLSFKK+ EKPNVN NPLPN
Subjt:  SKANSDTWRFDPILMTYTELLPQLIQIRELAHIPMIPIQPPYPKWYDSNAWCDYHAGGAGHSTENCLALKRKVQSLTNVGWLSFKKASEKPNVNNNPLPN

Query:  HENSKVNVVDFFDEECKKKVHEIMMPMETLFESFFEVGYVS
        HEN KVNVVD   E+CK +VHEIMMPME LFE  F+ GYVS
Subjt:  HENSKVNVVDFFDEECKKKVHEIMMPMETLFESFFEVGYVS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAGATGAAGAGTTTAGAAAGCTTCAAAGAATATGCTCAACGATGGAGAGACAAGGTCGCTAAGGTTCAACCACCGTTAAGAGACAAAGAAATGACATTTATGTTTAT
GAATACTTTATGTGCTCCATTCTATGATCAAATGATTGGTAATGCAACAACTAATTTTTTTGACATTATCGTTATTGGTGAAAGAATTGAATATGAGATAAACCACGGGA
GGATAGCAGAGGCTACAACTGAATATAGTGGAATAAAGAGAGGAGAAACATCTAAGAAGAAAGAAGGAGAGGGTCAAGGTAGCAAGGCTAACTCGGATACTTGGCGATTT
GATCCAATTCTCATGACTTATACAGAGCTTTTACCCCAGCTAATTCAAATTCGAGAGTTAGCTCATATTCCAATGATTCCTATACAACCTCCTTATCCAAAATGGTATGA
TTCAAATGCTTGGTGTGATTATCATGCTGGAGGAGCAGGACACTCAACTGAAAATTGTTTGGCTTTGAAAAGGAAGGTGCAATCTTTGACTAATGTTGGATGGTTAAGTT
TTAAAAAAGCTAGTGAAAAGCCAAATGTCAATAACAATCCACTGCCTAATCATGAAAATTCAAAGGTGAATGTTGTGGATTTCTTTGACGAAGAGTGTAAAAAAAAGGTT
CATGAGATAATGATGCCTATGGAAACACTTTTTGAAAGTTTTTTTGAAGTAGGATATGTTAGTTAG
mRNA sequenceShow/hide mRNA sequence
ATGGAGATGAAGAGTTTAGAAAGCTTCAAAGAATATGCTCAACGATGGAGAGACAAGGTCGCTAAGGTTCAACCACCGTTAAGAGACAAAGAAATGACATTTATGTTTAT
GAATACTTTATGTGCTCCATTCTATGATCAAATGATTGGTAATGCAACAACTAATTTTTTTGACATTATCGTTATTGGTGAAAGAATTGAATATGAGATAAACCACGGGA
GGATAGCAGAGGCTACAACTGAATATAGTGGAATAAAGAGAGGAGAAACATCTAAGAAGAAAGAAGGAGAGGGTCAAGGTAGCAAGGCTAACTCGGATACTTGGCGATTT
GATCCAATTCTCATGACTTATACAGAGCTTTTACCCCAGCTAATTCAAATTCGAGAGTTAGCTCATATTCCAATGATTCCTATACAACCTCCTTATCCAAAATGGTATGA
TTCAAATGCTTGGTGTGATTATCATGCTGGAGGAGCAGGACACTCAACTGAAAATTGTTTGGCTTTGAAAAGGAAGGTGCAATCTTTGACTAATGTTGGATGGTTAAGTT
TTAAAAAAGCTAGTGAAAAGCCAAATGTCAATAACAATCCACTGCCTAATCATGAAAATTCAAAGGTGAATGTTGTGGATTTCTTTGACGAAGAGTGTAAAAAAAAGGTT
CATGAGATAATGATGCCTATGGAAACACTTTTTGAAAGTTTTTTTGAAGTAGGATATGTTAGTTAG
Protein sequenceShow/hide protein sequence
MEMKSLESFKEYAQRWRDKVAKVQPPLRDKEMTFMFMNTLCAPFYDQMIGNATTNFFDIIVIGERIEYEINHGRIAEATTEYSGIKRGETSKKKEGEGQGSKANSDTWRF
DPILMTYTELLPQLIQIRELAHIPMIPIQPPYPKWYDSNAWCDYHAGGAGHSTENCLALKRKVQSLTNVGWLSFKKASEKPNVNNNPLPNHENSKVNVVDFFDEECKKKV
HEIMMPMETLFESFFEVGYVS